TCONS_00058961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058961
Unique NameTCONS_00058961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058961 ID=TCONS_00058961|Name=TCONS_00058961|organism=Clytia hemisphaerica|type=transcript|length=1580bp
CTGAAAACAGCagtTTGGAGAAAAGAATTCATGATGTCTTACATAAAGCA
TTCTGGGATGTATTAGAAGAAGAAGTTAAAAGCGAACCGCCTGAATTTAA
AAATGCATTCAATCTTTTAATGGAAATGAAAATGCTTATTTTGGAAATAA
TTCCGAAAAGTAAGGCTGCAAGTGCAATGCGTACAGAGATAGAAGAAACC
CTTGACGAGGAACTTATAAAACAACAGATTGATCACAATGCATTTGATAT
TGTATCTTGTGCCTCATTCATACTTTCCACACTTTCGAAAATTTGTGCTC
CAGTTCGGGATGCAAGAATTAAAGCACTTAAAGCAAAGACAGACCTTGTA
CCTCTACTAAGagGGACATTTGAATTAATCAACCTGATGAAAATCGACAT
CGCGAATTATGAAATCAAATCTATAAAACCCATCCTTATGAAACAAGCAG
TAAAATATGAAGACGAAAAGTTCAATGAATTCCTAAAAGAAAACAAAGat
ggtttaaatttgacaaaaatttggctgaaaaatgcATTGGATATTATTAA
CTCAATCAGGAGTCCATCTTCCCAAAACAAAGTTACCCCAGGGGTTGTCA
TAACAAACGCTTACTTGTCATTGTTATTTCCAACCTCTGAACTCTGCCCT
GAGACTTTATTTATGGATGAACTTCGTTTGAAACAAATTTCTGGACAGTT
TGAAGTCTTGATCAATACAGTGTCTTCGTTGACgtattgtttacattttt
tgccgCCACACCTCTCCACTGATGAAGACTTCATTATTCATTTAAAGAAG
ACTATTTTTATACTCATTCAAGGATCTAAATgGGATGAAACTTTGGTTGA
AAGTATTTTCTTGCAAATACAGACAGAGACAGAAAAAGAATGTAGCAAGC
GTGAGATTGAATTGAAGACGCCAGCCCAGTGGGATATTTTGAGGAACCAA
CTGAAAGGTTTACTAACAAACGACAAACAAGAACCTAATCAACTCAAAAC
TCTCATCAAGTCAAGAATACGGGACTATGTTCtactttcgatgacgtcac
agACGCTTCAAACGCCGATGTTTACAGTTTTAGCGCCCATTCAAAACGAA
CTTAAAGAATTGAGCACTCGTTTCGTCCGAGTTGTCAATCATAACAAACA
AGTGCATTGTGCGAGATATATGGACATTGTTGAGGAACTTCTCGGAATTA
AATCGGACGATGATTCCGATTCAGAATCCGAAaaggaaatcggggaaaat
tCGACTGATAAAACGGAATAACCTGTAAATTGAGCTTTGAAAAGCTCTCT
gcataaattttgaatttttattacaGTTTTTTAgattataaaaatctttt
tttagagAGCCTACTTAGTTAGTAgtgatatattttatttatatcGGAAT
ATTTTATTGTCAAGTATTCGTTGTTGTTTTATATAATGTGTCATGTTTAT
TGTAGTTTTAAtggatttatttttgtgtttttttgtatTGATTGTAAATA
ATACCTTGTAATTCTATTGAAGTATATTTCGAAAGATATACCCCGTAAAA
ATGAACAGCgctataattaccattttcaca
Run BLAST on NCBI

transcript from alignment at scaffold_315:215793..221932+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058961 ID=TCONS_00058961|Name=TCONS_00058961|organism=Clytia hemisphaerica|type=transcript|length=6140bp|location=Sequence derived from alignment at scaffold_315:215793..221932+ (Clytia hemisphaerica)
CTGAAAACAGCaggtttattttatattttcttcttaattttcctttgaag aAATGAGACAAAATGTTTAGAGAATATGCTGTTTGGCTGTACTtcttaaa attgttaaaaatagcactttgtattggagatttttcatttttattccagA TAAAAAACTTTCACGCTATTCAGTTTTAAATGTTAAGTCACACTAGACTA CACTCATCATGCTGCAAACAACGACTTGTTACCAATCTTTACTGATCATT TCATAGTTTCTACTGGTCCATCTGAAGCTTTTACTGTTTCTATTCTGTCC GGTTAAAAGTCttataccgtgagaggtcctaaatccgacaccactgccta aatccgatggggtctttcaaagatacaaactaaaataaaaacaaaccttt tgctgtgacgcaacgaagataccaaagtgtcaacaaaactgagagatttg atacactgaaccaattgaaccaaataacaataatttttcaaagaggccac cctgttgaataattatgtagtccagcagaaaaacaatgataaaaccatgt ataattattacaatatgcatgatgcagttattatgcatggctctatcata gTTTTTAtgactggactacataattattcaacaggacgtcctctttgaaa aaaggtctatttgcttcttataacaaaacaaatatttttttattgcaata tgcacaacgtcataaatggcaacagtagtaacagcatcataaaaagtaat gagatgttttgattttccaaagcagacaaaaatataaaagaggtctgtgt acgagtgtgctcattttgaaacgttacgtaatcaagcctggtttttatta ctttacactggcacttggcttgattgcNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgacat cttgacattacagctatcttgttagatgttttgtttcgagagttctagca atagtttatcgttcaacttggagagggaatgtttgtaaacattgaattct ttttcataacagttatttggggggtcggaattaggcaggggtgtcagatt taggacctctcGCGGTATTTTGAAGCAGAATCTAAAATCTTAGCCCGGTT TCTCAGATTTCTCAAAATCAGAAAtcaggaaattttaaaataggggaaac tttttttccaaaaatcagaaaaacgggggagtttttctcaaaaatcgaaa atgcgtggagaaatcaaacttttcaaaaattaggtgaGGCAATGTGGAAA TGCGTGAGTCTCATGCCCTATGCGTAAGAGTTGGCACCTTTGAAGAttaa aagttacgaaaaaaACCTAtatataccgtaagttggtctaatgtcgacat ccgtcttctaatttcgacacccttctttagagataggaacaatagaaact gaggaagctcggaatcgctgattgactttgattagcgcaatgagaggaaa aaatctttagtctatcagtgatttcgaccaTCTTATTATTCcaatctata aagaaggatgtcaaaattagaagacggatgtcgacattagaccaacttac ggtataggtttttttcgtaacttttaaTCTTCAAATTACCAATATAATAC TACTTTGAATATTATCTTAAGAtaaattcattttgaaaaatataaatgcC AATCAAAGGGTCATTTCAGACTcaagaattttttcatttccCTTCTCAAA TTATTCTTACTACGCTCAAAAAATTACTGTCCAACTGAAATTCCTTATTG ACAGCACTGGACTAGCTTCCTGTAAAAAATGCACACAAAATATTAAATGC TGTGAAAGCACTTAATCATTTACTTGACTCATATGGAAAGAATATGCCAC AAAATCTCTAAAGCAAAGAGACTTGTGAAAAATAACTCAGcgttttttag tgaaatttacatttaatcaaaataaattGACCTCTACGCCTCCATTTGAA AAGTTAATTTACAGACAACTTTgcaagaaaaatatcaacaggGGAGAAGA CACTCACCTAGATAATTGCACCACACCAACTTACATCCTTTTTGTTGGAA CGCATCATTTAGACCATGTACAGACGTTActctttcaaattgtttcaGTA TGCTCtccgttacggatcgagagtgATGTTTCAGAACATTTCGAAGTTAT AAAAAGGAGCAGttcagtttcaaagaaaatagtggAGCAAAACTGTTTta atctgttttgctttgttatGTCTGGGTGAACTTTTATTCCGAACCTCAGA GTAGTTTGACTAACTGACACTACCCAAAAAATCATATGAAAAAAGAATTG CAGGGGCTTCTTCTCTAGAACTTGCTGTCTTTAAGGTACTTCCAGCTCTc ttcctggaaaaatataatatctaatcttttttttttttaatcttaaggtt attttgaaaaagtaactcaatttctttattttctagtTTGGAGAAAAGAA TTCATGATGTCTTACATAAAGCATTCTGGGATGTATTAGAAGAAGAAGTT AAAAGCGAACCGCCTGAATTTAAAAATGCATTCAATCTTTTAATGGAAAT GAAAATGGTAAGTTAttcttaaaattaaattttaattttatttgtgACTC ACTAGGAGTTGAGCTATTTTTCACTTCTAGATTTCTATGTTAAAATTTGG AACTTGCAAGGAAAAGTTATAGCCAAAATATCTATATTATTAGAACTAAT CTTATATTATGCTAGGtaaaaaatcagtgtttttcagaaaaaaccTGTTT AAAGGTGTGGTCTGATCAGattcttttgaaaagatttaTTATTGAAAACT GTatagtataattttaaattcctGAACTTTTTTAGGCTTTATTTCTGTTA TCGATAAGCAAATTAtcagtataatttttttttagaaattactTCTGAAA TTGTCTAGcttgttttaaattctttttattatttcatcAGCTTATTTTGG AAATAATTCCGAAAAGTAAGGCTGCAAGTGCAATGCGTACAGAGATAGAA GAAACCCTTGACGAGGAACTTATAAAACAACAGATTGATCACAATGCATT TGATATTGTATCTTGTGCCTCATTCATACTTTCCACACTTTCGAAAATTT GTGCTCCAGTTCGGGATGCAAGAATTAAAGCACTTAAAGCAAAGACAGAC CTTGTACCTCTACTAAGGTAGGCagttatataatatttttttaattcatt atcaaatattttaaattgtttgaagaattgaaaatttttgctcaaaatgt tTGTCACTCCTTTTCCTTTTCCTCTGAttcatttaactttttttagagGG ACATTTGAATTAATCAACCTGATGAAAATCGACATCGCGAATTATGAAAT CAAATCTATAAAACCCATCCTTATGAAACAAGCAGTAAAATATGAAGACG AAAAGTTCAATGAATTCCTAAAAGAAAACAAAGGTTAGTTAGATGAGATT TCTTTTATGGAGGGTAttcagcatcaaaataattttctgttttCATTTAC TCGCCTTCTAGAGTTCTTATTGctaaattgtttttactttttttcttttt agatggtttaaatttgacaaaaatttggctgaaaaatgcATTGGATATTA TTAACTCAATCAGGAGTCCATCTTCCCAAAACAAAGTTACCCCAGGGGTT GTCATAACAAACGCTTACTTGTCATTGTTATTTCCAACCTCTGAACTCTG CCCTGAGGTTAGTTTCATGAATATATCTTTCTATTTTTTGCTATAATCaa tttaaataataaattgattaaaaatataatcaattaaaaaaattcagacg TTATTGTCTaaagtttgtttatatttaaaaaaattgtttatgacATGAAG TTAATGAAtgctttaaatttttattttcgattCAGACTTTATTTATGGAT GAACTTCGTTTGAAACAAATTTCTGGACAGTTTGAAGTCTTGATCAATAC AGTGTCTTCGTTGACgtattgtttacattttttgccgCCACACCTCTCCA CTGATGAAGACTTCATTATTCATTTAAAGAAGACTATTTTTATACTCATT CAAGGATCTAAATggtaaatatacaaaatattcATTATTGAATGttacat tcaaaatattttgaatccTTTCTATAGAAATAGTAATGAATAGGCTAAAA TATTCATTCTCCCAATATTGAGAGGTCAAACATTGAAATTCAAAGTGATT CCATGTAATTAAGCTCCCGTTATATAGTTATAATGACCACGTAAGTACAA TTAAGATAGCCAGGATATACCTGTCGGAAATTAACTCGTGTTTTCAATGT CGTTGATACCTTTTTGATTGTCCCGACATTTCCTGTACATCTATGAAAAA AGCAATCATTAATTCGATAGTTAACTATTGAAAAATCTAGCAAAGGTTTG ATACCTGTTTGTAAACaataaatcttttgttttgaaataaataaaaatga gctAATGAGTCTCGGTAACTTCCGTCAAGCTCCGTAACATTTTCTTCGTG GATTCATAAGGTTTTTGGATAGGAATTAGGATTGAAAGTAATAACTAGTC TGTACATCCAGTTTGAGTTAATTTTAATGTTACAATCATATCGTTTTTTT TCTTAGGGATGAAACTTTGGTTGAAAGTATTTTCTTGCAAATACAGACAG AGACAGAAAAAGAATGTAGCAAGCGTGAGATTGAATTGAAGACGCCAGCC CAGTGGGATATTTTGAGGAACCAACTGAAAGGTTTACTAACAAACGACAA ACAAGAACCTAATCAACTCAAAACTCTCATCAGTAAGTTCCAAATAAGCT ATATTGATTGctcattttgattttcttgcgGAATTGATAtaattcatttt tgttttcatattttttattttaatccaAGACGTtatttaaaaatagaaag attTCGATAAACTTTATCGTGACTAATAATACCCCTCGAAGTTAAACGAA ACaatcattttttaaagatatttactGTTAATCAAATAAAGTCATAAGAT GTCCTCCTTTACTTTTAGAGTCAAGAATACGGGACTATGTTCtactttcg atgacgtcacagACGCTTCAAACGCCGATGTTTACAGTTTTAGCGCCCAT TCAAAACGAACTTAAAGAATTGAGCACTCGTTTCGTCCGAGTTGTCAATC ATAACAAACAAGTGCATTGTGCGAGATATATGGACATTGTTGAGGAACTT CTCGGAATTAAATCGGACGATGATTCCGATTCAGAATCCGAAaaggaaat cggggaaaattCGACTGATAAAACGGAATAACCTGTAAATTGAGCTTTGA AAAGCTCTCTgcataaattttgaatttttattacaGTTTTTTAgattata aaaatctttttttagagAGCCTACTTAGTTAGTAgtgatatattttattt atatcGGAATATTTTATTGTCAAGTATTCGTTGTTGTTTTATATAATGTG TCATGTTTATTGTAGTTTTAAtggatttatttttgtgtttttttgtatTG ATTGTAAATAATACCTTGTAATTCTATTGAAGTATATTTCGAAAGATATA CCCCGTAAAAATGAACAGCgctataattaccattttcaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037141XLOC_037141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058961-exon-scaffold_315-1491911889:215793..215805TCONS_00058961-exon-scaffold_315-1491911889:215793..215805Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:215793..215805TCONS_00058961-exon-scaffold_315-1510915933:215793..215805Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:215793..215805TCONS_00058961-exon-scaffold_315-1575043694:215793..215805Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:218779..218899TCONS_00058961-exon-scaffold_315-1491911889:218779..218899Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:218779..218899TCONS_00058961-exon-scaffold_315-1510915933:218779..218899Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:218779..218899TCONS_00058961-exon-scaffold_315-1575043694:218779..218899Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:219283..219509TCONS_00058961-exon-scaffold_315-1491911889:219283..219509Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:219283..219509TCONS_00058961-exon-scaffold_315-1510915933:219283..219509Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:219283..219509TCONS_00058961-exon-scaffold_315-1575043694:219283..219509Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:219639..219775TCONS_00058961-exon-scaffold_315-1491911889:219639..219775Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:219639..219775TCONS_00058961-exon-scaffold_315-1510915933:219639..219775Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:219639..219775TCONS_00058961-exon-scaffold_315-1575043694:219639..219775Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:219895..220049TCONS_00058961-exon-scaffold_315-1491911889:219895..220049Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:219895..220049TCONS_00058961-exon-scaffold_315-1510915933:219895..220049Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:219895..220049TCONS_00058961-exon-scaffold_315-1575043694:219895..220049Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:220228..220406TCONS_00058961-exon-scaffold_315-1491911889:220228..220406Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:220228..220406TCONS_00058961-exon-scaffold_315-1510915933:220228..220406Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:220228..220406TCONS_00058961-exon-scaffold_315-1575043694:220228..220406Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:220949..221124TCONS_00058961-exon-scaffold_315-1491911889:220949..221124Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:220949..221124TCONS_00058961-exon-scaffold_315-1510915933:220949..221124Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:220949..221124TCONS_00058961-exon-scaffold_315-1575043694:220949..221124Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1491911889:221361..221932TCONS_00058961-exon-scaffold_315-1491911889:221361..221932Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1510915933:221361..221932TCONS_00058961-exon-scaffold_315-1510915933:221361..221932Clytia hemisphaericaexon
TCONS_00058961-exon-scaffold_315-1575043694:221361..221932TCONS_00058961-exon-scaffold_315-1575043694:221361..221932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:215793..221932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.95825 9.14177 3.62462 2.78284 13.2502 10.2456 6.35199 5.99588 17.6135 21.8113 106.888 78.1213 5.71757 3.12914 5.12957 0 8.70055 3.65107 45.2163 65.9161 28.0906 37.9821 21.5628 26.794 15.7136 14.0846 47.1243 91.3436 33.1861 26.1995
Blast
BLAST of TCONS_00058961 vs. Swiss-Prot (Human)
Match: T11L2 (T-complex protein 11-like protein 2 OS=Homo sapiens GN=TCP11L2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 9.947e-53
Identity = 139/419 (33.17%), Postives = 241/419 (57.52%), Query Frame = 3
Query:   12 SLEKRIHDVLHKAFWDVLEEEVKSEPPEFKNAFNXXXXXXXXXXXXXPKSKAASAMRXXXXXXXXXXXXKQQIDHNAFDIVSCASFILSTLSKICAPVRDARIKALKAKTDLVPLLRGTFELINLMKIDIANYEIKSIKPILMKQAVKYEDEKFNEFLKENKDGLNLTKIWLKNALD-----IINSIRSPSSQN----KVTPGVVITNAYLSLL---FPTSELCPETLFMDELRLKQIS---GQFEVLI-------NTVSSLTYCLHFLPPHLSTDEDFIIHLKKTIFILIQGSKWDETLVESIFLQIQTETEKECSKREIELKTPAQWDILRNQLKGLLTNDKQEPNQLKTLIKSRIRDYV--LLSMTS-QTLQTPMFTVLAPIQNELKELSTRFVRVVNHNKQVHCARYMDIVEELL 1193
            SL  R+  ++H+AFWDVL+ E+ ++PPEF++A  L  E++ ++L  +  +   + +R +I E LD +LI+QQ +H+A DI   A++++ST+ K+CAPVRD  I+ LKA  ++V +LR  F +++LM++D+AN+ I S++P L +Q V+YE  KF E L+E    L+ T  W+K +++     +  S  +P ++N     ++P +V+ N+YL LL   +   EL PETL  D  RL++++    Q +++        N V ++T  L    P L++       L +   +L++G   +   ++ +   I  +T  E +K  +E   P     ++  L G  ++ ++E N + +LI  RI+ Y+  LL + S Q    PM   LA IQ EL+ L +++  +VN NKQV+   Y +I+ +LL
Sbjct:   98 SLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREILLSFL--TPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEVLRQIFHVLDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFSLSESALTPGAENTSKPSLSPTLVLNNSYLKLLQWDYQKKEL-PETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAITGGL----PELAS------RLTRISAVLLEGMNKETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLIDKRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQVYGPFYANILRKLL 503          
The following BLAST results are available for this feature:
BLAST of TCONS_00058961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T11L29.947e-5333.17T-complex protein 11-like protein 2 OS=Homo sapien... [more]
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