TCONS_00005814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005814
Unique NameTCONS_00005814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005814 ID=TCONS_00005814|Name=TCONS_00005814|organism=Clytia hemisphaerica|type=transcript|length=494bp
gaaaaattacagaagcaaaagtcaaaatcaaatgTTTGGCGAGCTACAAC
TGGTGGATATCAACAACAATCAATCCTGCCTGCCTTGGCTTGTTTGTATG
TAAAGTCTGAAGACCANNGATAATTCCCCTGAGGGTGATCAGTCCCAAAA
ATGTACCAAAGAATTGGAAACTGAGGATCTAATAGCAGAACTTTGCTTTT
ATGCCTCCTTGAATTATGTAAAATTCTGTTTGCGGAAGTATCAATATGGC
AAAAGTGTACTAGATATTGAAAATGACATGTACAAAGAAAAACTTGACAC
CCTGAAAGAAACTGCAAACTTcttgaaagtgccaaaatataatgaaaaaa
ccAAAAGATCATTTTCTCATCTGATCATCTGCAAGATACAAAACCTCTTA
CCGGATAATTGCTCCATCTGCAACAGAAGATATAAAATTGGTCTTATGGA
GCTCCCGATCCTTGAATATGCCATTTGTGGTCAAGGTGTACACA
Run BLAST on NCBI

transcript from alignment at sc0000059:675010..675503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005814 ID=TCONS_00005814|Name=TCONS_00005814|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0000059:675010..675503 (Clytia hemisphaerica)
TGTGTACACCTTGACCACAAATGGCATATTCAAGGATCGGGAGCTCCATA
AGACCAATTTTATATCTTCTGTTGCAGATGGAGCAATTATCCGGTAAGAG
GTTTTGTATCTTGCAGATGATCAGATGAGAAAATGATCTTTTggtttttt
cattatattttggcactttcaagAAGTTTGCAGTTTCTTTCAGGGTGTCA
AGTTTTTCTTTGTACATGTCATTTTCAATATCTAGTACACTTTTGCCATA
TTGATACTTCCGCAAACAGAATTTTACATAATTCAAGGAGGCATAAAAGC
AAAGTTCTGCTATTAGATCCTCAGTTTCCAATTCTTTGGTACATTTTTGG
GACTGATCACCCTCAGGGGAATTATCNNTGGTCTTCAGACTTTACATACA
AACAAGCCAAGGCAGGCAGGATTGATTGTTGTTGATATCCACCAGTTGTA
GCTCGCCAAAcatttgattttgacttttgcttctgtaatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003312XLOC_003312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005814-exon-sc0000059-1491911889:675010..675503TCONS_00005814-exon-sc0000059-1491911889:675010..675503Clytia hemisphaericaexon
TCONS_00005814-exon-sc0000059-1510915933:675010..675503TCONS_00005814-exon-sc0000059-1510915933:675010..675503Clytia hemisphaericaexon
TCONS_00005814-exon-sc0000059-1575043694:675010..675503TCONS_00005814-exon-sc0000059-1575043694:675010..675503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:675010..675503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0958	1.71086	0.345025	0.523679	1.45845	1.07457	1.84147	1.63835	0.378802	0.587098	1.31649	0.479325	0.775284	1.3162	0.158968	0.657245	0.373797	0.142724	0.169114	0.151361	0.248742	0.829168	1.30467	0.344386	0.674844	1.01378	0.682765	0	0.779549	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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