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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059196 ID=TCONS_00059196|Name=TCONS_00059196|organism=Clytia hemisphaerica|type=transcript|length=1162bp
cgtcctcgattttgtgggTCAGAACTGCGGCTTTTTCCAAATAGCTTCAG
CCACTCCGCCGCcttcaaaaaattgcaaatactAAACTCGCTGTTAAAAA
CGAGCTGAGCCGTACCGCTGATTTAGTCCAGAAATATCACCAAGATGGCT
AAAAGGCTAAAAAGACCAACTAACTAAAAACACataaattcaaaatggca
gcAAGACCAAAGGGTTACGGATTAACTGCTGAAGTCAGAGGAAAAATTGA
TGGCAAATATGATGGCGAATTAGCACAACAAGCCATGCAATTCATTGAAC
ATTACGTTCCTGACTCCAACGTTTCTGGAAACAGTACATCAGATGCAGTT
GCCGAAAAACTGAAAGACGGGGTCGTTTTATGTAAACTCATCAATGCTAT
CGAACCTGGGTCCATTAAAAAATTCAACGAAtcaaaaatggcttttaaac
AGATGGAAAACATCGGAAAGTTCTTAGACGCTATCGACCAGTACGGTGTT
GCGAAATCAGATAGTTTCCAAACAGTCGATCTTTATGAGAAACAAAACAT
GCCAGCTGTCATCAATGCTATCCACGCTTTAGGACGAAAAGCACAAGGTA
AAGGGCGTTATGGCATCGGCCCAAAAGAGTCGcaagccaacaaacgggaa
tTTANTCTAAAGGGTGTTATGGTATCGGCCCAAAAGAGTCGcaagccaac
aaacgggaatTTACTGAAGAGCAAATGCGTGCTGGTTCAAATGTTATCGG
ACTTCAAATGGGTTCCAATAAAGGAGCGTCTCAGGCTGGTCAAAACTTTG
GTAAAACTAGATCTATCATGGATTAAGTTGGTGATTTATTTGGCAATGAA
CAAGTTTATCTGTCACTTTTTGCATTTGTAACCATGCTGGACTTTTTTTC
GAAGACTTTTTCAATTAATATTTTCGAGATACGTTTTGAAGGGTATTATG
GGTATTGAAATCAGTATACGAGCACTGGGTACGATTCTTATTGTTTAGTA
TTATACAGAGGTAGGAAAATCTATTTGATGTTTATTTTAGAATATTTAAA
GACTATCAAAAACCCTGACGTGTGATGAATTATTACCATGGTTTTCATGT
CCCTAAGGGCTTCAATGGTTAAAATACCCAGagcaagttaaaaacatttt
aagactttgtgg Run BLAST on NCBI transcript from alignment at scaffold_319:322315..327461- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059196 ID=TCONS_00059196|Name=TCONS_00059196|organism=Clytia hemisphaerica|type=transcript|length=5147bp|location=Sequence derived from alignment at scaffold_319:322315..327461- (Clytia hemisphaerica)
CGTCCTCGATTTTGTGGGTCAGAACTGCGGCTTTTTCCAAATAGCTTCAG
CCACTCCGCCGCCTTCAAAAAATTGCAAATACTAAACTCGCTGTTAAAAA
CGAGCTGAGCCGTACCGCTGATTTAGTCCAGAAATATCACCAAGATGGCT
AAAAGGCTAAAAAGAGTAAGTAGGCACTAACATTGACGACCAACAAGGAC
ATGCCATAAGCCACTGGAAGAACTCTTCCTTTCTATTTATTTCCTTAGTA
TCTCCTTTCTTCGAATGTTTACACAAAATGCGGACACAAAAATTAAGTCG
AGTATTGATTGATATCTGAATTTATAAGTGGTATCTGAATTTTATTTTTA
ACTCTATACAAATAAAATGTACATCGAATCAGTGGCGTGGTGGCAGGGGG
GCCAGGCCCCCGCAGCGGAGCCCTTTTGAGAAGGGGCGCCCAAAAATAAG
GGACGCCAAGAAGGATTTTTCAGGCGCCCATATCGAAAGATTGACAAATG
AAAAAACAAAAATGGCGNTGTTTTATGGAACAGCTGCAATTAAGACCAGA
CCAGTATAAGGAATGTCTATAGCAATCAATGTTCTTATAAAAAAAGGGGA
CATAATACATCTAACACCACAACAGGGGTCTGGGGTCAATCTTGATCAAA
TTCCAAAACTTTTTTTTTTGTCACCGTTATTTTGGAATTTTTGACAATCA
TGATGATCTTTTTATGAATCTTTACGCGTGCTGCTGNTGCCAAAAAACAA
AAAATCTTTAAAAAGGGCGCCATATTTGCCCTGGCCACCCCAGAGAAATT
TTCCCACCACGCCACTGCATTGAATCTCAGTATCAAGCGGCTAAAGGTCA
TTTTTCGTNATTGATGACTCGCCATTTTAACGATGATAGTTTGATTGTTC
GTTAATGAATCGTGGGAAAATGATGGCATTTGATTTTTAAAGAGAACAAA
GGGCATCATTAGCGACTTNTCCGTCCTTACCCTGGCGAGCAATGTACTCT
GAATCTCCGAAACAGAATGACACCATATAGATATTTCTAATTTAATCCAA
TTGCGAACCTGATACTGGAATGCATTAGTTGCGACCTAACAAGTTGTTAA
TACTTTTACCAGTCTTTTATCTCGCTTTTTTATCATATCTCCTTATCTTA
TCTCTAAATGTGAAACATGATTTCGGGTATTTTTGACCTTTTCTCAAAGC
AAGATATTTTCAAATGAAGTAGTGTCTACTTTCAGTACTTTGGTCTTGTA
TGGTTATATCACTAGGCTTCGTCTTAATTTTGCTAAATGTGAGGAGTGAA
TTACTTGAGAAAAGGTGTACAATTCCTTTTGACATCTCGAACAATGCCAA
TGGGTCTCTCGCGTTTCCACCTAAATATTTTCAAAAACATCCAGCGCCTG
AAAAGACCACTTCGCCCATCCATCCATTCAAGATTTTTAAAAACCTTTTT
AGATATTCGGATCGGTGGAATTAGACAATAATTATGGAAATAATTTAAGT
ATTTCAGACGATGCATAAGAGTATCTGCAACTCGAACACTCACGAGGAAC
ACAAACTTGTTCGAGTTAAGGAGTGGAGTAAGGTTTATAAAGCATTGTTA
ACTGAAGGAACAGAACATATAAATTTTTTTGGGAATGTCCGGAATTCTAG
GCAAAAAGCATGTTCTTATTCTAAAGAAATTTTCTGTGGTGTATTTTCAG
TTTTCATTTGGACGATGATATGGTATGGCAGAAATAGGAAACAAAATTCA
TACTTCGAAGGGTCGGATACAGGAGGTAGGCTATCTTATTCATGGAGAGT
AATTAGTTTCCATATAAGGTAATACGATAATAAAGTGCACTCTCCTCCAT
TGGTTATAGCCTCCCTCTGTATCCGAGCCTGCTTCGAAAGAGCGATTTCA
AGCGTGTCGGATAAATGTCCGACCGTTATTAAATCCCTGTGATGGGATGA
TGGGATAAGATCATCCAACGTACTATACCTAAAAGAGAGTTCTCTGTAAA
CCATGGGTGGCTTGTTTGTTTCTTTCTATTTGGCAGATCCTTAATAAAAA
TTGTTTTTTCAATACTTGTAAAACCTGCCAAAAAATTTGTCAGAACAACA
TTTTGCTTGTCTATTTTGTTTATCTGTGGTTATCCTTCTCATTTGATTTC
TTTTTTTTTGCGGGAGGTCCCCGGGGTCTGAAGTAGCGAGCACCTCACTA
ATAACCGGGACTTTTCATCTCGTTTCTTGCGTAAAAAAACGCGGGTGACG
TCTAGTATAGGCTAGGTCTGAAGTTGCTGATCGAAAACTCGCACCCTGTA
TCTCGCACGGGCTATCAATACACACCTCAGACCTGAATATTACTTTATTG
CCTGAAAACATATGTTAAACTTAAGGCTACTAAGCAAGTATATCAGTTAA
ATTGTTGTTGACACTATATAAACGCAAACAAGAGAAATTACGCTGCATTC
TGTCAAAATTTCCACGAAACTTGGCAAGGTTAATGAAATTGAGACATATC
AAACTTGATTGAATTTGATTGTTAATCAAGTACTATATGTCTCATTTCAA
TGACCTTGCATGGAAATTCTTCCGGTTTGAAGTTTTTTCAAGGTCGACAG
TGATTGGCTTGCTCGATATATAACTATTCGAATCAATCTTTCTATAAGCT
TAAAACAATCAATCGAGATTTTTTAAGCGCATTGGAAGTTATAGTTCAAA
GGCAGTAAGTTTAAGGGAAGTTTAAGACTCATTTTGTAACAGCTTTTAAT
TCATAGCGGATTATACCTTGATTTGAAATGACAGTTACAGGATTATACTG
GTTCGGAATTAGTTTTTTTTATAAGCATTCTTTTAGTTGTACCAATCACA
AGGCCTAAATTTTCAAAGTTTTAATTATTTTTTAGAATCATGCTGATCCT
CTACGATATTAATTGACAATGTAAATAAGGCTTTAAGAAATTTCGAGATA
ATCGTTTTCTCCTTGGTCTTCTTTAAAATTTAAAGATGACGTAGAATATT
TTCCGAGAGATTGGAAGGTTTTCTCAAGAATGTTTTCATCCTTGAGGATG
AAAAATTTAAGAATCAAGAGTCTAGTTTCAATTTATGTAATTCTTATAAA
AAAACTATCTATTTCCCTCTCACACCTTAAGAAGATACTTCATAGCTCTT
AAACAAGGCTTTCTCGTTTGATGTAAGTTCGGAGACAAGGTCATCAAATA
CTATGTTATGAAAAAGATTTGTTTCTTTGACAAAAAAACGGTACATAATT
TTGCAAAGGCGATTGAATTTTTGTGCTCTGACAATCAGGTATTCAATCTG
AGATATTTTCAATGTCCATAAACTATAGTTGTAAAACATCAATCTTCTAG
ATTGTTCAGATGAAATCGAGAACAAGTATCTCAATTGAAATTTCGAGTCA
AGAAGTTCAGATTATGTATCGTACTGGAAAATAGCAATTTTTTCCATGCT
GGCGTTATCTCCTTGGTGTCATTTCCGCGCTATATAAAGTTATTAACAAA
ATCTTTAATATATTATTACCGATAGCGTCGTTTTATGCTCATCTCTTGGT
ACACGATTTTGGCCGATATGGTTTACCGTTGAACATGTTTTATGATTGTA
ATTTTGCTTTCTATTTTCTCGTTTCTCAGCCAACTAACTAAAAACACATA
AATTCAAAATGGCAGCAAGACCAAAGGGTTACGGATTAACTGCTGAAGTC
AGAGGAAAAATTGATGGCAAATATGATGGCGAATTAGGTAAGTTGAATCT
CATACTTCATACAATTTCGAAACGTGTTTTATTTTAACTTCTTCCACTCA
ACTACCAGTCAGAGAATTCCCTCAATTGCGGTATACTGTAATCGCGGGAA
GAAATAACTACCGCGATTGAGAGAATTCCTCGACTGACAACTGTTTTATC
GGAGCACCACTAATAATAACCACCACTGCCAAATTTTATCAATGAGTAAC
CTGCTAAACTTTTCTCTTCAATAATTTGGAAAATAGTTTTTAACTCTTTA
CCGGATCAGGTATGATACCAATATTGCTCCTTTAGCCATCTCTATCTGCT
ATTGAAGTTTGAAGATCTTCAAGTTTTAGGTCAGTCTAGCTATATAGTTA
TTTTTGAAAGCACGAAATAGTTTTAACATCTGATCGTCCTACCGCATGTA
ACTTTATTCTGTTGTGTTATTTTGCCCAAGTTTGCAAGGCATTTCTTATA
AAGTGGATGGTAAAAAGCACCCCCCCCCATTTATTTTCCTCCATTGTTTT
TCTCATAGCACAACAAGCCATGCAATTCATTGAACATTACGTTCCTGACT
CCAACGTTTCTGGAAACAGTACATCAGATGCAGTTGCCGAAAAACTGAAA
GACGGGGTCGTTTTATGTAAACTCATCAATGCTATCGAACCTGGGTCCAT
TAAAAAATTCAACGAATCAAAAATGGCTTTTAAACAGATGGAAAACATCG
GAAAGTTCTTAGACGCTATCGACCAGTACGGTGTTGCGAAATCAGATAGT
TTCCAAACAGTCGATCTTTATGAGAAACAAAACATGCCAGCTGTCATCAA
TGCTATCCACGCTTTAGGACGAAAAGCACAAGGTAAAGGGCGTTATGGCA
TCGGCCCAAAAGAGTCGCAAGCCAACAAACGGGAATTTANTCTAAAGGGT
GTTATGGTATCGGCCCAAAAGAGTCGCAAGCCAACAAACGGGAATTTACT
GAAGAGCAAATGCGTGCTGGTTCAAATGTTATCGGACTTCAAATGGGTTC
CAATAAAGGAGCGTCTCAGGCTGGTCAAAACTTTGGTAAAACTAGATCTA
TCATGGATTAAGTTGGTGATTTATTTGGCAATGAACAAGTTTATCTGTCA
CTTTTTGCATTTGTAACCATGCTGGACTTTTTTTCGAAGACTTTTTCAAT
TAATATTTTCGAGATACGTTTTGAAGGGTATTATGGGTATTGAAATCAGT
ATACGAGCACTGGGTACGATTCTTATTGTTTAGTATTATACAGAGGTAGG
AAAATCTATTTGATGTTTATTTTAGAATATTTAAAGACTATCAAAAACCC
TGACGTGTGATGAATTATTACCATGGTTTTCATGTCCCTAAGGGCTTCAA
TGGTTAAAATACCCAGAGCAAGTTAAAAACATTTTAAGACTTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059196-exon-scaffold_319-1575043694:327297..327461 | TCONS_00059196-exon-scaffold_319-1575043694:327297..327461 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1575043694:323725..323832 | TCONS_00059196-exon-scaffold_319-1575043694:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1575043694:322315..323203 | TCONS_00059196-exon-scaffold_319-1575043694:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1510915933:327297..327461 | TCONS_00059196-exon-scaffold_319-1510915933:327297..327461 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1510915933:323725..323832 | TCONS_00059196-exon-scaffold_319-1510915933:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1510915933:322315..323203 | TCONS_00059196-exon-scaffold_319-1510915933:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1491911889:327297..327461 | TCONS_00059196-exon-scaffold_319-1491911889:327297..327461 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1491911889:323725..323832 | TCONS_00059196-exon-scaffold_319-1491911889:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059196-exon-scaffold_319-1491911889:322315..323203 | TCONS_00059196-exon-scaffold_319-1491911889:322315..323203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:322315..327461 - |
Blast
BLAST of TCONS_00059196 vs. Swiss-Prot (Human)
Match: CNN1 (Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 4.190e-27 Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 3
Query: 204 RPKGYGLTAEVRGKIDGKYDGELAQQAMQFIEHYVPDSNVSGNSTSDAVAEKLKDGVVLCKLINAIEPGSIKKFNESKMAFKQMENIGKFLDAIDQYGVAKSDSFQTVDLYEKQNMPAVINAIHALGRKAQGKG-RYGIGPKESQANKREF 653
R YGL+AEV+ K+ KYD + Q+ ++IE V+G + + LKDG++LC+ IN ++PGS+KK NES + Q+ENIG F+ AI +YGV D F+ DL+E N V + + AL A+ KG + +G K ++ +R+F
Sbjct: 8 RGPAYGLSAEVKNKLAQKYDHQREQELREWIE------GVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVKYAEKQERKF 152
The following BLAST results are available for this feature:
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