TCONS_00058507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058507
Unique NameTCONS_00058507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058507 ID=TCONS_00058507|Name=TCONS_00058507|organism=Clytia hemisphaerica|type=transcript|length=2389bp
TTTTAACTCGTGTATAAAAGGATAAGAATTTgcaaattttatgaattttc
gtTTTCAGAAATAACTCATTATTCCATTTTGATGCAAGATGGTGAATCTT
TTGACCAAACTATCCGCCCCACGCGGCACAATAGTGCACCAAACATCAGA
AAAAGGTCAACGAAAAATCAACATTAACGTTGGTGGCGAGAAACACTCAC
CTTACGTGAGTACTTTACAGAACGTTCCGGATTCTCCTCTATCCTGGATT
ATACGTGATGAATTCCGGAATGACTTAGATTATGATTCAGTCGAAGATGT
TTATTATTTTGACCGACATCCAGGCATCttttccgccattttgaattatt
ttcaaacgGGAAAATTACATTGTCCACGCGATGTTTGTGGACCAATGTTT
CAAGAGGAATTGAATTTTTGGGGAATCGATGAAACACAAATGGAAGCTTG
TTGCTGGCCAAACTACACCACACATCGAGAGAtccaagaaaatttgaaaa
tgcttcaCATTGCAAGAAAGAAACAACACTGTCAACAAGgtTCAGAAGAC
GTAACCAAGCAACATCCACCATTAACAACAGATCCATATCGAATGATCAG
TAGTGGTCAAGCTAAATGGCATCGTTATCAAATGAAAATCTGGGAAGTCT
TAGATGAGCCGTATTCCTCTGGGCTAGCAAAgatgTTTGCATATATCTCC
TTATTTTTCATTGTTCTGTCCATCATCACATATTCTCTCATCACCATCGA
AGATGTCAACTTTAAACAAACACCATGCCCAACTACACAAGAACTGCTCG
TGAACCAACTTGCCAATAATTTGACATCATCAAACACGTCAGtcacCAGT
TGCACCAGTCGTACTCAAGGAGCGAATATTTTACATGGTTTTGAAATCCT
ATTCGCGTTATGGTTCACGTTAGAAATCGTACTACGTCTCACATTTTGCC
CTGACAAACTGGATTATCTGAAAACTCTTTCCAACTGGGTTGACCTATTC
GCTGTCATTCCTGTCTATTTATTACTTCTCTGGACAGATCAATCTCAAGT
GTTAATGATGCTCAATATGATCAGATACCTCCGTATTTTCCGCCTTTTCA
AGCTGTTATACGATCTTCATATTTTGGGAAAAACCTTACAAGCCAGTATC
AACCAGCTTCTCATTTTGTTGATCATCTTAACGGTGCCGACTATCATGTT
TAGCAGTTTTGTATATTACTCGGAACTTTTCGGTGGAAGCGAGAAGAGCA
AACAGGATTTCTCAGAAATACAAAAAGGCATGTGGTGGTCTGTGATCACT
TCAACGACTGTCGGTTATGGTGACATTGTCCCCGAATCCATTATCGGGAA
ATTAGTCGGGGCTGCCGCATCTGTAATCGGTATAATTATCGTCTCAATAA
CGGCGTCAGTCATTGGTTGTAACTTTGAACAATATTATAGCGTCGCTATA
ACACAATTACGAATTCCAGCTAAAAATTCAACCGCTTTTAAGGAGGTCGT
TAAAAGGAATACATTAATTGCGCAATTAAGACCACACGGTAAAGATGTCA
ATTCCAGCATCAAATCTGATGATTCGAAAGATTCCGGATATGGGCGGTCA
CCTGTACCGCCCTCCGATTCCGCCAATGCGTCACCAGAACGCCAACAACA
GCTTACTGAGAAGAATATTGTTGTTGCTATGGATCGTAATGGACAACCGA
ATATAAATGGGACGGCTAAAGTTTGATCAAACTGATTTCTTAGTAGATGA
ACGTCTAGATTTAAAATGAGGTCTTATGATGTGCAAACTCGCTTACCACT
GCCTCCTAAGAAATGAAGTAATTTGGTGATGATAGATTGACTGTAAATTT
AAATGACGATAATTTACAAATCAAAAGGATTATTTGGTCCGGAAGTACTT
GTCTCTCGTTATATTGATTTGAGTTTTATGTCTAAATATTTTGTCTAATA
AATTATATTGTGTCAGTTTCAAATAGGTCAATTTTCCCAGTACAGGCTCT
ATCAGAATAATAGTTTTGGAGAAATTGAAAGCTGATTAGGATCTTTACTA
AAGAACTGCGATATGTTTCAACAAAATTTAAATGAGAACGGAATTAAATA
TATACAATGATTGTGctacaaaaaaattaacataccttatcataaaaaat
gtgtataaaatttgtaaatcataatatttttgatttttcgatttttcgat
ttttcgtggATTTAAAGATattgtttatcaaaaaagaaaaattaagtggT
ACCACCCTTTATAGCACTTTTATCTCAAGGAACATGCATCGAATGGTTTC
CAGAGGAACCCTTGTCCATCGACGGGGCATGTTGTTATGGTTCCCCTACG
TAGGATTCTTAGATCGaatttttggcaaaagattGCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_311:1336318..1344045+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058507 ID=TCONS_00058507|Name=TCONS_00058507|organism=Clytia hemisphaerica|type=transcript|length=7728bp|location=Sequence derived from alignment at scaffold_311:1336318..1344045+ (Clytia hemisphaerica)
TTTTAACTCGTGTATAAAAGGATAAGAATTTgcaaattttatgaattttc
gtTTTCAGAAATAACTCATTATTCCATTTTGATGCAAGATGGTGAATCTT
TTGACCAAACTATCCGCCCCACGCGGCACAATAGTGCACCAAACATCAGA
AAAAGGTCAACGAAAAATCAACATTAACGTTGGTGGCGAGAAACACTCAC
CTTACGTGAGTACTTTACAGAACGTTCCGGATTCTCCTCTATCCTGGATT
ATACGTGATGAATTCCGGAATGACTTAGATTATGATTCAGTCGAAGATGT
TTATTATTTTGACCGACATCCAGGCATCttttccgccattttgaattatt
ttcaaacgGGAAAATTACATTGTCCACGCGATGTTTGTGGACCAATGTTT
CAAGAGGAATTGAATTTTTGGGGAATCGATGAAACACAAATGGAAGGTGA
GCAGTTTGTtttaacgtccatctaacgttatattaTGGATGTTATGGGCG
TTAGTTTGACGCTATTCTGGCGTTTGTACCAGCTTGGCGTCATCTTGGGT
GTATGAGAAAACCGTAATTATTTTCTCGGGGTAATCTTGTGGAGATAAAC
AATAAGTAACATACATTCATTTCAAGATTGAAATTATGTTTCATTTTAAG
CATTCGGTCCAATAAGAGTTTTGGTTGGCAGCTATCCGAAAATATACTTT
GATTTGGGCTGAGTTttgtacacccccttctcacagacccggtaggattt
tctCAGCCATTAGGgatgaaaataacggactgaaactctatggggattga
tattcctgtattttttatggctgtggatgtcaattcttttgttttcaatt
cagaATATTCAGTAGGGATGGGAAAAAAAGAgtcatattttgcagtgagg
attggtttctttgattattttcaaaaattggagtataaatttccaccggg
gacgatatttcggacaatttttaaattgaagaaggttcccagtgggtctg
tgagaagggggtgtttttgtATCTTTACCTGCAGTATTCTTAGAACCTTG
GCCACTGATTTTGGGCATTCAAGCCTAAATTATCATGTCTGTTTCATCTt
ccaatttcatcatttttataaCCTTTTCTCACACTTTAGCTTGTTGCTGG
CCAAACTACACCACACATCGAGAGAtccaagaaaatttgaaaatgcttca
CATTGCAAGAAAGAAACAACACTGTCAACAAGGTAGCTTCCAAATAGTCT
CAACAAGTTTCCAAATAAACCTTTAGGTGAACACGacggtctattgaata
acatATTACTCTGACAGCATACaataatagatcttatcggagtttttgat
ttttctaaaaaagcgatgcattgtgggattaatttcgggagtattacaat
agaaatctcttaggaattcctcgagagaattctattgtaattaCATATAT
TACATATAACACCAAAAATCACGGCAGTTATGCCCGAAAAAATTGCCAAT
CACACCATTAGGTGAACCGCTGTGCGGGCTCGTTAAAGGTACTTACTTGC
GTaacgatacacgtttttttgtaagaacaaactatataagaacataaggc
ttcgatagccaaaatgttaagaacatgttaagaacatttaagcctttGGG
GAATCTAAAAGACCCGATTTCTTAggtaaatggacaaaaatacccaTAAA
TTGgttaaaatgttaagaacatgttaagaacatttaagcctttGGGGAAT
CTAAAAGACCCGATTTCTTAggtaaatggacaaaaatacccataaattgg
ttaaaataagaacatgttaagaacattttaaagcttaaaCCTctaaaagc
taagaacatccgaaggcttcaaaacttttggatgttcttataaaaaaaca
tgtatagcgTGTACCATGCATATTCcatttttctttgaaaggtTCAGAAG
ACGTAACCAAGCAACATCCACCATTAACAACAGATCCATATCGAATGATC
AGTAGTGGTCAAGCTAAATGGCATCGTTATCAAATGAAAATCTGGGAAGT
CTTAGATGAGCCGTATTCCTCTGGGCTAGCAAAggtttgaaattgttttt
tatttaaatacaCCATGAGACCGTTTCACTATAAGTTGCCAAAGTTTACA
CGTtcctaaatttttcaattctttggatgttcttaacttttagagtttta
agcctaaaaacgttcttaacatgttcttatgttcttaacttgttcttgtt
cttatgtttttatatagtttgttcttataaaaaacgtgtaccataGCGCA
GTGACGTTAAATGTGTAAGTCCTTGCAGATTGACACCCTTACAGATACAT
CTCATCCTTTTCGGCTCTGGTAGACTCATTTCCAATTCTTTTGCTTTAGG
GGTGAAAggtttcgaaatttattttcgtttcaatatttttagtaAAACTT
TCTTTATGAAATACCCTTTTAAAGGCGCACATTTCTAGCTTGCAGAGACC
TCACTCGTACATTCTTCTTGTTGCAAGATAAAGCGACATAAATCCATAGA
ACAATTTATATTCCCAGCAAGTGGACGCTTCAAATAAAGTAAGCAAGTTA
TTAGAGAGGTTGTATTGAtagtttttatcattttcatttttttagatgTT
TGCATATATCTCCTTATTTTTCATTGTTCTGTCCATCATCACATATTCTC
TCATCACCATCGAAGATGTCAACTTTAAACAAACACCATGCCCAACTACA
CAAGAACTGCTCGTGAACCAACTTGCCAATAATTTGACATCATCAAACAC
GTCAGGTAATGTTTAAATCGCCGAATAATCCGGGGGGCTCTCGCTTTTTC
GTTACTAAGATAACCCTTTTTGATCAAGTGAATAGCGCTGGCGCTTATGG
GGTAGGAACATAgatagatatcttatataaaacactagttatagctactc
tgtatttcccaacaacgacaggtgaagcaaaataatgcgccatctttgct
gaaagtaggtcacaANTTttagagttttaagcctaaaaacgttcttaaca
tgttcttatgttcttaacttgttcttgttcttatgtttttatatagtttg
ttcttatacaaaacgtgtaCCATAGCGCAGTGACGTTAAATGTGTAAGTC
CTTGCAGATTGACACCCTTACAGATACATCTCATCCTTTTCGGCTCTGGT
AGACTCATTTCCAATTCTTTTGCTTTAGGGGTGAAAggtttcgaaattta
ttttcgtttcaatatttttagtaAAACTTTCTTTATGAAATACCCTTTTA
AAGGCGCACATTTCTAGCTTGCAGAGACCTCACTCGTACATTCTTCTTGT
TGCAAGATAAAGCGACATAAATCCATAGAACAATTTATATTCCCAGCAAG
TGGACGCTTCAAATAAAGTAAGCAAGTTATTAGAGAGGTTGTATTGAtag
tttttatcattttcatttttttagatgTTTGCATATATCTCCTTATTTTT
CATTGTTCTGTCCATCATCACATATTCTCTCATCACCATCGAAGATGTCA
ACTTTAAACAAACACCATGCCCAACTACACAAGAACTGCTCGTGAACCAA
CTTGCCAATAATTTGACATCATCAAACACGTCAGGTAATGTTTAAATCGC
CGAATAATCCGGGGGGCTCTCGCTTTTTCGTTACTAAGATAACCCTTTTT
GATCAAGTGAATAGCGCTGGCGCTTGTGGGGTAGGAACATAtatagatat
cttatataaaacactagttatagctactctgtatttcccaacgacgacag
gtgaagcaaaataatgcgccatctttgctgaaagtaggtcacaataggtc
acagttcggtaccggcaattttttcaaccaaGCAAAAAAACTTGACGAGG
TGAAAGATAGGCTtgattgatcaaattgccggcaccgaagatggtggatt
attttgattcaaatagggacggagtagctctatctagtgttttacaTTTA
ATTTTTACGTCAGAGGGCCGAAATGTTGTTAACAGTGTAAACAGGTGAAG
ATTTTGGGGAGGCAAATAAATTACAAAAGTGTATAAGGTTCCGAAATGTG
TATTTGTCGAAATGAGTAAATTATAGTAAACttgaaatgattgaaatttg
CCGAAATCTGTGAAATGAAATAAATGTGAAATATTGTTCGCTTTGGGGCT
GATGTTGGGGATGTACCATGCAATATGAGGTCTAACTTAAGCTCCTAAGA
CCGTAAGGATGACGGCCCGTCGAaggactgtaaggaggacagtCAAATGA
GTTtggactgtaaggaggacagcctTTACTCCTAACATGTATGTGCATGT
AGATACTGTATAAGCTAGCCACTAGGTAGGAGTGTGGGGTTCCGAAGGGA
CCCACACCAATGGAAAGCATATTGCGTGATACATCCCAAAAGAAGACAAA
AAAGACTAGTCCCTGGACTAAAAACACCTTTTGGGGAAAAAACCTGGCTG
GGACTAGCTGCGCTGCTGCTTGTACGTCCTTCGACGTCGGACGTGGGCAT
CGTCGTCATTCATCCTGAAATGATAGAGGGAAAAAAGCAAGCAAAAACTA
GCGCATACGAGTACCACGTCCCTCCCTAACTCCATGTATGGAAGGGAAGG
GAGGGTGGGAAATTGAAAACACAAGAATAAGAAAGACTAAACGTGGTTTC
GCTCCCGTATAAATAGTGATACTGGGACTTAAGCAATGGCTTCTAGAGTG
AGTAGCATGATGGCGGAAGGGTGTATTGCGGGCGTTAATTTGTCTTCCTT
AAAATTAACTTAAGCGAACTAAAGTTAGCTCTAAAAAATATCTGTGGATA
GAAACCATTGTACAGACCAGAGTCTGTAAATTCTTTTTTGCGTTCTAACT
GATATTGTATAGACCAAAGGAGCCCTGCGACCCTGTTTTTGCATCTAAAC
AACGGGCAAGCCGCTATGGGACCGCATCAGTCCTGAAAAATGGTGAAATA
GCCTTTAGCAACGACACGAAAAAACCTTAAATAATGACTCCTTAATCTGC
ATGTAGACTGTAAACACGCTATCATTGAGCCTTTCACTAGAAAGGCTttg
ctctagtttagacggtaCGCTTTCcaccctgcctattctaattgtgaatt
aaagcgGGCAaaaagttggctgtctaaagtcaatgcattgccctttttta
acgtcaatgcaatgtcttttttcaatcttttctaagcaaagattttaaca
ccTTTGCGCCTACTTTTCGCCTACTcaaacaattagaatagacagggcag
aaagtcgaccgtctaaactagagctttgATTCTCACACATACAAGCTCTC
ATCCcatatcttttcaatgttacgTTATAATTTTTCGTCTGAGCCTGTTC
AGAATCACACCACTTCATATGAAAGCTCTTAAGAAGCATACCCGTCTGAC
TAACAACGTCTTTTCAACATTCATCCAACGCTATATTGGCGTCGTGAACA
TACCAGATAAACGTAAAAACAACGTTGTGGTTCAGCTCGGTAACTAAATA
ACCATTGAAACTTGCCAAATAAATTACCtgtggtttttatttttttcagt
cacCAGTTGCACCAGTCGTACTCAAGGAGCGAATATTTTACATGGTTTTG
AAATCCTATTCGCGTTATGGTTCACGTTAGAAATCGTACTACGTCTCACA
TTTTGCCCTGACAAACTGGATTATCTGAAAACTCTTTCCAACTGGGTTGA
CCTATTCGCTGTCATTCCTGTCTATTTATTACTTCTCTGGACAGATCAAT
CTCAAGTGTTAATGATGCTCAATATGATCAGATACCTCCGTATTTTCCGC
CTTTTCAAGCTGTTATACGATCTTCATATTTTGGGAAAAACCTTACAAGC
CAGTATCAACCAGCTTCTCATTTTGTTGATCATCTTAACGGTGCCGACTA
TCATGTTTAGCAGTTTTGTATATTACTCGGAACTTTTCGGTGGAAGCGAG
AAGAGCAAACAGGATTTCTCAGAAATACAAAAAGGTACCTTacaaataca
tttatttttaatgttaaTTGATCTCTTTTGCCAAGGCCTCTTGCCGAAAT
TTCATACTTCAATGTCAACCGATCCCTTCATTTCCAAGGCTCAATCAACG
TCCCTGAGCTTCTGTCTTAATTAAAAATGGTTTTAAACTACAGTATTGAT
TCGGGAGAGACTTAAATGTTATGTGATAGTTTTTCTAAAACGGGTAATTC
gttcctaaaattttgcaccatTCTGTAACTAAGCATCTACATTTGTTTAA
ATAAGAATCAGTAGAATTTTGCTGGGGCTcacctgttcttattttttggc
actttgcgcctcaaattgttcttatcctgttcttattatAGGATGTTCTT
GAGGTATTTTcggcgttatacccaatttttactactttgacccctcaatt
gtttgaaattgagtaatttcgtatttttggaaattttgagcctcattgtt
cttataaaaacagtgtATTCATTTCATAGCAATAGAGGAGATTTTTGACG
TTCGAGGAACAAGGCTGTTAAACCAGACAGTTGGCAATAATAATTCATTT
ATCCATTTCACTTTAGGCATGTGGTGGTCTGTGATCACTTCAACGACTGT
CGGTTATGGTGACATTGTCCCCGAATCCATTATCGGGAAATTAGTCGGGG
CTGCCGCATCTGTAATCGGTATAATTATCGTCTCAATAACGGCGTCAGTC
ATTGGTTGTAACTTTGAACAATATTATAGCGTCGCTATAACACAATTACG
AATTCCAGCTAAAAATTCAACCGCTTTTAAGGAGGTCGTTAAAAGGAATA
CATTAATTGCGCAATTAAGACCACACGGTAAAGATGTCAATTCCAGCATC
AAATCTGATGATTCGAAAGATTCCGGATATGGGCGGTCACCTGTACCGCC
CTCCGATTCCGCCAATGCGTCACCAGAACGCCAACAACAGCTTACTGAGA
AGAATATTGTTGTTGCTATGGATCGTAATGGACAACCGAATATAAATGGG
ACGGCTAAAGTTTGATCAAACTGATTTCTTAGTAGATGAACGTCTAGATT
TAAAATGAGGTCTTATGATGTGCAAACTCGCTTACCACTGCCTCCTAAGA
AATGAAGTAATTTGGTGATGATAGATTGACTGTAAATTTAAATGACGATA
ATTTACAAATCAAAAGGATTATTTGGTCCGGAAGTACTTGTCTCTCGTTA
TATTGATTTGAGTTTTATGTCTAAATATTTTGTCTAATAAATTATATTGT
GTCAGTTTCAAATAGGTCAATTTTCCCAGTACAGGCTCTATCAGAATAAT
AGTTTTGGAGAAATTGAAAGCTGATTAGGATCTTTACTAAAGAACTGCGA
TATGTTTCAACAAAATTTAAATGAGAACGGAATTAAATATATACAATGAT
TGTGctacaaaaaaattaacataccttatcataaaaaatgtgtataaaat
ttgtaaatcataatatttttgatttttcgatttttcgatttttcgtggAT
TTAAAGATattgtttatcaaaaaagaaaaattaagtggTACCACCCTTTA
TAGCACTTTTATCTCAAGGAACATGCATCGAATGGTTTCCAGAGGAACCC
TTGTCCATCGACGGGGCATGTTGTTATGGTTCCCCTACGTAGGATTCTTA
GATCGaatttttggcaaaagattGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036859XLOC_036859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058507-exon-scaffold_311-1491911889:1336318..1336763TCONS_00058507-exon-scaffold_311-1491911889:1336318..1336763Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1336318..1336763TCONS_00058507-exon-scaffold_311-1510915933:1336318..1336763Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1336318..1336763TCONS_00058507-exon-scaffold_311-1575043694:1336318..1336763Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1491911889:1337457..1337549TCONS_00058507-exon-scaffold_311-1491911889:1337457..1337549Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1337457..1337549TCONS_00058507-exon-scaffold_311-1510915933:1337457..1337549Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1337457..1337549TCONS_00058507-exon-scaffold_311-1575043694:1337457..1337549Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1491911889:1338259..1338401TCONS_00058507-exon-scaffold_311-1491911889:1338259..1338401Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1338259..1338401TCONS_00058507-exon-scaffold_311-1510915933:1338259..1338401Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1338259..1338401TCONS_00058507-exon-scaffold_311-1575043694:1338259..1338401Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1491911889:1338963..1339122TCONS_00058507-exon-scaffold_311-1491911889:1338963..1339122Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1338963..1339122TCONS_00058507-exon-scaffold_311-1510915933:1338963..1339122Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1338963..1339122TCONS_00058507-exon-scaffold_311-1575043694:1338963..1339122Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1491911889:1341917..1342351TCONS_00058507-exon-scaffold_311-1491911889:1341917..1342351Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1341917..1342351TCONS_00058507-exon-scaffold_311-1510915933:1341917..1342351Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1341917..1342351TCONS_00058507-exon-scaffold_311-1575043694:1341917..1342351Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1491911889:1342934..1344045TCONS_00058507-exon-scaffold_311-1491911889:1342934..1344045Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1510915933:1342934..1344045TCONS_00058507-exon-scaffold_311-1510915933:1342934..1344045Clytia hemisphaericaexon
TCONS_00058507-exon-scaffold_311-1575043694:1342934..1344045TCONS_00058507-exon-scaffold_311-1575043694:1342934..1344045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1336318..1344045 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.342686	0.408014	0.25474	0.271357	0.0119485	0.0101019	7.87262	8.07853	6.63896	5.30331	3.71852	5.04968	2.20114	1.95996	0.882709	0.934008	1.54433	1.96372	5.74662	5.21902	4.12378	4.46739	1.7282	2.95409	3.36948	3.88292	2.77101	2.84858	0.259885	0.0956104
Blast
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BLAST of TCONS_00058507 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 7.895e-84
Identity = 165/452 (36.50%), Postives = 249/452 (55.09%), Query Frame = 2 
Query:  164 KININVGGEKHSPYVSTLQNVPDSPLSWIIRDEFRNDLDYDSVEDVYYFDRHPGIFSAILNYFQTGKLHCPRDVCGPMFQEELNFWGIDETQMEACCWPNYTTHREIQENLKMLHIA----RKKQHCQQGSEDVTKQHPPLTTDPYRMISSG-----QAKWHRYQMKIWEVLDEPYSSGLAKMFAYISLFFIVLSIITYSLITIEDVNFKQTPCPTTQELLVNQLANNLXXXXXXXXXXXXXXQGANILHGFEILFALWFTLEIVLRLTFCPDKLDYLKTLSNWVDLFAVIPVYLLLLWTDQSQ-----VLMMLNMIRYLRIFRLFKL---LYDLHILGKTLQASINQXXXXXXXXTVPTIMFSSFVYYSELFGG-----SEKSKQDFSEIQKGMWWSVITSTTVGYGDIVPESIIGKLXXXXXXXXXXXXXXXXXXXXXCNFEQYYSVAIT 1453
            +I INVGG +H  Y STL+ +P + L+W+   +  +  DYD   D ++FDRHPG+F+ ILNY++TGKLHCP DVCGP+++EEL FWGIDET +E CCW  Y  HR+ +E L     A            G  D       L       +S          W R+Q +IW + ++PYSS  A+  A+ SLFFI++SI T+ L T E  N      P   +  +  + N       +        +    L   E +  +WFT E ++R+ FCP+K++++K   N +D  A++P YL +  +  S      VL  L ++R++RI R+FKL      L +LG TL+AS N+ L+L+I L +  ++F++ +YY+E  G      S      F  I  G WW+V+T TT+GYGD+ P++  G LVGA  ++ G++ +++   VI  NF  YYS+A+ 
Sbjct:    9 RIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFN------PIVNKTEIENVRNG------TQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00058507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC17.895e-8436.50Potassium voltage-gated channel subfamily C member... [more]
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