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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058708 ID=TCONS_00058708|Name=TCONS_00058708|organism=Clytia hemisphaerica|type=transcript|length=1285bp
CTCAGCACTTCGAGCTCTATCAGATTAGCACAAAAGTTTGTTCATTTGAG
CACTTTGAAAAATCGactagtaaaggggggacccttgattgAGCAAAAGA
CCCTGttttaagtcaaattttagggttttatcacctattcagcctgaaaa
ccatcccaAACCGTAATCTATAGGTACATAGGAAGCTAAAAAACAATGGT
TCACAAAGTCCCGTTCAAGGTgggtttttggccatttttcctGGACTAAA
ATGGAACGTTTGCATATCTGTTTTCAGCTTGAAAGAAATCAAGAGATATT
CGATTGGTTCAGAGATCAATTCTGTAGCTCTGCATCcttcgaaaaattgt
tttgtggCTGGAGGTCAAGACTTTCTCATGTACAAGTATGATTATCACAC
TGGAGCCCAACAAGAAGCTTCACATGCTCATTTTGGACCTGTCCATTGCG
TTCGATTTTCACCAGATGGTGAAGTGTACGCCTCTGGATCAGAAGATGGA
ACATTACGGTTATGGCAAACAACTGTCGGCAAAACATACGGACTATGGAA
AGCTAACAGTGATGAAGAGGAACAAAAGAATGAAGTCAATAAAACGAATC
ATTGTAACGAAATTTCTGTTGAAGGTTAAACGTGTATTGTCTGggtaatg
ttaatgttaatatCCCTTGAATTAgcatgtgacgtcataactttTTGGTC
GTTAATCAGAATAATAATTAATAGATCGTTGTCTGGTTTGTTTCCTGTAT
GTATAAtgtgtttgtttttaaaacgaaAAGTTATGAATTCACTGATGATA
ATGTTGTTTCGGTGATCNtgtttgtttttaaaacgaaAAGTTATGAATTC
ACTGATGATAATGTTGTTTCGGTGATCATTGTTTGGTTGGTTGATTAGAA
AGATGTTGGTGTTTGTCTGAAAAGACAATTTTAATCAAAAGGTTACCATT
ATTAATGAGTATATAACAAAGCGCAAGAAAAACAtacaatatatttattt
ttagaaatttatttttaacattGAGAAATTGAGAAATTCGTTTAATAGAT
TTTTTACTTCCGATaacaattttggttttatattcCGCCTTGGGATTTGT
ATTAAAGAATCCATCCATACTCCTTTCATGACTTATAGTCTAACTCCAGG
AATATTTCTTTAATGATTTCTATAATACGTGAACCCCTCTTCTANAAAGA
ATCCATCCATACTCCTTTCATGACTTATAGTCTAACTCCAGGAATATTTC
TTTAATGATTTCTATAATACGTGAACCCCTCTTCT Run BLAST on NCBI transcript from alignment at scaffold_313:383081..384553+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058708 ID=TCONS_00058708|Name=TCONS_00058708|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at scaffold_313:383081..384553+ (Clytia hemisphaerica)
CTCAGCACTTCGAGCTCTATCAGATTAGCACAAAAGTTTGTTCATTTGAG
CACTTTGAAAAATCGactagtaaaggggggacccttgattgAGCAAAAGA
CCCTGttttaagtcaaattttagggttttatcacctattcagcctgaaaa
ccatcccaAACCGTAATCTATAGGTACATAGGAAGCTAAAAAACAATGGT
TCACAAAGTCCCGTTCAAGGTgggtttttggccatttttcctGGACTAAA
ATGGAACGTTTGCATATCTGTTTTCAGCTTGAAAGAAATCAAGAGATATT
CGATTGGTTCAGAGATCAATTCTGTAGCTCTGCATCcttcgaaaaattgt
tttgtggCTGGAGGTCAAGACTTTCTCATGTACAAGTATGATTATCACAC
TGGAGCCCAACAAGGTAAGTACAAACAATCTGAACTCTCCTCAATTGATA
AAAATAATGTTCTAAATTTCCCAGGAGCAAACCTAAAGGAAGCACCAGTC
AAAATTTGGGAGTAGTCCAATCCAAGTGACATTCTCACAGATACAATCTC
CTTGAAGCGTATAGGTTAAGTGTAACCTTGttgttttctttctcttttgt
aGAAGCTTCACATGCTCATTTTGGACCTGTCCATTGCGTTCGATTTTCAC
CAGATGGTGAAGTGTACGCCTCTGGATCAGAAGATGGAACATTACGGTTA
TGGCAAACAACTGTCGGCAAAACATACGGACTATGGAAAGCTAACAGTGA
TGAAGAGGAACAAAAGAATGAAGTCAATAAAACGAATCATTGTAACGAAA
TTTCTGTTGAAGGTTAAACGTGTATTGTCTGggtaatgttaatgttaata
tCCCTTGAATTAgcatgtgacgtcataactttTTGGTCGTTAATCAGAAT
AATAATTAATAGATCGTTGTCTGGTTTGTTTCCTGTATGTATAAtgtgtt
tgtttttaaaacgaaAAGTTATGAATTCACTGATGATAATGTTGTTTCGG
TGATCNtgtttgtttttaaaacgaaAAGTTATGAATTCACTGATGATAAT
GTTGTTTCGGTGATCATTGTTTGGTTGGTTGATTAGAAAGATGTTGGTGT
TTGTCTGAAAAGACAATTTTAATCAAAAGGTTACCATTATTAATGAGTAT
ATAACAAAGCGCAAGAAAAACAtacaatatatttatttttagaaatttat
ttttaacattGAGAAATTGAGAAATTCGTTTAATAGATTTTTTACTTCCG
ATaacaattttggttttatattcCGCCTTGGGATTTGTATTAAAGAATCC
ATCCATACTCCTTTCATGACTTATAGTCTAACTCCAGGAATATTTCTTTA
ATGATTTCTATAATACGTGAACCCCTCTTCTANAAAGAATCCATCCATAC
TCCTTTCATGACTTATAGTCTAACTCCAGGAATATTTCTTTAATGATTTC
TATAATACGTGAACCCCTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058708-exon-scaffold_313-1491911889:383081..383494 | TCONS_00058708-exon-scaffold_313-1491911889:383081..383494 | Clytia hemisphaerica | exon |
| TCONS_00058708-exon-scaffold_313-1510915933:383081..383494 | TCONS_00058708-exon-scaffold_313-1510915933:383081..383494 | Clytia hemisphaerica | exon |
| TCONS_00058708-exon-scaffold_313-1575043694:383081..383494 | TCONS_00058708-exon-scaffold_313-1575043694:383081..383494 | Clytia hemisphaerica | exon |
| TCONS_00058708-exon-scaffold_313-1491911889:383683..384553 | TCONS_00058708-exon-scaffold_313-1491911889:383683..384553 | Clytia hemisphaerica | exon |
| TCONS_00058708-exon-scaffold_313-1510915933:383683..384553 | TCONS_00058708-exon-scaffold_313-1510915933:383683..384553 | Clytia hemisphaerica | exon |
| TCONS_00058708-exon-scaffold_313-1575043694:383683..384553 | TCONS_00058708-exon-scaffold_313-1575043694:383683..384553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:383081..384553 + |
Blast
BLAST of TCONS_00058708 vs. Swiss-Prot (Human)
Match: STRAP (Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.023e-37 Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 3
Query: 267 SVFSLKEIKRYSIGSEINSVALHPSKNCFVAGGQDFLMYKYDYHTGAQQEASHAHFGPVHCVRFSPDGEVYASGSEDGTLRLWQTTVGKTYGLWKANSDEEE 572
S SL IK + + INS +LHP K VAGG+DF +YKYDY++G + E+ HFGP+HCVRFSPDGE+YASGSEDGTLRLWQT VGKTYGLWK EE+
Sbjct: 210 SAVSLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEED 311
The following BLAST results are available for this feature:
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