TCONS_00058839 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058839
Unique Name	TCONS_00058839
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2435

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_314:441250..456501+

transcript sequence

>TCONS_00058839 ID=TCONS_00058839|Name=TCONS_00058839|organism=Clytia hemisphaerica|type=transcript|length=2435bp
CGTACACCATTatgaattcaaaaaattaaaaatgctgaCGATGCAAATAC
GTCAACTTACGAGCttttgaccaatcaaattgGTCCACTTATACCAATTT
GGCCAATCGGGTCAAAACACGAAAactgattcaatttttctgGTCATATA
GCTCGAAAGAACACACGTTGATCTACAAAATCTCGTCCAAATCTAACTGG
AAGGTCGACTGGTGTTGTGGTTGTCCAACACTGAAACGTTTTCAAAGATG
AAGTGTATCTATTTCATTGCGCTACTTGTTGTAGCATGTTCTGTTTATtg
tgaagaagaaaagaaagaggaaaaagataaaaaagaaagtATCGGAACAG
TTGTTGGTATTGATCTTGGAACAACTTATTCTTGtgttggagtcttcaaa
aacgGACGTGTTGAAATCATCCCAAATGACCAAGGTAACCGTATCACTCC
ATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATTGATTGGTGATGCTG
CCAAGAATCAGTTGACATCCAACCCTGAAAACACTGTCTTTGATGCCAAA
CGTTTGATTGGACGTGAATGGAGTGAAAAATCAGTTCAATCTGACATCAA
ATATTTCCCATTTAAAGTCGTGCAGAAGGGAGGCAAACCACACATTACAG
TCGATGTCAAAGAAGGAGAAGCAAAAACTTTTGCTGCTGAAGAAATCAGT
GCTATGGTCTTGAACAAAATGAAgGACATTGCTGAAGCTTACTTGGGAAA
GAAAGTAACCCATGCCGTTGTCACTGTCCCAGCCTACTTCAATGATGCCC
AACGTCAAGCCACCAAGGATGCTGGAACCATCTCTGGATTAAATGTTATG
AGAATCATTAACGAACCAACTGCTGCTGCCATTGCTTACGGTTTGGACAA
GAAAGAAGGAGAAAAGAACATCCTTGTCTTCGATTTGGGAGGTGGTACCT
TCGATGTTTCCCTTTTGACCATTGACAATGGGGTCTTTGAAGTTGTTTCC
ACCAGTGGAGATACTCATCTTGGAGGTGAAGATTTCGATCAACGTGTCAT
GgaatattttgtcaaaatctacaaaaagaaGAAGGGAAAAGACATCAGAA
AGGACAACCGTGCCCTCCAAAAACTCCGACGTGAAGTTGAAAAAACCAAA
CGTGCCCTCAGTACTGCCCATCAAGCCAGAGTTGAAGTTGAATCTTTGTT
TGATGGTGAAGACTTCTCTGAAACCTTAACCAGAGCTAAATTCGAAGAAT
TGAACATGGATCTTTTCAAATCAACCCTCAAACCAGTTAAGCAAGTCTTG
GATGACTCTGGTCTTAAAAAATCGGAAATTGACGAAATTGTCCTTGTTGG
TGGTTCCACTCGTATCCCCAAAGTCCAATCTTTGGTCAAAGATTTCTTCG
GTGGAAAAGAACCAAGTAGAGggaTCAACCCCGACGAAGCAGTGGCATAT
GGTGCAGCCATTCAAGGCGGTATATTAAGTGGTGAGGAAAAGCTAGATAT
TGCTGTGATCGATATCAACCCACTCACATTGGGAATCGAGACTGTTGGTG
GAGTGATGACGAAATTGATCGATCGAAATACTGTAGTTCCTACTAAAAAG
TCACAAGTTTTCTCAACGTCGGCAGATAGACAACCGACTGTCACCATCAA
AGTCTTCGAAGGAGAACGTCCAATGACCAAGGATAACCATCTTTTGGGAA
AATTCGATTTGAACGGAATCCCACCAGCACCAAGAGGTGTTCCACAAATT
GAAGTCACCTTCGAAATCGACGTCAACGGTATCTTGAGAGTCGGTGCTGA
AGACAAAGGAACCGGCAAGAAAGAAAAGATCACCATTACCAACGATCAAA
ACAGATTGTCTCCTGAAGATATCGAACGTATGGTCAACGAAGCTGAACAA
TTTGCTGACGAAGACAAGAAAGTCAAAGAAAAGGTCGAAGCTAAGAACGA
ATTTGAAAGCTATGCTTACTCATTGAAAAACCAAATTGGAGATAAGGACA
AATTAGGTAGCAAATTGAGCGAAGAAGACAAAGCTGCTTTAGAAAAAGCT
ACCGACGAAGCTGTCTCATGGTTGGAAAGCCATGCTGATGCTTCAACTGA
AGAActtaaagaagaaaagaagaaattggAGGATGTAGCCACTCCAATTG
TTAGTAAAATCTACCAACAACAAGGTGGACAACCAGGAGGAGAGGGTGAG
GCTCCAAACCCAGGATCTGAAGAGAAAGAAGACAAAGATGAACTTTAGAT
CTTTTTATATAGCTAGgtttataaaatttttacaaaattctttagTTTAA
TCTGCGGATATTTCTTGGATGGATTTTGCNcttagagagactgaattttg
gtgaaaaggtgacccttagagagactcagtgtagaaaaacccaaccctta
gagagactttttcacaaaaaatttctataacgggc

Run BLAST on NCBI

transcript from alignment at scaffold_314:441250..456501+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058839 ID=TCONS_00058839|Name=TCONS_00058839|organism=Clytia hemisphaerica|type=transcript|length=15252bp|location=Sequence derived from alignment at scaffold_314:441250..456501+ (Clytia hemisphaerica)
CGTACACCATTatgaattcaaaaaattaaaaatgctgaCGATGCAAATAC
GTCAACTTACGAGCttttgaccaatcaaattgGTCCACTTATACCAATTT
GGCCAATCGGGTCAAAACACGAAAactgattcaatttttctgGTCATATA
GCTCGAAAGAACACACGTTGATCTACAAAATCTCGTCCAAATCTAACTGG
AAGGTCGACTGGTGTTGTGGTTGTCCAACACTGAAACGTTTTCAAAGATG
AAGTGTATCTATTTCATTGCGCTACTTGTTGTAGCATGTTCTGTTTATtg
tgaagaagaaaagaaagaggaaaaagataaaaaagaaagtATCGGAACAG
TTGTTGGTATTGATCTTGGAACAACTTATTCTTGGTAAGATTTTCACTTC
TCAGCAAGACAAGACaagtttcaattaaattaagcCCAGCTATCGAATTC
TCTGACACAAAAGTAAAAcaaggaaaaacaaaaattttgtatCTAATTTC
TGGGAAGTTCATAATTGGTTTTTTTCTTGGGTATAATACAATCAGATCTG
ACATTTGGTCTGCTCTAATCGAGTAGTGAAATCTGTCTtgacttaaaggg
ataatcagatggtttgagatatttgtcGCGTGGAGTCTATCTATTGTCCT
GAGCtaaacctcaaaatatttttgcctaaatattttccaaagttgagaTA
TGTTATAAACTACaagtttttgacaaaaatacttgGCAATTTTATTCAAA
ACCACTGAGggtttcttcaggcaaaaaaattcaaaccatctgattatttC
TTTAAGAGTTATATAGTAATATTTGGTGAAATCTAAATCCTAACGTTTCA
AGTggtttaattattttttcagtgttggagtcttcaaaaacgGACGTGTT
GAAATCATCCCAAATGACCAAGGTAACCGTATCACTCCATCATATGTTGC
TTTCACCAGTGAAGGTGAAAGATTGATCGGTGATGCTGCCAAANTCAGtg
ttggagtcttcaaaaacgGACGTGTTGAAATCATCCCAAATGACCAAGGT
AACCGTATCACTCCATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATT
GATTGGTGATGCTGCCAAGAATCAGTTGACATCCAACCCTGAAAACACTG
TCTTTGATGCCAAACGTTTGATTGGACGTGAATGGAGTGAAAAATCAGTT
CAATCTGACATCAAATATTTCCCATTTAAAGTCGTGCAGAAGGGAGGCAA
ACCACACATTACAGTCGATGTCAAAGAAGGAGAAGCAAAAACTTTTGCTG
CTGAAGAAATCAGTGCTATGGTCTTGAACAAAATGAAggtaaatagaaaa
aaatgagaTATCAATTTGTGTTAAgttaatttttaaattaatgTTTTCCT
GTCTTCGTTTTGATGCTCAAGTTTTATGAAATCTCATAGTGATTCACAAA
AAGGTCTGTCTCTGCCTCACCTTGTAAAACATTCAgcaataatttttgtt
atatTCCATAGGACATTGCTGAAGCTTACTTGGGAAAGAAAGTAACCCAT
GCCGTTGTCACTGTCCCAGCCTACTTCAATGATGCCCAACGTCAAGCCAC
CAAGGATGCTGGAACCATCTCTGGATTAAATGTTATGAGAATCATTAACG
AACCAACTGCTGCTGCCATTGCTTACGGTTTGGACAAGAAAGAAGGAGAA
AAGAACATCCTTGTCTTCGATTTGGGAGGTGGTACCTTCGATGTTTCCCT
TTTGACCATTGACAATGGGGTCTTTGAAGTTGTTTCCACCAGTGGAGATA
CTCATCTTGGAGGTGAAGATTTCGATCAACGTGTCATGgaatattttgtc
aaaatctacaaaaagaaGAAGGGAAAAGACATCAGAAAGGACAACCGTGC
CCTCCAAAAACTCCGACGTGAAGTTGAAAAAACCAAACGTGCCCTCAGTA
CTGCCCATCAAGCCAGAGTTGAAGTTGAATCTTTGTTTGATGGTGAAGAC
TTCTCTGAAACCTTAACCAGAGCTAAATTCGAAGAATTGAACATGGATCT
TTTCAAATCAACCCTCAAACCAGTTAAGCAAGTCTTGGATGACTCTGGTC
TTAAAAAATCGGAAATTGACGAAATTGTCCTTGTTGGTGGTTCCACTCGT
ATCCCCAAAGTCCAATCTTTGGTCAAAGATTTCTTCGGTGGAAAAGAACC
AAGTAGAGGTAAATAACATTTTGATTAAAGATATGGTTTATACCCTACTT
TTTGCCAAAACACACGTTTTGAAGCAAAACAGCACTTACACTGCTTAGTT
CTCTCTAAAATTTAAGGTACTTCGCTCCTATAAATGTGCACTGTTAGATT
ATTACACTAAAAACTTAAACTAAGAAAATTGTTTCCTNATTTTTAGGGAT
CAACCCCGACGAAGCAGTGGCATATGGTGCAGCCATTCAAGGCGGTATAT
TAAGTGGTGAGGAAAAGCTAGATATTGCTGTGATCGATATCAACCCACTC
ACATTGGGAATCGAGACTGTTGGTGGAGTGATGACGAAATTGATCGATCG
AAATACTGTAGTTCCTACTAAAAAGTCACAAGTTTTCTCAACGTCGGCAG
ATAGACAACCGACTGTCACCATCAAAGTCTTCGAAGGAGAACGTCCAATG
ACCAAGGATAACCATCTTTTGGGAAAATTCGATTTGAACGGAATCCCACC
AGCACCAAGAGGTGTTCCACAAATTGAAGTCACTTTCGAAATCGACGTCA
ACGGTATCTTGAGAGTCAGTGCTGAAGACAAAGGAACCGGCAAGAAAGAA
AAGATCACCATTACCAACGATCAAAACAGATTGTCTCCTGAAGATATCGA
ACGTATGGTCAACGAAGCTGAACAATTTGCTGACGAAGACAAGAAAGTCA
AAGAAAAGGTCGAAGCTAAGAACGAATTTGAAAGCTATGCTTACTCATTG
AAAAACCAAATTGGAGATAAGGACAAATTAGGTAGCAAATTGAGCGAAGA
AGACAAAGCTGCTTTAGAAAAAGCTACCGACGAAGCTGTCTCATGGTTGG
AAAGCCATGCTGATGCTTCAACTGAAGAActtaaagaagaaaagaagaaa
ttggAGGATGTAGCCACTCCAATTGTTAGTAAAATCTACCAACAACAAGG
TGGACAACCAGGAGGAGAGGGTGAGGCTCCAAACCCAGGATCTGAAGAGA
AAGAAGACAAAGATGAACTTTAGATCTTTTTATATAGCTAGgtttataaa
atttttacaaaattctttagTTTAATCTGCGGATATTTCTTGGATGGATT
TTGCACCCACAAATTACTACTGACACAAAAAGGTTTTTATActtgaattt
ttaagaaaagtgGTTAAATTATACGTTGAAAGttcttcaaatttatttat
tgattttattatcTGTTTTTGAGGAGACGTAtaattaattcatgatattg
tATGTATAATGGATTTTGTTCCTACAGGTACACAAAagcaaaaaacaaat
ttctatATTGTTAAAATAAAGAGTTTGTTTCACTGTCATTTTTTGCCCTT
CTGCGATACTTTTCCGAAATGCTAGGAGTGGGTTACGAGcggttttaaat
attttagagGCTTTTGTGAGAGACAGGAAAGAAAGGACAGCAAAATTGCA
CTTTTTCGACAGAAATGATCTTAGCTCTTTTATTTTAACCTACAGTAAGC
AATCCATTCGGTATGAAATAGAAGTTACTTCCTTATTATTAAGGCTCCAT
TATTTTCAACTTCTTAATATCTCCCTACCTAAAGGGAACAAATTAACTTA
TTTTcgggaatcggccctttttaaaCTATTCTTTAATTTTCCTGGGGAta
ttagtccgggagccaaatcctatatctccttaaataagcacttttgctta
acccaaaaTTCTACAGGATAAANGATTTTCAATGTCTAATATTAAAAAGT
GATAATTTTATATAATCCGGGAGCCAAAcctgaaaaatggcattttgctt
aacccaagattttacaggataaactatacatttttggaatccttaactat
cctagtttaagaaatggtcagtccccaaagctaactcctggtcaattttt
catactgggtcCAAATTtaggtactttttaccctttgtaaggatttgtta
aggaaaatatctttccatgtatgatataatttgctatatctcatgaatga
attgaccaattgctttaaaactttgCCAAAAGTTTTCAGATAGATTGTTG
ATCATCattggcaaaagatttttgcgaaaaattatttttgggggtTTACC
TGGGGCAAAATAGGGAAAATTTAggtattttcactgaattttgacactta
taagactgggacctaccaaaacaacttttaatgaggcacaagctttgtgt
tatgataaaatttgatgcgaTACACCAGAAAAATGTCTTTATTTAGTTTC
ATTTTTGACGCTTCAGGGGGGTAAAAATGtccattttattgaatttttac
ataatttgagcaattttcactgcttatctcgcctaaaatatcttcgaaaa
tagttttaacttgatcttGGTGTAATATACTCTGGAAAATTACAATTTTG
TCTTAAGCTAAACCACTGTAACTATGCAGCTGtaacttcagttaaaagca
TCGAAATGTTGTGTAGTTGTCTTTAGAGCCTTTAAAAGGACTAAGAAATG
ATTGAATGGTAATTTAAAGTTTGTTAGGGCTGGTTTttatccttacaaag
ggtaaaaaagtaccccctaaatttgggcccaatatgaaaaattgaccagg
agttagcttttgggaccgaccatttcttaaactaggatagttgaggattc
caaaaatgtatagtttatcctgtagaatcttgggttaagcaaaatgccat
ttttcaggTTTGGCTTCCGGACTATATGGGCAAAATTCCTGGACATTTGa
agaattctgaattttttttgcgagCATTAAATTTCGTGAATTTTCGGAAA
AACTGCGATTATAATCCTTAATCCACTCAAGATAGTTCACTTAGGCCATA
CACACTACACAACATTGCCAAGTGATTGTTCTCATTCAAATTCTATCCAT
TTTTCGGGGTGACATTTTGACGAAGGGATGATGCAAAAGGTATCTGGTAT
AGCGTCACAACATACGTGTCATTGAGAAAGCTTGACACGTTTATCCTTGT
tataaaagttttcgaaaagtTCTAAAGCTTTAGAGTCATCAAAAAGTAGC
AATATTTAAGGAGActtttaaggtggtagtctacccaaaaataaaaaatc
atcgaaaaaattgtcgaattctggtttttgggtgttttgagatccttagg
tctttctgaacatctcctgaaaatttcaaagctatatctttatcattcag
gccgcagtgagcatttttaccctGTTGGGTGCTTGAAAAATCGCCCTAGC
AACAGAAAAAATCCCGTTGCTAAGGACTTATTTCTTCAATCTCGGCAGAA
ACATAGCAATGTGATACGccaaaagaaagctctttttacgcccttttcga
gCGTCAAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNctcggaaaaaaatctggaatgCTTGGTCAATTTTAC
GCAAAATTTTACGAAGATTCcaattcaaaaatcagtttttgtccGTTTGA
CCATGGTTCCATCCgttttttaaaaaagtaagcCCCACTATATTACTCAA
GCTTCTTCAAGCAGGGCGGAAAATTAAGCGTGCAATTACACATGGGTGGA
CTCGGGCGCACTATGATAAGCGCACATTTACAAGTTTACGCCTGCGGAAG
TTAAGCGTGCAATTAGAAGGATTTCTCAGACTGACAGTGTGCTTTTGGTG
GCTCACATAATGTTTTGTAGTGGATTTCAATGTaactgagatatttccaa
gcacaacatgatgtaactgagatagaaatgtgcattataatgaactggac
cTAACTTCTGGAGACACACATTCTCATCTGACACCAGCCATTCATAACCG
CCTAGGCGGTTAACCGCAAGCGAAGGCGCCGCCTTCGATCAAGCCAgctc
attgtcaattcaagtctatgtgaataaaaatatgcacTAGAAAAGTTTCC
ATGTCTACAGAGAGTCATGCTGGAATTTCAATGAACATTTTGTCACACTT
ACTTATGTGGATGGCTGTTTTCACcacccaaatttgatgttatcgCAATG
ATTACCGCAAAGTTTGCGTAATTACGTAACTTTAGCgcaacatgtttttg
ttgatttttggataatttatcaatttttgtgaaatgttttactttaactt
ATGAAACCTGACTGGTTTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNattttttgaaaagagctttccagcTTAAAA
TGATAcccatttttgtctttttctttgattttctcaaaaacgcgTTTCCG
GGGGTTCGCAAACACCTTGTCAAAAATATCTTAGGATTGAGATCAGCtac
agacttgaaattttcagtgaAGTTTCCTTACATGATTGTGCATTGAATGA
Atggattaaaaagttttaaaattggtttcctgatttttaatctcaaaaaa
gcgttttaattttttttttcactcattctagaccttttctaaatattagt
NTCGCTCATTCCACAGCCCTCATAGATGTGCAAATACCCTGAAAAAATCA
GACCAATCGGACAACTAGATCCTGAGATTTTTCCGCCACAGTGATTGGGA
ACCACCGCATTTGCGTTTTGAGAAATCGtgcttttaaaacataaattgcg
gttaaatgaaaagattatagttttcaatagggattttttatgatttgagc
CTTATAAGGGAGTTTTCTACATTATTTCAAAGGAAATAAGGATTTAAAAC
TatttacagtgaaaattttggccaatttgagTGACATTTTGATCATTTCG
AGAAAAccgcaaaactttgaaaaaagaccGCAAAACTCATTTTCACCACG
AAAANcattacgaaatgtaaagaagttcttgagttattgcaaaaaatgtg
attttttgacttttgaaatctggcggtagactaccaccttaaggTGGCCA
TCCactggaaattgaaaaatcgacctTTGAACTTTAAATGTTGATTACTC
AATAACTAAAAATGATATGGGCTTGAAACTTCCAGGTATTATTATTTATG
ACCTAAagttaatattgaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTTACAtggcactttcactttcactttcatgcCA
TCGCTGAAAGCATAATGAAACCGCCAAAATCTAATCCCACACAGttgaaa
aagtaatttgaaGATGATTATGTTGTTTTCTTAGAGATTCCTggcaaaaa
aacattaaaatagcacccaaaaaagaataaacaagcaaacaaaagttCAA
CATACCTTTTTGGGGCGCACTACACAACAACCGACCGTGCtcttaatcaa
aagaaatcacaaGTTACATCATGATTAAATATTCCTTAGAGTTTTACAAA
CCTCCTTGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGACTTCAA
ACCTTCTAGAAATGTTTCTAGCGACTTGAAGACGACCCGTAAAGATTTTC
AAGCCGTTTGAGCAGCTAGAGAAGGTAGAATTGCTGTTTCACTAACGGGC
GGGAAACACAGGGCGTCCATGGGCGAGCATTAAAAGCTTAGAGGTAGGTA
ttttaaaacctaaaattttctgcttattctttacttttatgaattgaaat
tttcagaggttGTTCCAGAGAAGTTATACTTGactttaagccaaaaaaat
aaaaaaccaccAAAAAAGTATCACTATTTTCAAACTCAGTGGATGGCCAC
CTTAAGGCCAGTGGCTTTTTAATTTGTTTCCCATTGGGCCTTCAGATtag
atacaggggtgtataaagTGTTGACATAATTCTTTACCAAATAGAATTTT
AAAAAGTACGTATGGTTTTGTGAAAATGATGTCATTAAATAAACATACGT
GTCATTGGAGATTAGGTTacagattaatttttttattcatttaaaaAGCC
AGtagtatttttattataagcaatCTTATAAGTTTCCTTTAAGATGTAAC
TTGAGGAGAAAATTAATATAATAGAATTAAATCTCGAAACCAATAAATTT
AGCTCTTCGTTTTTTAAGAATTCGAAAGatatgcttacaaaaaaaagtta
acttACCCTAACAATCTGACGCAAGATTTGCTATTATTTCAATAACTAAT
TATTCTTATCATACGTAGCTAGAGCAAAGGACGATTACGTATGCAAATGT
AAATGCATGTCTACGTAGCTTAAGCATAATATAAATAGGATCTTAAGATC
GTACAGAAAACATGACcagatttttaaaagaagacAACAGACATCGGAAC
AAAAATTCAAGTAAAACTGGTGGAAAATAGAAGTATCAAAAATAggataa
attttgaaagtaaaaataaatttgaattgattttcACTTAGAAGATATCA
CTAacagctgtgaaagagtattcTAATAGCAGTATTAACGAAGTCTATGT
CCATGAGAAAGATGAAGTTTGTATGTTTGTTGTTAGCAACGGCCACCATT
TTGGCCTGTTGTCAAGGTAAAGAAGAGGATGTAGGGCCAGTAATTGGTAT
CGACCTGGGAACTACTTATTCATGGTAAGAATCATTGCAAAATTAACAAC
AACTACTtgggggggggttcatggttggcggaggagcggaatcggccctt
ttttcggacggagtggcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttcggtgacgga
attttggttcaatttaagacggtgtgacggaaattggagaaaaaattggc
ggaattacggaatcgggtaccccctgaaacccccccctacttgaacataa
aatattttcttgttatcattacatccctgtctcagtgacatGGTGAGAAC
TCTTGAGACAGTGAAATCGTGAAAATATAAACTTTAATTCCGCGACGAGT
ATAGAAATCGCGTTTTTAATTTAGGATGAAATTGCAGGTTGTTTTTCTAG
CTAGGGATGATATTGTTCGATTTGATTATTCAAATGGATAGAGGGTTCCT
CTCAGTCTATGACATGGATGTGTATTACATTTAAGGCAACCTGGGCAACT
GACTGGTCTTTTCGTCCAATACCGGTCGCTGTTAAGCTCTTAACTTTTAC
AGTACTTTCTTCTACATCATGCGTAAAACATATACATAAAACTACCATTG
acaaatagttctttttataacgaattttgtatttttagtgTCGGAATCTT
TAAAAACGGACGTGTTGAAATTATTCCAAATGACCAAGGTAACCGCATTA
CTCCATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATTGATCGGTGAC
GCTGCCAAGAATCAGTTGACATCCAACCCTGAAAACACTGTCTTTGATGC
CAAACGTTTGATTGGTCGAGAATGGAGTGACCAGAATGTTCAGAAAGATC
GGAAACTATATCCTTTCAAAGTAGTTGAGAGCACCGGTAAACCAAGTTTG
AAAGTTCATGTCAAAAATGGTGAAGAAAAGAATTTTACCCCTGAAGAAAT
CAGCGCCATGATTCTTGGGAAAATGAAGGTAAAGATTCCACTGCAAGCTT
TGAATTAAATCGTTCCACGTACATCCCCTTGCTTATTCTCTTTTTAACAA
AACTTGTAGGTATATTTGTAGTCAACAAAAGTCTCgattaaagaatattt
tttattctgTAAACACCACTCAAAATCTACAGACAAAAAGTGTAGCATAA
AATCTATGTCATTCCTTTCCTCTACTACTAGGATATTGCGGAGGCATACA
CAGGACAAAACATTAGTAACGCTGTAGTCACCGTCCCTGCTTACTTTAAT
AATGCACAAAGACAAGCTACCAAAGATGCTGGCAAAATCTCTGGTTTAAA
CATTATGAGAATAATCAACGAACCAACTGCTGCTGCTATCGCTTACGGTT
TGGACAAGAAAGACGGAGAAAAGAACATCCTGGTTTTCGACTTAGGAGGT
GGTACCTTTGATGTATCTTTGTTGGCTTTGGATGGAGGTGTTTTTGAAGT
CATGGCAACAAGTGGGAATAACCATTTAGGTGGAGAAGACTTTGATCAAC
GAATCATGGAATATTTCATCAAGGTTTATAAAAAGAAGACTGGAAAGGAT
ATAAGACGAGACAATAAAGCAATGCAGAAATTACGACGTGAAGTTGAAAA
AGCTAAACGCACTTTGAGTACACAACACCAAGTGAATATCGAGATTGATT
CGTTTTTTAATGGCGAAGACTTCTCCGAAACTTTAACCAGAGCTAAATTC
GAAGAATTGAACATGGATCTTTTCAAATCAACTCTCAAACCAGTTAAACA
AGTCTTAAATGACTCTGGTCTCAAGAAATCTCAAATCGATGAAGTCGTCC
TCGTTGGTGGTTCTACACGCATTCCAAAGATTCAAAGTTTAGTCAAAGAA
TTCTTCGGAGGAAAAGAACCAAGTAAAGgtaaagaacttttttaaacgga
agatttgaatttgaaaaacacccctgtctcaaagccccggtggaactttt
ttcctcagcgGGGATAAatattctattgttcaaagcaTCGatgttcaaag
gttaaaaaatcgaGTGGGGATAGTTTtagaatgcaatttttaaacatgga
attttgatTGGAGACGAGATGTCaatcccagtggggctgaaattacaAGG
CTTTTCCCActagggacgaaatttttgccaaattctcCAGTGGGACtcgg
gtcccagtgggtctgtgatacaggggtgccAAAAAAAAGTTCAGCCCTAA
CCACAATGGTTCGattcaaaacttcaaaacttcGATTTTGATATTCATTT
AAGGGTAAAAAAATATGaccaaaagttttcatttttagggaTCAACCCCG
ACGAAGCAGTGGCATATGGTGCAGCCATTCAAGGCGGTATATTAAGTGGT
GAGGAAAAGCTAGATATTGCTGTGATCGATATCAACCCACTCACATTGGG
AATCGAGACTGTTGGTGGAGTGATGACGAAATTGATCGATCGAAATACTG
TAGTTCCTACTAAAAAGTCACAAGTTTTCTCAACGTCGGCAGATAGACAA
CCGACTGTCACCATCAAAGTCTTCGAAGGAGAACGTCCAATGACCAAGGA
TAACCATCTTTTGGGAAAATTCGATTTGAACGGAATCCCACCAGCACCAA
GAGGTGTTCCACAAATTGAAGTCACCTTCGAAATCGACGTCAACGGTATC
TTGAGAGTCGGTGCTGAAGACAAAGGAACCGGCAAGAAAGAAAAGATCAC
CATTACCAACGATCAAAACAGATTGTCTCCTGAAGATATCGAACGTATGG
TCAACGAAGCTGAACAATTTGCTGACGAAGACAAGAAAGTCAAAGAAAAG
GTCGAAGCTAAGAACGAATTTGAAAGCTATGCTTACTCATTGAAAAACCA
AATTGGAGATAAGGACAAATTAGGTAGCAAATTGAGCGAAGAAGACAAAG
CTGCTTTAGAAAAAGCTACCGACGAAGCTGTCTCATGGTTGGAAAGCCAT
GCTGATGCTTCAACTGAAGAActtaaagaagaaaagaagaaattggAGGA
TGTAGCCACTCCAATTGTTAGTAAAATCTACCAACAACAAGGTGGACAAC
CAGGAGGAGAGGGTGAGGCTCCAAACCCAGGATCTGAAGAGAAAGAAGAC
AAAGATGAACTTTAGATCTTTTTATATAGCTAGgtttataaaatttttac
aaaattctttagTTTAATCTGCGGATATTTCTTGGATGGATTTTGCNctt
agagagactgaattttggtgaaaaggtgacccttagagagactcagtgta
gaaaaacccaacccttagagagactttttcacaaaaaatttctataacgg
gc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037069	XLOC_037069	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058839-exon-scaffold_314-1491911889:441250..441633	TCONS_00058839-exon-scaffold_314-1491911889:441250..441633	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1510915933:441250..441633	TCONS_00058839-exon-scaffold_314-1510915933:441250..441633	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1575043694:441250..441633	TCONS_00058839-exon-scaffold_314-1575043694:441250..441633	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1491911889:442248..442587	TCONS_00058839-exon-scaffold_314-1491911889:442248..442587	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1510915933:442248..442587	TCONS_00058839-exon-scaffold_314-1510915933:442248..442587	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1575043694:442248..442587	TCONS_00058839-exon-scaffold_314-1575043694:442248..442587	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1491911889:442761..443457	TCONS_00058839-exon-scaffold_314-1491911889:442761..443457	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1510915933:442761..443457	TCONS_00058839-exon-scaffold_314-1510915933:442761..443457	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1575043694:442761..443457	TCONS_00058839-exon-scaffold_314-1575043694:442761..443457	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1491911889:455488..456501	TCONS_00058839-exon-scaffold_314-1491911889:455488..456501	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1510915933:455488..456501	TCONS_00058839-exon-scaffold_314-1510915933:455488..456501	Clytia hemisphaerica	exon
TCONS_00058839-exon-scaffold_314-1575043694:455488..456501	TCONS_00058839-exon-scaffold_314-1575043694:455488..456501	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_314	supercontig	scaffold_314:441250..456501 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
440.555	426.558	203.101	170.536	20.9071	18.6042	67.468	73.4406	49.3518	53.3664	57.836	52.051	65.4917	53.1111	49.6954	53.8989	65.3227	68.1836	26.3184	36.3396	73.0861	66.1042	258.527	235.535	30.7552	59.4677	224.866	200.243	220.089	189.016

Blast

[Close]

BLAST of TCONS_00058839 vs. Swiss-Prot (Human)
Match: GRP78 (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 933.71 bits (2412), Expect = 0.000e+0
Identity = 493/609 (80.95%), Postives = 558/609 (91.63%), Query Frame = 2

Query:  341 IGTVVGIDLGTTYSCVGVFKNGRVEIIPNDQGNRITPSYVAFTSEGERLIGDAAKNQLTSNPENTVFDAKRLIGREWSEKSVQSDIKYFPFKVVQKGGKPHITVDVKEGEAKTFAAEEISAMVLNKMKDIAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVSTSGDTHLGGEDFDQRVMEYFVXXXXXXXXXXXXXXNRALQKLRREVEKTKRALSTAHQARVEVESLFDGEDFSETLTRAKFEELNMDLFKSTLKPVKQVLDDSGLKKSEIDEIVLVGGSTRIPKVQSLVKDFFGGKEPSRGINPDEAVAYGAAIQGGILSGEEKL-DIAVIDINPLTLGIETVGGVMTKLIDRNTVVPTKKSQVFSTSADRQPTVTIKVFEGERPMTKDNHLLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILRVGAEDXXXXXXXXXXXXNDQNRLSPEDIERMVNEAEQXXXXXXXXXXXXXXXXXXXSYAYSLKNQIGDKDKLGSKLSEEDKAALEKATDEAVSWLESHADASTXXXXXXXXXXXDVATPIVSKIY 2164
            +GTVVGIDLGTTYSCVGVFKNGRVEII NDQGNRITPSYVAFT EGERLIGDAAKNQLTSNPENTVFDAKRLIGR W++ SVQ DIK+ PFKVV+K  KP+I VD+  G+ KTFA EEISAMVL KMK+ AEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTI+GLNVMRIINEPTAAAIAYGLDK+EGEKNILVFDLGGGTFDVSLLTIDNGVFEVV+T+GDTHLGGEDFDQRVME+F+K+YKKK GKD+RKDNRA+QKLRREVEK KRALS+ HQAR+E+ES ++GEDFSETLTRAKFEELNMDLF+ST+KPV++VL+DS LKKS+IDEIVLVGGSTRIPK+Q LVK+FF GKEPSRGINPDEAVAYGAA+Q G+LSG++   D+ ++D+ PLTLGIETVGGVMTKLI RNTVVPTKKSQ+FST++D QPTVTIKV+EGERP+TKDNHLLG FDL GIPPAPRGVPQIEVTFEIDVNGILRV AEDKGTG K KITITNDQNRL+PE+IERMVN+AE+FA+EDKK+KE+++ +NE ESYAYSLKNQIGDK+KLG KLS EDK  +EKA +E + WLESH DA  E+ K +KK+LE++  PI+SK+Y
Sbjct:   27 VGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635

The following BLAST results are available for this feature:

BLAST of TCONS_00058839 vs. Swiss-Prot (Human)

BLAST of TCONS_00058839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRP78	0.000e+0	80.95	78 kDa glucose-regulated protein OS=Homo sapiens G...	[more]

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TCONS_00058839 (transcript) - C. hemisphaerica