TCONS_00058681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058681
Unique NameTCONS_00058681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058681 ID=TCONS_00058681|Name=TCONS_00058681|organism=Clytia hemisphaerica|type=transcript|length=454bp
CGAACAGATAGGCAAAATGAAAATCAGAATAATGAATAACCTCTTAGCTG
CAAGAGATAATTTATCGGGGGACTATACCTTGAAAGTTAATTAAACTTAA
TAATTATCGGCAATCGTTGTAATAGTTTTCGTACAAATAGCAGAACTAAC
ATCCTCTACTTTGATGATGAACTTCTAATATGCTTGTACATGTTTTAAAT
TACACTCTGATATGGACAGATATTCACGTGGAAAGCCTACTAATCGACGA
CTTTGAGACTTCTTTTGACTGATTTCACGGGTACTGTGATCCACCCATTC
ATGTATATATTAATTAAACGGAACATAGAAGGAGCCGTATATTTAAACTG
GGAATTCCATTTTATTCAACGAAAACATAGATAGACACTAGGCAATGGTA
TACTTGTAAACTATGCTAGCTCTGCTCATCATTATTTATGTAATTCAAGG
AAAA
Run BLAST on NCBI

transcript from alignment at scaffold_312:120408..120861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058681 ID=TCONS_00058681|Name=TCONS_00058681|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_312:120408..120861 (Clytia hemisphaerica)
TTTTCCTTGAATTACATAAATAATGATGAGCAGAGCTAGCATAGTTTACA
AGTATACCATTGCCTAGTGTCTATCTATGTTTTCGTTGAATAAAATGGAA
TTCCCAGTTTAAATATACGGCTCCTTCTATGTTCCGTTTAATTAATATAT
ACATGAATGGGTGGATCACAGTACCCGTGAAATCAGTCAAAAGAAGTCTC
AAAGTCGTCGATTAGTAGGCTTTCCACGTGAATATCTGTCCATATCAGAG
TGTAATTTAAAACATGTACAAGCATATTAGAAGTTCATCATCAAAGTAGA
GGATGTTAGTTCTGCTATTTGTACGAAAACTATTACAACGATTGCCGATA
ATTATTAAGTTTAATTAACTTTCAAGGTATAGTCCCCCGATAAATTATCT
CTTGCAGCTAAGAGGTTATTCATTATTCTGATTTTCATTTTGCCTATCTG
TTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036970XLOC_036970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058681-exon-scaffold_312-1491911889:120408..120861TCONS_00058681-exon-scaffold_312-1491911889:120408..120861Clytia hemisphaericaexon
TCONS_00058681-exon-scaffold_312-1510915933:120408..120861TCONS_00058681-exon-scaffold_312-1510915933:120408..120861Clytia hemisphaericaexon
TCONS_00058681-exon-scaffold_312-1575043694:120408..120861TCONS_00058681-exon-scaffold_312-1575043694:120408..120861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:120408..120861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.868843	0.564839	1.47562	1.44367	0	0	1.67555	0.697169	0.122026	0.453447	0.146709	0	0	0	0	0	0	0	0	0.16108	0	0	0	0.150948	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top