|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005889 ID=TCONS_00005889|Name=TCONS_00005889|organism=Clytia hemisphaerica|type=transcript|length=2911bp TTCTCCAGGAAAGCACCAGATCTTGAAGAAAGGTTGACATTGATTTGCAA AGAAGTACTTGTGGATCTATCAGAACCTGTCAGGAGGAACATTCGAAATA AAGAAACAATCAACCCTTGAAAAATGACAATTCTAAGTTTTTAAAGTTGA CCCTTTATTGATTGGAACACCTATTACGTTTATTTTGTAGTATATTGGAC TAAGCATCTGATTTTTCTGTAATTTCGAATTGCATTATACTATAAGTTTT TATGCTgcttaattttgtaaaataagCACAGATTACTccaaggggccgtc cacatagtacgtacgcactgaaatgtcgaaaatcggatacccctccccct gtacgcaaatggctataccccctggtaagtacgtacttttcatccacccc ccccctcggttgaagaaaatttcgaattcaattcgtttggttcggacctt tatttcatacattaGACTCAAtgatgtttattaagaaactttttctattC CTTGGTGCGTATAAGAAAcgtaaaaatcgacaaaaaacaagcaaaaaagg gctatgaaacacttttctctgcgtacgtacattttcctttgacccctccc cttcccccgtacgcaagcatacgcttttaaGAAGACTCCctctccccctt agtgcgtacgtactatgtggacggccctcAAGTGTGTTATGTTTTGGTAT GTTTCGGACAAACCATatcctgtttttgtttttgagaaagttgaattttt tatacagttgactctctataattcgatcttcaagggaccaagaattttct tcgaattagagaaagattcgttACAGAGAGTATTCTTTATTTCTAGCTGA GGGGATTATAATATTttagttcaaattatagaaagattcgaaaagtagag gttcgaattagcgagagttcacTATAGTTTGTATTTATCTTTGATTTCTT CGTCTCTCGATTCAAATGCGAAATCTCGAGCTTGCATtgtgtttttttgt gaaattactctcgggtgcctaataaacgtacatgtacgtatTTGTAACCA ttaattaaattcaatgaaCTAAATTAACTCACTAAGCAAAATTCTTGTAC TCCATCTTCTTGCACTAATATTTTTCCGGGGTAGAAACTCCTAAATAATG TACAAGCTACCCTGTCTGTTCTTTGTTTCTTTGTTAGTAGCCCCCTCCCC TTGTTTCTGCATATTTTTAATTGCAATTATCATTTCAGTCATATGTCATT TCGATTGTACAACAATCTAAGCATTATTGCatttttattgataatttttt tatattttaaagatAGAACTAAATAGAAAGTGACGAAAGAACCCAACCTA AAATAAttcctgaaataaaaaacaaagactgAGGAGGAActaaaaataca tgttttttttNATTTTATCTTTTCGATCCAGGGGCTGTGCGCGACATTCG CAAGTTGACCCTGAGGACTGGTGTCAAATTTGTGACTCGAAACGTGGATT TTATGTCAAAAGAACATTAAAAGACAACTCTCCACCTATCTTCAGTAACC GCACGACATTCTTCGCATTCAGAGGACAAAATCATTCCTTTCAAATATTG GCTGAGGACCCTGAAAACAAGACGGTGAATTATGCGATTAAAGGCGTATC TGATGAATTTAACATTAGTAAAGAAGGGGTCTTGACTTCCACATCCAAAG ATGTTGACAGTTTCAAAATCGTGATAACAGCAACTGATATTTGTGGAGAA TTTTCAGAGAAAGAATTTGTTTTCGAATCAAAGAAATGTTCTTGCGAAAG TGAAAATGGTGGTTTTTGTGAATGGAATGATGAAACGGGAAATGACATGA GATGTGTTTGTCCCGATGGTTGTGTCAAAGATGGgCATTGTTATACTGAC GGTGAAACTCATCATGCTGATTGGTGCGAAATTTGTGACGTAAACATGGG AAGTTTCGCTAAAAGAACGGACAACCTTCCACCagttttcaaaaacaaca aaaccagATTTTACGCCATGGTCGATCATAAAAATCCTTTCCAACTCATT GTAGAAGATCCTGAAAAAAAGCCAATAAATTTTAGTATCTCTGGCAATAA AGATGCCGGAATATGCGTCAATGAGTCTGGTATCCTCACCATCAAACCAC AGGATGGTTCTGAAGTCACCACAGTTGTGGTTCGAGCAATTGACATTTGC GGTGCTTTTACGGACCAAGAATTTGTCTTTGATACGCAAGTGTGTGAAGA TGACATCAATTATACTTACGCCTTCCGATGCAACATATGGGCGGAACACC ATGTCTGCAAAACCCACCCGTCTATGATGCGAAAACATTGCGCTGGTTCG TGTAAATATTGTGATAATTTGAATGATTACAAAACACTTTAAACACTTTA AGCAGTCAGTGTTTTCATCGTATGTTTTCATCTACCTGTACATAAAATTC TAAAGCTGGCATAGTcaagaaaaacagaaaatcaGGCATATGTCTTTTCG ATTCAGAAAGCGATTTTACTTTCTTGGAATACAACGTAATGGTCGATGAC GCCAAATATTACAATTGACGGGATAAGGATGAATTTGAAATGCAGGACGT GGCAATAGATTTTAGATACCTTGAGGGAACTAATTATGAATTCTTCAACA AACGGATTTTTGGATGTCACTTGGGTGAGGAATAAGATGCAATGGCGTGT ACGAAAGATCGTTAATAAAGCTATCAGTGTATTCGATGCGATTGTACTGA ACTCGTAAAACAATTCTGTTTAGGTTAAATCTATATTTCAAGACTGTAAA ATCTATATTTTTAGAATGAGTTGATTCCATCATACATTGAATGTATTGTT TGTAGATTTTCGAACTTGaacttttttgattattttcttttctaaataAA ATATCTTGGAA Run BLAST on NCBI transcript from alignment at sc0000061:181296..186123- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005889 ID=TCONS_00005889|Name=TCONS_00005889|organism=Clytia hemisphaerica|type=transcript|length=4828bp|location=Sequence derived from alignment at sc0000061:181296..186123- (Clytia hemisphaerica) TTCTCCAGGAAAGCACCAGATCTTGAAGAAAGGTTGACATTGATTTGCAA
AGAAGTACTTGTGGATCTATCAGAACCTGTCAGGAGGAACATTCGAAATA
AAGAAACAATCAACCCTTGAAAAATGACAATTCTAAGTTTTTAAAGTTGA
CCCTTTATTGATTGGAACACCTATTACGTTTATTTTGTAGTATATTGGAC
TAAGCATCTGATTTTTCTGTAATTTCGAATTGCATTATACTATAAGTTTT
TATGCTGCTTAATTTTGTAAAATAAGCACAGATTACTCCAAGGGGCCGTC
CACATAGTACGTACGCACTGAAATGTCGAAAATCGGATACCCCTCCCCCT
GTACGCAAATGGCTATACCCCCTGGTAAGTACGTACTTTTCATCCACCCC
CCCCCTCGGTTGAAGAAAATTTCGAATTCAATTCGTTTGGTTCGGACCTT
TATTTCATACATTAGACTCAATGATGTTTATTAAGAAACTTTTTCTATTC
CTTGGTGCGTATAAGAAACGTAAAAATCGACAAAAAACAAGCAAAAAAGG
GCTATGAAACACTTTTCTCTGCGTACGTACATTTTCCTTTGACCCCTCCC
CTTCCCCCGTACGCAAGCATACGCTTTTAAGAAGACTCCCTCTCCCCCTT
AGTGCGTACGTACTATGTGGACGGCCCTCAAGTGTGTTATGTTTTGGTAT
GTTTCGGACAAACCATATCCTGTTTTTGTTTTTGAGAAAGTTGAATTTTT
TATACAGTTGACTCTCTATAATTCGATCTTCAAGGGACCAAGAATTTTCT
TCGAATTAGAGAAAGATTCGTTACAGAGAGTATTCTTTATTTCTAGCTGA
GGGGATTATAATATTTTAGTTCAAATTATAGAAAGATTCGAAAAGTAGAG
GTTCGAATTAGCGAGAGTTCACTATAGTTTGTATTTATCTTTGATTTCTT
CGTCTCTCGATTCAAATGCGAAATCTCGAGCTTGCATTGTGTTTTTTTGT
GAAATTACTCTCGGGTGCCTAATAAACGTACATGTACGTATTTGTAACCA
TTAATTAAATTCAATGAACTAAATTAACTCACTAAGCAAAATTCTTGTAC
TCCATCTTCTTGCACTAATATTTTTCCGGGGTAGAAACTCCTAAATAATG
TACAAGCTACCCTGTCTGTTCTTTGTTTCTTTGTTAGTAGCCCCCTCCCC
TTGTTTCTGCATATTTTTAATTGCAATTATCATTTCAGTCATATGTCATT
TCGATTGTACAACAATCTAAGCATTATTGCATTTTTATTGATAATTTTTT
TATATTTTAAAGATAGAACTAAATAGAAAGTGACGAAAGAACCCAACCTA
AAATAATTCCTGAAATAAAAAACAAAGACTGAGGAGGAACTAAAAATACA
TGTTTTTTTTNATTTTATCTTTTCGATCCAGGGGCTGTGCGCGACATTCG
CAAGTTGACCCTGAGGACTGGTGTCAAATTTGTGACTCGAAACGTGGATT
TTATGTCAAAAGAACATTAAAAGGTTAGATTTATTGAACTTTTCAAGATC
ACGTAGAAATGTGTATCGTATTGTCGCGGTGGTTGTACCCCCGGAGGGGG
ATAGTGCAAATACGAGGGGCGTCAAAATCCACCAAGAGAAGTCATTTTGC
CGTGCTTTTTGTCTTTTTTTTCATTCAATAAATTCACATATACCTTTTAA
TAATCACAAATGATTTTAATCTCAATTGGTTCCGCATTAACGAGACAATC
CTGTGTTCCGGGGTACTATCGTGAGTGCTTTATGTGTGTCGTACATAAGC
CACTTCCATGAAAATGTATGATATTATCTTTTCCTTTTTAGACAACTCTC
CACCTATCTTCAGTAACCGCACGACATTCTTCGCATTCAGAGGACAAAAT
CATTCCTTTCAAATATTGGCTGAGGACCCTGAAAACAAGACGGTGAATTA
TGCGATTAAAGGCGTATCTGATGAATTTAACATTAGTAAAGAAGGGGTCT
TGACTTCCACATCCAAAGATGTTGACAGTTTCAAAATCGTGATAACAGCA
ACTGATATTTGTGGAGAATTTTCAGAGAAAGAATTTGTTTTCGAATCAAA
GAAATGTTCTTGCGAAAGTGAAAATGGTGGTTTTTGTGAATGGAATGATG
AAACGGGAAATGACATGAGATGTGTTTGTCCCGATGGTTGTGTCAAAGAT
GGGTACGATTTTTAACAAAAATTCGAAAATGTGTTTTAGGGCTATGTATG
TAACAGTGCATTTAAAATTTCAATCGTTTCATTTCCCTTGAACGGGTATT
ATTTGAAAAGTCATTTCTTAACTACTGTACCATCGGCTACATTCAACTAC
AATTATTTTCTAAATGTCATTTTGAATTATTTTTAGGCATTGTTATACTG
ACGGTGAAACTCATCATGCTGATTGGTGCGAAATTTGTGACGTAAACATG
GGAAGTTTCGCTAAAAGAACGGGTAAGTGGACTATCTCTTTTCTGACATC
TTTTCAGAGATCTTGTAGCCGAAAGAGCCGCTTGGACTCATTACAAACGT
AATCGAAAAAAAGGAACTAGACTAAAACAAAACTATACGATACAATACCA
ATAATGTCTTCTCTTATTTTTAATCTGGACAAGTAGTAACTATTCCTTCC
TGTTCCCTTCACAGACAACCTTCCACCAGTTTTCAAAAACAACAAAACCA
GATTTTACGCCATGGTCGATCATAAAAATCCTTTCCAACTCATTGTAGAA
GATCCTGAAAAAAAGCCAATAAATTTTAGTATCTCTGGCAATAAAGATGC
CGGAATATGCGTCAATGAGTCTGGTATCCTCACCATCAAACCACAGGATG
GTTCTGAAGTCACCACAGTTGTGGTTCGAGCAATTGACATTTGCGGTGCT
TTTACGGACCAAGAATTTGTCTTTGATACGCAAGGTTAGTTTAGTGAAGC
TCGACTTTCTCTGCTTTGGTTCATACTGCAGTTTCGGACATGAATGCGTC
ATCTTAGGACGCCTTGGCTGAAATTTCGATACTTGCCAATGTGAAATATT
TCTGAAAGATAATCCTATTTAAGATTCTACACATCCAGCTCATTTCAAGA
TTGTAATTTGCTCCTTACTTACGCATCCGATCCATCTCAAGATTATTACT
TTATCCTCAACCCTATTTCAACCTAGGCTTTTAGGAGCAGTTTAGAACTA
GGGGGGTGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAGTGG
GTCTTTTTGAATGAAATTTGGCACACAAGATCCTTGTCACATAAGGTAAC
TTTCAAGAAAAAAATTTTTTTGATGTCGTCATTCATCATGCGCGAAGTGA
GCAAAAACCGAAAATTTCCTATGTTCTTATAAATAGCTATTGTATTCTAA
CAAAGGCTTTAGAAAAAAGTTGGCTGAGTTTAAACTGCTTATTTCATCCT
AAATATTCAATAAATTAACGATAAACGATATATTTGACATAAAAAATAAA
TTTGTATTGGAAAAGTGTCAATTTTTTTTTATTTTGAAGCTAAATAAAAG
TTAGGAATTTACAGAAAATTTCACGTCAAACGGCAAAAGCTCTATTATTT
CAGGAGCTATTACCAATAATTTTACCTCCGAACAGGCCGAATAGGGTAAA
GCAAGAATATTCTTGCTTAAAATCATGAAAGCTTTAATTCATACTGCTCC
TAAACTTTCCTTACCCGTCAAACATCGAAGCCACAGACCTTGTTCATCAG
CTCGAATATTCATTTACATGCTAAAGCAACTTAGACCATGTTCAGATGTT
ACGGTTTCGTATCGCGCTGAATCGAAACGGGCTCGAAGCACTGTGTGAAC
GTCAAAATTCGAAGCGTCAAAAAGAAGACGTCAAAGAAGACGTCGAAAAG
AAGATGTCAAAAAGCAAAACAGATCGAAACGGCTGATACGTTTTCGCTCC
ACTATTTTCATTGGAACGGAACTGCTCCGTTTCGTTGCTCCGAAACGTTC
CGAAATCAATATGATCATTTCCATTCTTATCAAATATCATACCGGAGCGA
TACGAAACCGTAACGCCTGAATATAAATCTTAGAATTTTATGATAGGCTC
TCAAAGTTTTAACATAGCTGCCATTAAATTTTTCTTCTTTATTCTTCTTA
TATTCAGTGTGTGAAGATGACATCAATTATACTTACGCCTTCCGATGCAA
CATATGGGCGGAACACCATGTCTGCAAAACCCACCCGTCTATGATGCGAA
AACATTGCGCTGGTTCGTGTAAATATTGTGATAATTTGAATGATTACAAA
ACACTTTAAACACTTTAAGCAGTCAGTGTTTTCATCGTATGTTTTCATCT
ACCTGTACATAAAATTCTAAAGCTGGCATAGTCAAGAAAAACAGAAAATC
AGGCATATGTCTTTTCGATTCAGAAAGCGATTTTACTTTCTTGGAATACA
ACGTAATGGTCGATGACGCCAAATATTACAATTGACGGGATAAGGATGAA
TTTGAAATGCAGGACGTGGCAATAGATTTTAGATACCTTGAGGGAACTAA
TTATGAATTCTTCAACAAACGGATTTTTGGATGTCACTTGGGTGAGGAAT
AAGATGCAATGGCGTGTACGAAAGATCGTTAATAAAGCTATCAGTGTATT
CGATGCGATTGTACTGAACTCGTAAAACAATTCTGTTTAGGTTAAATCTA
TATTTCAAGACTGTAAAATCTATATTTTTAGAATGAGTTGATTCCATCAT
ACATTGAATGTATTGTTTGTAGATTTTCGAACTTGAACTTTTTTGATTAT
TTTCTTTTCTAAATAAAATATCTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005889-exon-sc0000061-1575043694:184601..186123 | TCONS_00005889-exon-sc0000061-1575043694:184601..186123 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1575043694:183922..184282 | TCONS_00005889-exon-sc0000061-1575043694:183922..184282 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1575043694:183652..183737 | TCONS_00005889-exon-sc0000061-1575043694:183652..183737 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1575043694:183190..183459 | TCONS_00005889-exon-sc0000061-1575043694:183190..183459 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1575043694:181296..181966 | TCONS_00005889-exon-sc0000061-1575043694:181296..181966 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1510915933:184601..186123 | TCONS_00005889-exon-sc0000061-1510915933:184601..186123 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1510915933:183922..184282 | TCONS_00005889-exon-sc0000061-1510915933:183922..184282 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1510915933:183652..183737 | TCONS_00005889-exon-sc0000061-1510915933:183652..183737 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1510915933:183190..183459 | TCONS_00005889-exon-sc0000061-1510915933:183190..183459 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1510915933:181296..181966 | TCONS_00005889-exon-sc0000061-1510915933:181296..181966 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1491911889:184601..186123 | TCONS_00005889-exon-sc0000061-1491911889:184601..186123 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1491911889:183922..184282 | TCONS_00005889-exon-sc0000061-1491911889:183922..184282 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1491911889:183652..183737 | TCONS_00005889-exon-sc0000061-1491911889:183652..183737 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1491911889:183190..183459 | TCONS_00005889-exon-sc0000061-1491911889:183190..183459 | Clytia hemisphaerica | exon |
TCONS_00005889-exon-sc0000061-1491911889:181296..181966 | TCONS_00005889-exon-sc0000061-1491911889:181296..181966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000061 | supercontig | sc0000061:181296..186123 - |
Blast
The following BLAST results are available for this feature:
|