TCONS_00058882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058882
Unique NameTCONS_00058882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058882 ID=TCONS_00058882|Name=TCONS_00058882|organism=Clytia hemisphaerica|type=transcript|length=1047bp
AAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACTGGAT
GATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGCAATT
TGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCGTTGA
AGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTTGGTG
ATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATCGAAA
CAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACTAAAG
TAAAACTGACAGCAGCCAGAAACAAAACAGCCAATATCGGTGAGAAATGT
CATTCTACTGGCAACATTACAAAATGTGGAAAAAATGCATATTGTAGGAA
GTCGAATATTGGCAAATATTTCTGTGATTGTTTGACAGGATATATGAGTG
ATGGATCAGCTGATTGCCAAGATGTTCATTTTTCGATCGACTTCAAGGAA
CCAACTACCAATCATCTACCAGAATTACGACGACTTCATTTCTTACAAAG
TGACGCTTTATCGATATGTTTCTGGTTCAAATTAAACAATGCTTCTCATT
CGAGGTGGATGTCAGCTTTCCTATACACCTCTGTTGAAATTGAGGGTGAT
AATGATCTCTCTATTTGGGTCACCAAAGACCAGGCTCATGTTTATTTGAA
AAGCTCTGGCAAGAGAATTGCCCAAACAACTTTCCAAGAGAATGAATGGT
CTCATTTATGTTGGATATGGGAAAATTCAGGTCGTTGGTTGACCTATGTG
AATGGAGATTTAAAGAAAGCTGGTTTCGAAGCCAATGATAAATTTCAATC
CTCTTTTCCGGATAGTTTAGGAAACCTTGTACTTGGCCAAGACAAAGATG
AAGATACGATCAACCAAGACGCTCAAATGTTGCATGGTTCTATATCACAA
TTCATGATTTATAACAGTATGCTAACCAGAGATGACGTGGTGGCAGTTTA
TCAGAATCGGGCGCCCATTGACAACATTGTGGTTGGTTGGTGGCAGT
Run BLAST on NCBI

transcript from alignment at scaffold_314:318212..322322-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058882 ID=TCONS_00058882|Name=TCONS_00058882|organism=Clytia hemisphaerica|type=transcript|length=4111bp|location=Sequence derived from alignment at scaffold_314:318212..322322- (Clytia hemisphaerica)
AAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACTGGAT
GATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGCAATT
TGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCGTTGA
AGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTTGGTG
ATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATCGAAA
CAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACTAAAG
GTGAGGAGGTTGTCCAGTTGACTTATCAGTACTTACAAAGAGCTAGCTAG
TTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGTCACGACGACA
CGACAATGCCATGACTCAATAACTTCAAATTTTCAAACATTTTTTTATAT
AAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAAAACAGTGGCG
GGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCACCGTACCATAC
ACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACCATATACTCCA
CTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGCAGCCAGAAAC
AAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCAACATTACAAA
ATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGCAAATATTTCT
GTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGATTGCCAAGGT
AATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTACTGTATAAGGA
GGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAATATTTTGATAT
TATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCAGTATTTGATA
AATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAAAATCCTAAAC
AATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGAGCTCTTTTTG
CTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTTTGCTTGTAAC
TTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCGGCAGGTACAA
AATGCATAAAACATAATGCATATTGCATAATGCATAATAGTACTGTGTAA
TTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGTAGAGGCTAAA
ACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAGAGGGATTTCC
CCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAAACATTCGA
ATCATAACAACAGAAAGGGTTTTCCCTCAGCANAGTACTTACAAAGAGCT
AGCTAGTTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGTCACG
ACGACATGACAATGCCATGACTCAATAACTTCAAATTTTCAAACATTTTT
TTATATAAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAAAACA
GTGGCGGGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCACCGTA
CCATACACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACCATAT
ACTCCACTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGCAGCC
AGAAACAAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCAACAT
TACAAAATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGCAAAT
ATTTCTGTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGATTGC
CAAGGTAATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTACTGTA
TAAGGAGGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAATATTT
TGATATTATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCAGTAT
TTGATAAATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAAAATC
CTAAACAATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGAGCTC
TTTTTGCTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTTTGCT
TGTAACTTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCGGCAG
GTACAAAATGCATAAAACATAATGCATATTGCATAATGCATAATAGTACT
GTGTAATTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGTAGAG
GCTAAAACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAGAGGG
ATTTCCCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAAAC
ATTCGAATCATAACAACAGAAAGGGTTTTCCCTCAGCATATTATAAGTAA
TAAGAAAATGCAAACAGATCAGAAAGATTTCCCCCATCTTTCTTTCTCAA
AAAGGTATAAATACACAAACATTCGAATGTAAAAAGATTGGAAGTCTATT
TTCTTTGATCTAGTTTTCGCATGAAGCTGAGCTCTTTAACTTATACATAT
TTTGTATATTGGCTGGATATTGGCTTATCTAACAAAAAGCATTCACATGG
TTAATGCTTTGTAAGAGGGAAAACCCGTCGAAATTTATTAGCAATATTGT
TTGTTCGAAAAGATCTCTGACCTGAGAAAACCCAGAATAAAGATCTTGCT
ATAAAATTTACGTTTTCGAGTTAGAAAAGTAATATACGGAGGAGATATTT
TCGTCTTTTTTCTACACTATACTACGTTCTGTAAAATACAACTATGAAAA
CCAAAATGGCGACAAGCATTTTCAGTGGATCATGGATTTTCTTCATCATC
CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATG
CATTTTGAACCTGCCGCCATAAGAACATCCAAAATTTTTGAAGCCTTAGG
ATGGACTTTTGGAGTTAACTCAGCCTTAAAATGTTCTTATTTTTGATACT
TTTTGAGTATTTTTATCCATTTTCCTAAGAAATTGGGTGTTTTAAAGTCA
GCAAAGCCTTAGAATTTTCTTAACTTGTTCTTGATATTTTAGCAATCGAA
ACCTTAGGTTTTTATGTAATTTGTTCTTATAAAAAAACGTGTACCTCAAT
CGCTTCGCAACTCTTTACACATACACAAGTCATCTTGTAAGATAGTAAAT
ACGAAAAGTTAGTAAATTCACTTTTTTCGTTTCAGATGTTCATTTTTCGA
TCGACTTCAAGGAACCAACTACCAATCATCTACCAGAATTACGACGACTT
CATTTCTTACAAAGTGACGCTTTATCGATATGTTTCTGGTTCAAATTAAA
CAATGCTTCTCATTCGAGGTGGATGTCAGCTTTCCTATACACCTCTGTTG
AAATTGAGGGTGATAATGATCTCTCTATTTGGGTCACCAAAGACCAGGCT
CATGTTTATTTGAAAAGCTCTGGCAAGAGAATTGCCCAAACAACTTTCCA
AGAGAATGAATGGTCTCATTTATGTTGGATATGGGAAAATTCAGGTCGTT
GGTTGACCTATGTGAATGGAGATTTAAAGAAAGCTGGTTTCGAAGCCAAT
GATAAATTTCAATCCTCTTTTCCGGATAGTTTAGGAAACCTTGTACTTGG
CCAAGACAAAGATGAAGATACGATCAACCAAGACGCTCAAATGTTGCATG
GTTCTATATCACAATTCATGATTTATAACAGTATGCTAACCAGAGATGAC
GTGGTGGCAGTTTATCAGAATCGGGCGCCCATTGACAACATTGTGGTTGG
TTGGTGGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037089XLOC_037089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058882-exon-scaffold_314-1575043694:322023..322322TCONS_00058882-exon-scaffold_314-1575043694:322023..322322Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1575043694:321631..321695TCONS_00058882-exon-scaffold_314-1575043694:321631..321695Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1575043694:320469..320574TCONS_00058882-exon-scaffold_314-1575043694:320469..320574Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1575043694:318212..318787TCONS_00058882-exon-scaffold_314-1575043694:318212..318787Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1510915933:322023..322322TCONS_00058882-exon-scaffold_314-1510915933:322023..322322Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1510915933:321631..321695TCONS_00058882-exon-scaffold_314-1510915933:321631..321695Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1510915933:320469..320574TCONS_00058882-exon-scaffold_314-1510915933:320469..320574Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1510915933:318212..318787TCONS_00058882-exon-scaffold_314-1510915933:318212..318787Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1491911889:322023..322322TCONS_00058882-exon-scaffold_314-1491911889:322023..322322Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1491911889:321631..321695TCONS_00058882-exon-scaffold_314-1491911889:321631..321695Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1491911889:320469..320574TCONS_00058882-exon-scaffold_314-1491911889:320469..320574Clytia hemisphaericaexon
TCONS_00058882-exon-scaffold_314-1491911889:318212..318787TCONS_00058882-exon-scaffold_314-1491911889:318212..318787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:318212..322322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.356867	0.461606	0.0828105	0.284898	0.0516689	0	0.422842	1.12407	0	0	0.0340066	0.0851861	6.95007	3.074	0	0	3.61905	4.56907	11.8487	11.1085	2.4433	5.49911	4.25826	6.45575	6.74664	8.85142	23.0512	29.1559	6.39772	7.00229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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