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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059148 ID=TCONS_00059148|Name=TCONS_00059148|organism=Clytia hemisphaerica|type=transcript|length=448bp
cNGCATCAGCCAGAATCCGAAAAGAAATGACCAATGCTATGATGCTTGAG
CGAAGAAAGAAGAGGACAGAAAAAGAGCACATGTCAACAATCAGAGAGCG
AGAACGTCGTAATCGGCAAGCCATTATTGCGTCCAAAAAGAACCGCGAAG
TAGCCATGCGTAACCTGAAGACAACAATGTCCAAAGTTCGTCAGCGTGAA
AGTGAAGAGGAAGACAGAAGTCGAAGTGATTTGAACCAGCGCATGAGTGC
GTTGTTATCTctgaagaaaaatattgaaatgagcaAGGAAAACATATCCG
CAGTGCAAGCACGTGACACGTATAAGAAAAAGCAAGAAGATACAAAGGAG
AAAGACGAACGACAAAAATTGTTATTAATGGGTGAAAACCCTGACGAAGT
GGTCACTCGTAGGAAAAGAATACGACAATTCGAAAGGGACAAAgagta Run BLAST on NCBI protein sequence of TCONS_00059148-protein >TCONS_00059148-protein ID=TCONS_00059148-protein|Name=TCONS_00059148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
ASARIRKEMTNAMMLERRKKRTEKEHMSTIRERERRNRQAIIASKKNREV
AMRNLKTTMSKVRQRESEEEDRSRSDLNQRMSALLSLKKNIEMSKENISA
VQARDTYKKKQEDTKEKDERQKLLLMGENPDEVVTRRKRIRQFERDKE Run BLAST on NCBI transcript from alignment at scaffold_318:146679..147802- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059148 ID=TCONS_00059148|Name=TCONS_00059148|organism=Clytia hemisphaerica|type=transcript|length=1124bp|location=Sequence derived from alignment at scaffold_318:146679..147802- (Clytia hemisphaerica)
CNGCATCAGCCAGAATCCGAAAAGAAATGACCAATGCTATGATGCTTGAG
CGAAGAAAGAAGAGGACAGAAAAGTAAGCACTCTTGAGTTTTTAAATTTT
CTAAATGTAGTTCCTAGCAGCTTAATATCGTCATGTTTTAACCTATATGA
ATTGTTTTGAATTTTTTGTGACTTCTCTACTAGTTATTATGATCATATTT
TGAAACTATCTTTTCCTTAACCAACTCGACACAATATTTTTCGCTAAATC
ATGAGAAAACTTCTAACTAAATGATATTAACCTAATTTTTATCATAATTG
CTTCTTTTGATAATGGCTTTATTCACTACTTTACTTCTAGAGAGCACATG
TCAACAATCAGAGAGCGAGAACGTCGTAATCGGCAAGCCATTATTGCGTC
CAAAAAGAACCGCGAAGTAGCCATGCGTAACCTGAAGACAACAATGTCCA
AAGTTCGTCAGCGTGAAAGTGAAGAGGAAGACAGAAGTCGAAGTGATTTG
AACCAGCGCATGAGTGCGTTGTTATCTCTGAAGAAAAATATTGAAATGAG
CAAGGTAAGGAAACAAGGGAAAGGATATGGTTTAAAAGGGATTATCAGAT
AATTTGACTTAGAGATACCTTTTATGGTCTTAAAGAAACACCTCGAAAGT
TTTTGACCCAATCTTTTTCCAAAGCTGAAGTATTCGACTTTGAATTTTCA
AATTTTTACCTGAAAACAATAGAAATTCAACGTAAAGACTGTGTAAAGAC
TTATTTTTAGAGATTTCAAAGCTGATTCCACGATCTTTACGACGGTGCCA
ATTTTTTTAAATATCCATTTTCAGACACACAATGTAATGGTTTTGGCAAA
AAAAAAGTTTACAAAGGGAATTACAGAGTGTTCAAGGTTAATCTTTCAGC
AAACAAACTTATATTTAGACGTATCAAGTCTGACTTACATCTTGTATTAT
TTGTTTCACTCAGGAAAACATATCCGCAGTGCAAGCACGTGACACGTATA
AGAAAAAGCAAGAAGATACAAAGGAGAAAGACGAACGACAAAAATTGTTA
TTAATGGGTGAAAACCCTGACGAAGTGGTCACTCGTAGGAAAAGAATACG
ACAATTCGAAAGGGACAAAGAGTA Coding sequence (CDS) from alignment at scaffold_318:146679..147802- >TCONS_00059148 ID=TCONS_00059148|Name=TCONS_00059148|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_318:146679..147802- (Clytia hemisphaerica)
GAAAACATATCCGCAGTGCAAGCACGTGACACGTATAAGAAAAAGCAAGA
AGATACAAAGGAGAAAGACGAACGACAAAAATTGTTATTAATGGGTGAAA
ACCCTGACGAAGTGGTCACTCGTAGGAAAAGAATACGACAATTCGAAAGG
GACAAAGAGAGAGCACATGTCAACAATCAGAGAGCGAGAACGTCGTAATC
GGCAAGCCATTATTGCGTCCAAAAAGAACCGCGAAGTAGCCATGCGTAAC
CTGAAGACAACAATGTCCAAAGTTCGTCAGCGTGAAAGTGAAGAGGAAGA
CAGAAGTCGAAGTGATTTGAACCAGCGCATGAGTGCGTTGTTATCTCTGA
AGAAAAATATTGAAATGAGCAAGGCATCAGCCAGAATCCGAAAAGAAATG
ACCAATGCTATGATGCTTGAGCGAAGAAAGAAGAGGACAGAAAAGAAAAC
ATATCCGCAGTGCAAGCACGTGACACGTATAAGAAAAAGCAAGAAGATAC
AAAGGAGAAAGACGAACGACAAAAATTGTTATTAATGGGTGAAAACCCTG
ACGAAGTGGTCACTCGTAGGAAAAGAATACGACAATTCGAAAGGGACAAA
GAGAGAGCACATGTCAACAATCAGAGAGCGAGAACGTCGTAATCGGCAAG
CCATTATTGCGTCCAAAAAGAACCGCGAAGTAGCCATGCGTAACCTGAAG
ACAACAATGTCCAAAGTTCGTCAGCGTGAAAGTGAAGAGGAAGACAGAAG
TCGAAGTGATTTGAACCAGCGCATGAGTGCGTTGTTATCTCTGAAGAAAA
ATATTGAAATGAGCAAGGCATCAGCCAGAATCCGAAAAGAAATGACCAAT
GCTATGATGCTTGAGCGAAGAAAGAAGAGGACAGAAAAGAAAACATATCC
GCAGTGCAAGCACGTGACACGTATAAGAAAAAGCAAGAAGATACAAAGGA
GAAAGACGAACGACAAAAATTGTTATTAATGGGTGAAAACCCTGACGAAG
TGGTCACTCGTAGGAAAAGAATACGACAATTCGAAAGGGACAAAGAGAGA
GCACATGTCAACAATCAGAGAGCGAGAACGTCGTAATCGGCAAGCCATTA
TTGCGTCCAAAAAGAACCGCGAAGTAGCCATGCGTAACCTGAAGACAACA
ATGTCCAAAGTTCGTCAGCGTGAAAGTGAAGAGGAAGACAGAAGTCGAAG
TGATTTGAACCAGCGCATGAGTGCGTTGTTATCTCTGAAGAAAAATATTG
AAATGAGCAAGGCATCAGCCAGAATCCGAAAAGAAATGACCAATGCTATG
ATGCTTGAGCGAAGAAAGAAGAGGACAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059148-exon-scaffold_318-1575043694:147730..147802 | TCONS_00059148-exon-scaffold_318-1575043694:147730..147802 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1575043694:147249..147462 | TCONS_00059148-exon-scaffold_318-1575043694:147249..147462 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1575043694:146679..146839 | TCONS_00059148-exon-scaffold_318-1575043694:146679..146839 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1510915933:147730..147802 | TCONS_00059148-exon-scaffold_318-1510915933:147730..147802 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1510915933:147249..147462 | TCONS_00059148-exon-scaffold_318-1510915933:147249..147462 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1510915933:146679..146839 | TCONS_00059148-exon-scaffold_318-1510915933:146679..146839 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1491911889:147730..147802 | TCONS_00059148-exon-scaffold_318-1491911889:147730..147802 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1491911889:147249..147462 | TCONS_00059148-exon-scaffold_318-1491911889:147249..147462 | Clytia hemisphaerica | exon |
| TCONS_00059148-exon-scaffold_318-1491911889:146679..146839 | TCONS_00059148-exon-scaffold_318-1491911889:146679..146839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:146679..147802 - |
Blast
The following BLAST results are available for this feature:
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