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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059072 ID=TCONS_00059072|Name=TCONS_00059072|organism=Clytia hemisphaerica|type=transcript|length=1772bp
gataaaatcgattttgaatttcaagagAATGATGACTTCACGGGCTACGT
TTTGGATGTGGCGTGTTACAAACATTTAGATACCTCACTGATCGATGTTG
ATTTGCAACCACACTACGTTCGTGTTACAATGAAAGGGAAAATACTTCAA
CTCTCTCTCAACGAGGAAATCAGTCCAGATAAAAGTACAGCACAGCGATC
GCAAACCAGCGGACACTTACTTATCAACATGCCTAAGCTAAAATATATAC
TTGAAGGTCGTTGCTCTGGTTCTAGACGGCCGAAAACCGATTCTAAAGGC
GCGAAAATGGGCAGTAACGAGTTTCCGGATGCAACTAAAACTCGGGAAAC
GAAAACTATCGGTTGTGAATCTGGTAAAACGAATACCGACGACTTGCAAA
AGTCGGTTGAACGACTTGAAGTGACAGAGAACGAGAATAAAATTGATTAT
ACAAACATTGTAAAAGAGGAAAACGAAAAATCTAAAGATTTGAATTCGTT
TATTTTCAATGGAAAGAAGAGGAAAGGGGGATCaccaatgaaaaataata
aaaatgcaATTAGCGAAAATCAGTATGACGAACATTTCGTTGACGATTTA
GATGTACCACCTTTGGAGTGAGTTTTGTATGCAGATGGTTTATTGGCCAT
TTcgcagtcgcaaagcgtaatgggtaatcaggaccactgcgcgctaatga
cgacttactattggtccaaagttttgaacatttttgaacatttttgcgtc
taaccaacgggAGAACTGTTATCGAGGCGCAATCATTCCTGATTACCCAT
AATCCATTTAGACTATGAAATGACCTATGGCTGCATAGatcatttcacag
tcgaaatgaatcatgggtaattaAGATTGATTGTGCCTCTATGACGGCTT
CCCGTTGGTGAGACGCAGAAACAGCCAAAAATTTAGGCCAACAGAAAGTC
GTTATCACAGCGTgatggtcctgattacccatgattcatttcgactgtga
aatggtctATTCCAcattcttttcttcaaaaagtttcgATGGAAATATAT
AAAACTTATAAAActtcatataaaaatattttttaagcatgtttgatttt
aaatattttatttatttttcagaaaaatattatttgggTGTATGTATTGT
AAATACTAAAAAGAATACAAAGTTTTTGAGACAAGTTCTATTATTTTTTA
AGTAGGATACAGATAACATGATAATAATATATGACATGTAAGCATGGAAA
AATTAGTCTTTGAGTGATATAAATTATACATTGTTATAAAAATTTACGTA
TTATAAAGTATTTTATGGAATCAGCAGTTTTCCCCAAACATAGATTAATT
AGATAcccatttttttataagaacaaactatataagaaaacaaggcttca
atggccaaaaagTTCAGCACAActtaagaaaaatttaaggctttgcggac
taaAAAACACACAATTTGAGTGATAGACAAAAATAgtcgaaaaaaaaagt
gaaaataagtACATTCTAAGGCctgaaacttaaaaagttaagaatgtcct
aaggcttcaaaattttaaatgctcatataaaaaaacgtgttcacttaaaa
tttaaaatttatggTAGACAAAGATTTTAATATTAACACAGTAGagataa
aattaaatatttgttTCACTGAGCCCTTTTCATGCTGGGTTAGCGCGACA
CAGCGTAAATATTTTTGTGATCATCTGAGTGATAATAACCAGGGGGTGGG
TTCTTCTGATATGGTGGTAGCT Run BLAST on NCBI transcript from alignment at scaffold_316:172840..175774- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059072 ID=TCONS_00059072|Name=TCONS_00059072|organism=Clytia hemisphaerica|type=transcript|length=2935bp|location=Sequence derived from alignment at scaffold_316:172840..175774- (Clytia hemisphaerica)
GATAAAATCGATTTTGAATTTCAAGAGAATGATGACTTCACGGGCTACGT
TTTGGATGTGGCGTGTTACAAACATTTAGGTGAGAAAAACCCTTCTAACT
TTTTTATTAATTTTCGCGAAATTTAATCTTGCGTTTTTTTTACGAATGCA
TGTCATTTTCGCCAAAATAAACTTTCGAAATCGATTGAGACTCGATGACT
CGCAAAATTAAAAGCACGTAAAATTTTCGAGATCAAATCTTCAGCGTAAG
ATAAACACTGTAAATTAGCTTTTTTTAGCGTTTAAAAGGTCATTTTCAAC
AAATTATTGGCTGGTTTGCGAAGTTTAATTAATTTTTTTGAAATTTTGAG
GCTCCCGAAATTGAATCTTGTAAAAATTAATCCAATTAAAGTAATTTTTT
TTGTTTGTCAGTAACATAATAAAAACGTTAAAGTAATTTTTTTTTTGTCA
GTAACATAATAAAAACGTTCGTTACAACTCGAGAAAGTTTTTACGTTTTT
TTTTTTCACTTGGCAAGTGAATATACCTTCCCCGGGTCAACTCATGTCAT
GTGAGGGGAATTGGATAGACAGAAAAAGTATGTGCGGACGATAAGGGTCG
GTTTTTTCACCTTTCACTTTTCCAAAGTCTCTCTAAGAGTTACGAAAATC
AGAAAAAAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATTACCCAT
GATGCATTGCGCAAAAAAATTCACGGGCGATATTGACATTCCGTGAATTT
TTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCGA
TATCGTCTATTCAAAGTTGTCTCTGTAAGGGTCAAAAAAGTCTTGCAAGC
TACAATCATAGACAAAGTATTCAAGTTAAAGGGGATTTCCCTGCGAAATT
TTTAACATCACAAATGATTTTTAAGTGCGTTAAAGTACGGTTGGAAAGTA
GAGTTTTAACTCTGAGTTTTAACATGAGACTTAAGCCTTAGGACATTAGG
ATCTCAGGATTTAAAAGCTCAAATTTGCTCCAATAAGGCGTGGAGTATAG
CCCAGAAGCCAACGAACCCCTCCAAAAACGAATTATTCAATGAAAGAAAG
TGAAAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAAATTCTGAAAAAC
ATGAAAATATAAATATCTCAATATATTTTCATGATTGTAGTATGTAGTTC
AAATGATCGTTTAGGTTTGTTATATTTTTTATATCTTTGCAGATACCTCA
CTGATCGATGTTGATTTGCAACCACACTACGTTCGTGTTACAATGAAAGG
GAAAATACTTCAACTCTCTCTCAACGAGGAAATCAGTCCAGATAAAAGTA
CAGCACAGCGATCGCAAACCAGCGGACACTTACTTATCAACATGCCTAAG
CTAAAATATATACTTGAAGGTCGTTGCTCTGGTTCTAGACGGCCGAAAAC
CGATTCTAAAGGCGCGAAAATGGGCAGTAACGAGTTTCCGGATGCAACTA
AAACTCGGGAAACGAAAACTATCGGTTGTGAATCTGGTAAAACGAATACC
GACGACTTGCAAAAGTCGGTTGAACGACTTGAAGTGACAGAGAACGAGAA
TAAAATTGATTATACAAACATTGTAAAAGAGGAAAACGAAAAATCTAAAG
ATTTGAATTCGTTTATTTTCAATGGAAAGAAGAGGAAAGGGGGATCACCA
ATGAAAAATAATAAAAATGCAATTAGCGAAAATCAGTATGACGAACATTT
CGTTGACGATTTAGATGTACCACCTTTGGAGTGAGTTTTGTATGCAGATG
GTTTATTGGCCATTTCGCAGTCGCAAAGCGTAATGGGTAATCAGGACCAC
TGCGCGCTAATGACGACTTACTATTGGTCCAAAGTTTTGAACATTTTTGA
ACATTTTTGCGTCTAACCAACGGGAGAACTGTTATCGAGGCGCAATCATT
CCTGATTACCCATAATCCATTTAGACTATGAAATGACCTATGGCTGCATA
GATCATTTCACAGTCGAAATGAATCATGGGTAATTAAGATTGATTGTGCC
TCTATGACGGCTTCCCGTTGGTGAGACGCAGAAACAGCCAAAAATTTAGG
CCAACAGAAAGTCGTTATCACAGCGTGATGGTCCTGATTACCCATGATTC
ATTTCGACTGTGAAATGGTCTATTCCACATTCTTTTCTTCAAAAAGTTTC
GATGGAAATATATAAAACTTATAAAACTTCATATAAAAATATTTTTTAAG
CATGTTTGATTTTAAATATTTTATTTATTTTTCAGAAAAATATTATTTGG
GTGTATGTATTGTAAATACTAAAAAGAATACAAAGTTTTTGAGACAAGTT
CTATTATTTTTTAAGTAGGATACAGATAACATGATAATAATATATGACAT
GTAAGCATGGAAAAATTAGTCTTTGAGTGATATAAATTATACATTGTTAT
AAAAATTTACGTATTATAAAGTATTTTATGGAATCAGCAGTTTTCCCCAA
ACATAGATTAATTAGATACCCATTTTTTTATAAGAACAAACTATATAAGA
AAACAAGGCTTCAATGGCCAAAAAGTTCAGCACAACTTAAGAAAAATTTA
AGGCTTTGCGGACTAAAAAACACACAATTTGAGTGATAGACAAAAATAGT
CGAAAAAAAAAGTGAAAATAAGTACATTCTAAGGCCTGAAACTTAAAAAG
TTAAGAATGTCCTAAGGCTTCAAAATTTTAAATGCTCATATAAAAAAACG
TGTTCACTTAAAATTTAAAATTTATGGTAGACAAAGATTTTAATATTAAC
ACAGTAGAGATAAAATTAAATATTTGTTTCACTGAGCCCTTTTCATGCTG
GGTTAGCGCGACACAGCGTAAATATTTTTGTGATCATCTGAGTGATAATA
ACCAGGGGGTGGGTTCTTCTGATATGGTGGTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059072-exon-scaffold_316-1575043694:175696..175774 | TCONS_00059072-exon-scaffold_316-1575043694:175696..175774 | Clytia hemisphaerica | exon |
| TCONS_00059072-exon-scaffold_316-1575043694:172840..174532 | TCONS_00059072-exon-scaffold_316-1575043694:172840..174532 | Clytia hemisphaerica | exon |
| TCONS_00059072-exon-scaffold_316-1510915933:175696..175774 | TCONS_00059072-exon-scaffold_316-1510915933:175696..175774 | Clytia hemisphaerica | exon |
| TCONS_00059072-exon-scaffold_316-1510915933:172840..174532 | TCONS_00059072-exon-scaffold_316-1510915933:172840..174532 | Clytia hemisphaerica | exon |
| TCONS_00059072-exon-scaffold_316-1491911889:175696..175774 | TCONS_00059072-exon-scaffold_316-1491911889:175696..175774 | Clytia hemisphaerica | exon |
| TCONS_00059072-exon-scaffold_316-1491911889:172840..174532 | TCONS_00059072-exon-scaffold_316-1491911889:172840..174532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:172840..175774 - |
Blast
BLAST of TCONS_00059072 vs. Swiss-Prot (Human)
Match: TILB (Protein tilB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 1.635e-24 Identity = 75/205 (36.59%), Postives = 108/205 (52.68%), Query Frame = 1
Query: 4 KIDFEFQENDDFTGYVLDVACYKHLDTSLIDVDLQPHYVRVTMKGKILQLSLNEEISPDKSTAQRSQTSGHLLINMPKLKYILEGRCSGSRRPKTDSKGAKMGSNEFPDATKTRETKTIGCESGKTNTDDLQKSVERLEVTENENKI-DYTNIVKEENEKSKDLNSFIFNGKKRKGGSPMKNNKNAISENQYDEHFVDDLDVPPL 615
KIDF ++N+ +LD+A Y+++DTSLIDVD+QP YVRV +KGK QL L E+ PD S+A+RSQT+GHL+I MPK+ ++ G G R K K S+ + T TR K +E+LEV +++ D TNIV+E K +P + + I ++ D F D+ +VPPL
Sbjct: 305 KIDFSLKDNE--KQIILDLAVYRYMDTSLIDVDVQPTYVRVMIKGKPFQLVLPAEVKPDSSSAKRSQTTGHLVICMPKVGEVITG---GQRA----FKSMKTTSDRSREQTNTR-----------------SKHMEKLEVDPSKHSFPDVTNIVQE------------------KKHTPRRRPEPKIIPSEEDPTFEDNPEVPPL 465
The following BLAST results are available for this feature:
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