TCONS_00059023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059023
Unique NameTCONS_00059023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059023 ID=TCONS_00059023|Name=TCONS_00059023|organism=Clytia hemisphaerica|type=transcript|length=671bp
CAACGtcttaaggtgttttgagggtgttaaaagtgaaaaattttcttcgt
cgcccaaccatggcgggcgacatttttttcaaaaatatctgcTCCCCTCC
CacactcaaaatggctcgccggggcccatgtGTATAAtttacccacactc
ttgtatcagagtaatggtacccaattcccctcacatggcatgggttgacc
cgggtgaaggtatattcacttgccaaTTGAATCGTAAAAAGACACGGTgt
atcgaactcgggcctcccAGGCGGGATTCAAGAATGATACCCACCATTCC
ACTTACGCAATTAGAAAATAAAGCTCTATAATGCGAGTAATGTATAATGT
ATACGTTGTATATAATACGGTAAATACGGTTGTGCTGAGAACTGGAGTGA
GATGATATTGCAAAAGATGCTTTAGATAATATCCAAGTTCATTTCTCAAG
AAGAGATGCAAATTAATCGATTTGTATTTTCGAATTTACATATAAAGATA
TTCAGAATTTTATATTTCGACTAAGTTAAGagcaaaacaaattttgatag
aatataaTATAAACGAACAGATGGATTTATGTACATAATGTAATAGTATA
TATGTTTATTGCCTCGTTATCATTTGACCCCGAATATATCAAATTAGGGT
CGACagctcgggggggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_315:239404..240074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059023 ID=TCONS_00059023|Name=TCONS_00059023|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_315:239404..240074 (Clytia hemisphaerica)
ccccccccccccgagctGTCGACCCTAATTTGATATATTCGGGGTCAAAT
GATAACGAGGCAATAAACATATATACTATTACATTATGTACATAAATCCA
TCTGTTCGTTTATAttatattctatcaaaatttgttttgctCTTAACTTA
GTCGAAATATAAAATTCTGAATATCTTTATATGTAAATTCGAAAATACAA
ATCGATTAATTTGCATCTCTTCTTGAGAAATGAACTTGGATATTATCTAA
AGCATCTTTTGCAATATCATCTCACTCCAGTTCTCAGCACAACCGTATTT
ACCGTATTATATACAACGTATACATTATACATTACTCGCATTATAGAGCT
TTATTTTCTAATTGCGTAAGTGGAATGGTGGGTATCATTCTTGAATCCCG
CCTgggaggcccgagttcgatacACCGTGTCTTTTTACGATTCAAttggc
aagtgaatataccttcacccgggtcaacccatgccatgtgaggggaattg
ggtaccattactctgatacaagagtgtgggtaaaTTATACacatgggccc
cggcgagccattttgagtgtGGGAGGGGAgcagatatttttgaaaaaaat
gtcgcccgccatggttgggcgacgaagaaaatttttcacttttaacaccc
tcaaaacaccttaagaCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037174XLOC_037174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059023-exon-scaffold_315-1491911889:239404..240074TCONS_00059023-exon-scaffold_315-1491911889:239404..240074Clytia hemisphaericaexon
TCONS_00059023-exon-scaffold_315-1510915933:239404..240074TCONS_00059023-exon-scaffold_315-1510915933:239404..240074Clytia hemisphaericaexon
TCONS_00059023-exon-scaffold_315-1575043694:239404..240074TCONS_00059023-exon-scaffold_315-1575043694:239404..240074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:239404..240074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0800167	0.0779818	0.611874	0.708165	0.72717	0.165244	0.394911	0.563444	0.390157	0.324341	0.622402	0.359712	0.676724	0.535075	1.25289	0.765061	1.03974	1.12716	0.819687	0.531413	0.819262	0.653319	0.616335	0.970799	1.32119	1.4061	0.852828	0.574823	0.0864779	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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