TCONS_00059273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059273
Unique NameTCONS_00059273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059273 ID=TCONS_00059273|Name=TCONS_00059273|organism=Clytia hemisphaerica|type=transcript|length=1248bp
CTTTGATTTATTTAAAAAGTTAAAAATGTTAAAAATGAATCAGGAGCATA
TCATCTACTAACCTAATAATGTTGTATTTGTTGTAGACAGAGGAGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGT
AGTAGGCGGAGGGGTGGTTGTCGTAGTTGTGGTAAGCGGAGGCgtggttg
ttgtagttgttgttgTAGTAGGCGGAGGGGTGGTTGTCGTAGTTGTGGTA
GGCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGTGGTTGTCGT
AGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCG
TGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTA
GGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGT
AGTTGTAGTAGGCGGGGGCGTGGTTGTAGTAGTAGTTGTAGTAGGCAGAG
GggtggttgttgtagttgtgGTAGGCGGAGGcgtggttgttgtagttgta
gtAGGCGGAGGcgtggttgttgtagttgtgGTAAGCGGAGGcgtggttgt
tgtagttgtagtAGGCGGAGGCGTGGTTGTCGTAGTTGTTGTAGGCGGAG
GCGTAGTTGTAGTAGTTGTGGTAGGCGGAGGcgtggttgttgtagttgtg
GTAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGGCTTAAGCGTTGTTTT
TGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTACGCTGAAACTTGGTTG
TTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTGGTTGTGGTAAGCTGT
GGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAATGTGGTAGG
TGGAAATGTTGCTGCTGTTATtgtcttttttgtactttgaagCTCTTGCA
TATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTTCGTGTCTCATTCTGT
AAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAACTTGCAAAGGACAGA
AAAAGTTGCAGATTGTTTGTATGAAATCAATtcctttgtaaaatatttac
atTAAACACAATGGCCACATTTTGGTTTGCCTGCCCCCTTTGTTTATCTA
AAAATGCCgttcaaaatatctcaaaaacttATTCTTTGGGGTTAGAATAC
CTTAACtaactgacctttatataccctggaccaagtttctcaatcccg
Run BLAST on NCBI

transcript from alignment at scaffold_323:7428..8801+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059273 ID=TCONS_00059273|Name=TCONS_00059273|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at scaffold_323:7428..8801+ (Clytia hemisphaerica)
CTTTGATTTATTTAAAAAGTTAAAAATGTTAAAAATGAATCAGGAGCATA
TCATCTACTAACCTAATAATGTTGTATTTGTTGTAGACAGAGGAGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGT
AGTAGGCGGCGGAGTGGTTGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTG
TTGTAGTTGTAGTAGGCGGTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTA
GGCGGAGGGGTGGTTGTCGTAGTTGTGGTAAGCGGAGGCGTGGTTGTTGT
AgttgtagtAGGCGGAGAggtggttgttgtagttgttgttgTAGTAGGCG
GAGGGGTGGTTGTCGTAGTTGTGGTAGGCGGAGGcgtggttgttgtagtt
gtagtAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGT
TGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCG
GAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTT
GTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGT
TGTAGTAGTAGTTGTAGTAGGCAGAGGggtggttgttgtagttgtgGTAG
GCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGcgtggttgttgta
gttgtgGTAAGCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGT
GGTTGTCGTAGTTGTTGTAGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAG
GCGGAGGcgtggttgttgtagttgtgGTAGGCGGGGAAGTGTTTGTTGTA
GTTGTTTTAGGCTTAAGCGTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGT
GGTTGTTGTACGCTGAAACTTGGTTGTTGTACTTTTAGTAGGCCAGTTCC
AGGTTGTTGTGGTTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGA
AATGTGGTAGGTGGAAATGTGGTAGGTGGAAATGTTGCTGCTGTTATtgt
cttttttgtactttgaagCTCTTGCATATCATTTCTTTGTTCTGCTGTCT
GTCGCCCAGTTCGTGTCTCATTCTGTAAAAAGGTAAGTTAAACTCTTTAC
AGTACCGCCAACTTGCAAAGGACAGAAAAAGTTGCAGATTGTTTGTATGA
AATCAATtcctttgtaaaatatttacatTAAACACAATGGCCACATTTTG
GTTTGCCTGCCCCCTTTGTTTATCTAAAAATGCCgttcaaaatatctcaa
aaacttATTCTTTGGGGTTAGAATACCTTAACtaactgacctttatatac
cctggaccaagtttctcaatcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037322XLOC_037322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059273-exon-scaffold_323-1491911889:7428..7582TCONS_00059273-exon-scaffold_323-1491911889:7428..7582Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1510915933:7428..7582TCONS_00059273-exon-scaffold_323-1510915933:7428..7582Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1575043694:7428..7582TCONS_00059273-exon-scaffold_323-1575043694:7428..7582Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1491911889:7679..7716TCONS_00059273-exon-scaffold_323-1491911889:7679..7716Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1510915933:7679..7716TCONS_00059273-exon-scaffold_323-1510915933:7679..7716Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1575043694:7679..7716TCONS_00059273-exon-scaffold_323-1575043694:7679..7716Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1491911889:7747..8801TCONS_00059273-exon-scaffold_323-1491911889:7747..8801Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1510915933:7747..8801TCONS_00059273-exon-scaffold_323-1510915933:7747..8801Clytia hemisphaericaexon
TCONS_00059273-exon-scaffold_323-1575043694:7747..8801TCONS_00059273-exon-scaffold_323-1575043694:7747..8801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_323supercontigscaffold_323:7428..8801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.69552	1.68635	0.681228	0.36253	5.52426	4.39384	3.90073	5.56088	0.572828	2.3615	2.50903	0.744052	0.811655	1.44312	1.08917	1.28716	2.12619	3.03438	1.18953	0.958467	1.22669	1.55639	3.88712	3.47543	12.647	8.69969	2.71726	1.56108	4.36988	4.69276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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