|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058948 ID=TCONS_00058948|Name=TCONS_00058948|organism=Clytia hemisphaerica|type=transcript|length=940bp
ggttcttaaaaaaatcaagcgtgtacaatattttgatttggaaTCAAAAT
TCGGTGCTTTGCTTCTTCGATCTTCTATTAATCTCCTTTGagttgtttct
ttttctttgtacgCAACCTAACCAGTTAAAAATGTACTTTCGAAAATCTT
TGAATCTTCCTGCGTAGATAAACACATTAACGACATTATTGGtataaaac
aaaatcaatagCCAAGTCatcatctctttatgttttgCGAAAGTGTTTTT
TGATTCGTTAATATTTTTCACATTCACTATCGTTGCACCAACTAGCGTTG
GCAAAACACATACCAGATATGAGATAACCGAATAGATGACCACTTTTTCT
GATTTGTCGGTCCTGAGCTTAGCATGCAGATTCTTTTTCCGATATCTGTT
TtctttcacgaaaaatatttttaatcgaacACACAGAACCACCATAACTA
AACATGGTAGGGTAATTTTCATTTGCGTTTTCAAAGTGTTCAAGAAAGAA
GCTCTAACGGTTCTCCCCTGCATAAAACACTTATTTTCGTGTAAAACGAC
TGAGctgaaagaaaacgaaagtgaaactgatGTGGTCAGGATCCATGTTA
AAGCTAAATAAATTTGTATGATGCGTTTTCTCAACGTTTTGAAAGGATTT
GTGAAAGTCCGATATCTTTCGTAAGTCATACCACATAAAATCCATGCGGA
GTTCACTCCACTTAATCGGCCGATCGGATAAAAATAGTTGCACGCTAATT
GGCCAAATATCCATTCACCGTAGTTGATAATCTCGGTGATGGTCATTGTT
GGTACCAACAGACAGCACAAGAGATCAACGAACGATAAATGAGCGATGAA
ATAACGATAATTTGATTTCATTCGTTTTGTCTTGAAACCAAAATATATGA
ATGAAACAAAATTCATGAAACAGCCAATCGTTAGTAGGAG Run BLAST on NCBI protein sequence of TCONS_00058948-protein >TCONS_00058948-protein ID=TCONS_00058948-protein|Name=TCONS_00058948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
LLLTIGCFMNFVSFIYFGFKTKRMKSNYRYFIAHLSFVDLLCCLLVPTMT
ITEIINYGEWIFGQLACNYFYPIGRLSGVNSAWILCGMTYERYRTFTNPF
KTLRKRIIQIYLALTWILTTSVSLSFSFSSVVLHENKCFMQGRTVRASFL
NTLKTQMKITLPCLVMVVLCVRLKIFFVKENRYRKKNLHAKLRTDKSEKV
VIYSVISYLVCVLPTLVGATIVNVKNINESKNTFAKHKEMMTWLLILFYT
NNVVNVFIYAGRFKDFRKYIFNWLGCVQRKRNNSKEINRRSKKQSTEF Run BLAST on NCBI transcript from alignment at scaffold_314:775005..775944 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058948 ID=TCONS_00058948|Name=TCONS_00058948|organism=Clytia hemisphaerica|type=transcript|length=940bp|location=Sequence derived from alignment at scaffold_314:775005..775944 (Clytia hemisphaerica)
CTCCTACTAACGATTGGCTGTTTCATGAATTTTGTTTCATTCATATATTT
TGGTTTCAAGACAAAACGAATGAAATCAAATTATCGTTATTTCATCGCTC
ATTTATCGTTCGTTGATCTCTTGTGCTGTCTGTTGGTACCAACAATGACC
ATCACCGAGATTATCAACTACGGTGAATGGATATTTGGCCAATTAGCGTG
CAACTATTTTTATCCGATCGGCCGATTAAGTGGAGTGAACTCCGCATGGA
TTTTATGTGGTATGACTTACGAAAGATATCGGACTTTCACAAATCCTTTC
AAAACGTTGAGAAAACGCATCATACAAATTTATTTAGCTTTAACATGGAT
CCTGACCACatcagtttcactttcgttttctttcagCTCAGTCGTTTTAC
ACGAAAATAAGTGTTTTATGCAGGGGAGAACCGTTAGAGCTTCTTTCTTG
AACACTTTGAAAACGCAAATGAAAATTACCCTACCATGTTTAGTTATGGT
GGTTCTGTGTgttcgattaaaaatatttttcgtgaaagaAAACAGATATC
GGAAAAAGAATCTGCATGCTAAGCTCAGGACCGACAAATCAGAAAAAGTG
GTCATCTATTCGGTTATCTCATATCTGGTATGTGTTTTGCCAACGCTAGT
TGGTGCAACGATAGTGAATGTGAAAAATATTAACGAATCAAAAAACACTT
TCGcaaaacataaagagatgatGACTTGGctattgattttgttttataCC
AATAATGTCGTTAATGTGTTTATCTACGCAGGAAGATTCAAAGATTTTCG
AAAGTACATTTTTAACTGGTTAGGTTGcgtacaaagaaaaagaaacaact
CAAAGGAGATTAATAGAAGATCGAAGAAGCAAAGCACCGAATTTTGAttc
caaatcaaaatattgtacacgcttgatttttttaagaacc Coding sequence (CDS) from alignment at scaffold_314:775005..775944 >TCONS_00058948 ID=TCONS_00058948|Name=TCONS_00058948|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_314:775005..775944 (Clytia hemisphaerica)
CTCCTACTAACGATTGGCTGTTTCATGAATTTTGTTTCATTCATATATTT
TGGTTTCAAGACAAAACGAATGAAATCAAATTATCGTTATTTCATCGCTC
ATTTATCGTTCGTTGATCTCTTGTGCTGTCTGTTGGTACCAACAATGACC
ATCACCGAGATTATCAACTACGGTGAATGGATATTTGGCCAATTAGCGTG
CAACTATTTTTATCCGATCGGCCGATTAAGTGGAGTGAACTCCGCATGGA
TTTTATGTGGTATGACTTACGAAAGATATCGGACTTTCACAAATCCTTTC
AAAACGTTGAGAAAACGCATCATACAAATTTATTTAGCTTTAACATGGAT
CCTGACCACatcagtttcactttcgttttctttcagCTCAGTCGTTTTAC
ACGAAAATAAGTGTTTTATGCAGGGGAGAACCGTTAGAGCTTCTTTCTTG
AACACTTTGAAAACGCAAATGAAAATTACCCTACCATGTTTAGTTATGGT
GGTTCTGTGTgttcgattaaaaatatttttcgtgaaagaAAACAGATATC
GGAAAAAGAATCTGCATGCTAAGCTCAGGACCGACAAATCAGAAAAAGTG
GTCATCTATTCGGTTATCTCATATCTGGTATGTGTTTTGCCAACGCTAGT
TGGTGCAACGATAGTGAATGTGAAAAATATTAACGAATCAAAAAACACTT
TCGcaaaacataaagagatgatGACTTGGctattgattttgttttataCC
AATAATGTCGTTAATGTGTTTATCTACGCAGGAAGATTCAAAGATTTTCG
AAAGTACATTTTTAACTGGTTAGGTTGcgtacaaagaaaaagaaacaact
CAAAGGAGATTAATAGAAGATCGAAGAAGCAAAGCACCGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058948-exon-scaffold_314-1491911889:775005..775944 | TCONS_00058948-exon-scaffold_314-1491911889:775005..775944 | Clytia hemisphaerica | exon |
| TCONS_00058948-exon-scaffold_314-1510915933:775005..775944 | TCONS_00058948-exon-scaffold_314-1510915933:775005..775944 | Clytia hemisphaerica | exon |
| TCONS_00058948-exon-scaffold_314-1575043694:775005..775944 | TCONS_00058948-exon-scaffold_314-1575043694:775005..775944 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:775005..775944 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
