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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059927 ID=TCONS_00059927|Name=TCONS_00059927|organism=Clytia hemisphaerica|type=transcript|length=851bp
CGAACATCATTTTTAATGAgcgttgttatgattttttttgattgcgggga
tcgctcttctttttgttttctcatactttactgaaaatcaaaaaatatat
ctACCTGGAAGGCCTTGAACAAAGGAAAGCccaatcaatgataaaatgat
tAATAGCATAGTTATTGAATAAGCAGCATTTCATCAGAactaaatgataa
aaaattgcaGTCCAGCAAGGCTccgattttaatttttgaaattttcagcc
tcccgccatAAATGAGTCAATGTTTGTTTTGTCAGCCAAGTGGATGAGTT
TTAGCAATAGTTCTATAGTTATTTTACAGAACTCAAATCTTCCAGATTTC
TTGTAAAGATGATTCGTTCGGCAATATTTCAGTTACCAAAAAATACGGGC
TAGTGATGTCAACATGTCAACATGATGGATGAGATCGGAGCCTAGAGTAT
TTCTCCGGACAGTTGACAAGAATTCGTCAAATTTGGTTCTCATATAAAGA
CTGTTTTTATCGCTAGATTTTACTTTAAAGATGTGGTACGAAATTATCCC
ATCACTTGGAATCATTTGTGGAGCTATGTGGCTTTCAGGAAAAGGATTGA
GTGCTGTACAACGACTCCAGAATGGTGGCAAGCCAAGAAGGTGTAATGTT
GATGGATTTGATGAACGAATGATGGAGCGTGACCGGAGGTTGACTGGAAA
TTATTACACCCAGCAGgcatTGTAATGGTGGTCGATGTagtgaaatgtaa
aaatttgtaactttttgttttaaaatcaataaatttaGATATAAATATCA
AACCAATCAACTCTTGTTCTCTTCTCAAGCATTTTGAGTGTTGATAAACA
A Run BLAST on NCBI transcript from alignment at scaffold_331:1170517..1172887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059927 ID=TCONS_00059927|Name=TCONS_00059927|organism=Clytia hemisphaerica|type=transcript|length=2371bp|location=Sequence derived from alignment at scaffold_331:1170517..1172887- (Clytia hemisphaerica)
CGAACATCATTTTTAATGAGCGTTGTTATGATTTTTTTTGATTGCGGGGA
TCGCTCTTCTTTTTGTTTTCTCATACTTTACTGAAAATCAAAAAATATAT
CTACCTGGAAGGCCTTGAACAAAGGAAAGCCCAATCAATGATAAAATGAT
TAATAGCATAGTTATTGAATAAGCAGCATTTCATCAGAACTAAATGATAA
AAAATTGCAGTCCAGCAAGGCTCCGATTTTAATTTTTGAAATTTTCAGCC
TCCCGCCATAAATGAGTCAATGTTTGTTTTGTCAGCCAAGTGGATGAGTT
TTAGCAATAGTTCTATAGTTATTTTACAGAACTCAAATCTTCCAGATTTC
TTGTAAAGATGATTCGTTCGGCAATATTTCAGTTACCAAAAAATACGGGC
TAGTGATGTCAACATGTCAACATGATGGATGAGATCGGAGCCTAGAGTAT
TTCTCCGGACAGTTGACAAGAATTCGTCAAATTTGGTTCTCATATAAAGA
CTGTTTTTATCGCTAGATTTTACTTTAAAGATGTGGTACGAAATTATCCC
ATCACTTGGAATCATTTGTGGAGCTATGTGGCTTTCAGGAAAAGGATTGA
GTGCTGTACAACGACTCCAGAATGGTGGCAAGGTAGATATCTCCTTCCTT
TTAAATTTTTACAACTTGTTGTAGTGTTGTTGTAGAGGAGAAGATGCCTA
TTATGAAACCAACAATAAGGGCAGTGTTGAAAAATTGGTTTCAAACTAGT
TTTATTGAATGGTTCTCTTGACAGTCTAAACTTAAACTCCTTTACAGTAT
CAGGATTAGAAACTAGGCTTAGTCTTACCTATTTTATCTTTCTCTTTACA
ACAATACAATGCTGACAAGTTGACACAGCACATGTGCACATGTACATTGA
CAAGTAATCCCTGAGAGAAGTTTTTATAGAAATCTGCAACAAAAACGAAA
GTGGTCTTTTCTACTGATTGCCTCCCAGCGCTCCTTCACAGCTGTTTATC
AAATTTTCACCAATGAAGTTGCCACATTTCAAACAACCCTTCTCTTTTGG
CACTCTTGGCCTTTCAGTGCCTTGCACGACGGGCGGCTGTAAAATCCCAC
CCTTCATATTTTTTTCAATCCGTGATTCGTGACTTAGGTTTTTTCTCATC
TTCAATTTACTGAAGAAAGCGGGAATTTGATGCAAGAGTTAGATTGTCAA
CAAAGTGCCGTAAAAAAATCATTGAATAAAAGAAGAACTTAAAATCTTAA
ATATTTTCATTTTGAAGAATAGGTGCAAAAAAGTGAAACATGGAAAAGTT
TCATTTTTCATTGCATTAATCGAAGTGGGGGATTTAGAAAATTTTTATGT
TTAGTTTTTTGCACAAACCCCTGTAACTATGGGCAAGCACCTTGTTGCTA
AGATGTTGGCTTGAAATCGAAAATGAAACAACTCAAAACGAAAGTAAAAT
TGGCCCGTACTCAAAATCCCGTAATCTTGCTGTACGAGTTTAAGTCTATA
CTGCTTGAACTTCTTAAAGTGATAAACTGATTTTAGTAGTTTAACTTTTA
AATAATCCCCAGTAGTCCAGAAGATTGTGCTCTTCAAGAAAAATATTTGT
ATATGGGGGGGGGGTGGAAGATATATAGTGTCCAGGGGTAGTGAAAATTC
CACATAATTTGCCTTTTTGTATTTCTCTCAGCTTAGAGGTAATTTAGAGT
GTCCAGGGTGGGGTTTAACTAATGTTTGGTTCAGTGGTTAGACCTGCTGT
CCGGGGGGTTAAAAGTCACAATGTCCGGGGGTAAATCTCCAAAAAATGTT
ATATACTCCGGCCTTCATATTAAAGATTTAGAAAAGCCCATTGGCTCACA
AAATTTGCCATTTTTTCACTTCTTTTTTTAAACATCAAACATGTGATTGA
AAAATTTCAACTACTTGTCCTTTTTTTCCAGCCAAGAAGGTGTAATGTTG
ATGGATTTGATGAACGAATGATGGAGCGTGACCGGAGGTTGACTGGAAAT
TATTACACCCAGCAGGTTTGTGTTAAAAATAAATTTACTGATCTCCGCTT
TTACAAAATGAAAATATCTCTTGTTTTTAACATTCTGGAACAATTCCTGC
TTGCCTTCTAAATTTTTTATTTACTGAAAATGCAATCAGGATAATACAAT
ACTGTCAAAGCTTTTAAAATAGGACTTTTTGATGCTCTTTCATTGCTTCT
AGGCATTTTTTTAATATTCATGTTTTTCATTTTCAGGCATTGTAATGGTG
GTCGATGTAGTGAAATGTAAAAATTTGTAACTTTTTGTTTTAAAATCAAT
AAATTTAGATATAAATATCAAACCAATCAACTCTTGTTCTCTTCTCAAGC
ATTTTGAGTGTTGATAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059927-exon-scaffold_331-1575043694:1172256..1172887 | TCONS_00059927-exon-scaffold_331-1575043694:1172256..1172887 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1575043694:1170873..1170956 | TCONS_00059927-exon-scaffold_331-1575043694:1170873..1170956 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1575043694:1170517..1170651 | TCONS_00059927-exon-scaffold_331-1575043694:1170517..1170651 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1510915933:1172256..1172887 | TCONS_00059927-exon-scaffold_331-1510915933:1172256..1172887 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1510915933:1170873..1170956 | TCONS_00059927-exon-scaffold_331-1510915933:1170873..1170956 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1510915933:1170517..1170651 | TCONS_00059927-exon-scaffold_331-1510915933:1170517..1170651 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1491911889:1172256..1172887 | TCONS_00059927-exon-scaffold_331-1491911889:1172256..1172887 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1491911889:1170873..1170956 | TCONS_00059927-exon-scaffold_331-1491911889:1170873..1170956 | Clytia hemisphaerica | exon |
| TCONS_00059927-exon-scaffold_331-1491911889:1170517..1170651 | TCONS_00059927-exon-scaffold_331-1491911889:1170517..1170651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1170517..1172887 - |
Blast
The following BLAST results are available for this feature:
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