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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058504 ID=TCONS_00058504|Name=TCONS_00058504|organism=Clytia hemisphaerica|type=transcript|length=314bp
ggacgttgtgaacgttagataaacgttgaaacaacgctgtgtaccagctg
ggaaggagcattttttgatgtctgaaaatttattttacaaatgccttgaa
aaaaaatcttgaacgTTTTAAAAGAAATTGGTACTAAAATTGGATGACAA
TTTTAACGACTCTTCAAGGAATTGGTACTAGGATTTGTTCAGATAAACAG
GGAAgaatattttgattgattttaattGGTTACGAAGAAGATAGGAAGCA
TGGACCCCAGTACTCGTTCTGATGAGAGAATGGACGATGCGACACGATAC
AAAATCATTGCAGN Run BLAST on NCBI transcript from alignment at scaffold_311:1314142..1317223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058504 ID=TCONS_00058504|Name=TCONS_00058504|organism=Clytia hemisphaerica|type=transcript|length=3082bp|location=Sequence derived from alignment at scaffold_311:1314142..1317223+ (Clytia hemisphaerica)
ggacgttgtgaacgttagataaacgttgaaacaacgctgtgtaccagctg
ggaaggagcattttttgatgtctgaaaatttattttacaaatgccttgaa
aaaaaatcttgaacgTTTTAAAAGAAATTGGTACTAAAATTGGATGACAA
TTTTAACGACTCTTCAAGGAATTGGTACTAGGATTTGTTCAGATAAACAG
GGAAgaatattttgattgattttaattGGTTACGAAGAAGATAGGAAGCA
TGGACCCCAGTACTCGTTCTGATGGTAATTTGACCAACACTTTTAAGTCA
TCTTAATTCGAATTCTAACGGGTGGGGCGTTGGTTATTAATTGAGCTACA
GAGAGTTTGAGTTCTAAAGGGACCAGAAAAATCGATCGCTGGTGTTGCGG
CTGCTCGAGTGATGGAGAGATGCGTTCATTAGAGACTCTAAAAGGAGTTT
GAGTTACTGCAACTCCGGGGGGTGTGAGCCAtaaagggtccctttttcac
aacctcgaaagtctctcaaaaaccattaaaaagcaaattgagtcgcaaaa
ttcacgaaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTCcgatta
aaaaaatctaaaatttaatttcgatttaaaaaatttaaaaatcgagtgaa
tatcgataaaatttttgaaaaaagtctctctaagggtcccaaaaacgcaA
ATCTTtgctctctctaagggtcaattttcgatttttgcctCGCAAACATA
GTTTCTTCCCAAATACCACGTCACATGATAGCATTTTTAAAATCCCTAAA
AATTTTATCGTTCAGAAggtaaagttttcttttaaaagtcaaCTGTACTG
TTGACTTTCTCTTAATCGATCGCCAATTGAATAtcatgggataaactttc
gcggttaGGCCtatatccgcgaaattcaaaaatttcgcggggacttaatt
tcgcgggtggcactattgggtggcaatattttcacgatgtTGTggctttt
actgtcaaatcatgcatgttggttgttgaattACACATTAtgtgcgcttc
tttgatgcaaatAAACATTGGTatatttatttgacattttttgtttgagt
tttgtttagaaatatttcgcggatgaggcccttccaaatttccactGGGA
CTTAACTTCGCGGGTTTTCGCGGATGACAgccaatccgcgaaatccgcga
aatttaatccccgcgaaagtttatcccattaaagtaagaTTCTAATTACA
TAGACTATTTTATACTATACTTTTCAGCCGAGGGACCCATATTccagttc
gaattatagagagattgGAATAGTAGaagctcgaattagagagagctgaC
AGTATTTTCATCATCTTTATAATTGGGCATCAACAGACTTATTGCCTTAT
TtactgttttttatttaaaagtaaatttttctaagatttcTTCNgggggg
ggggggggggggtgtgagCCAtaaagggtccctttttcacaacctcgaaa
gtctctcaaaggggtacaaaaaccattaaaaagcaaattgagtctcaaaa
ttcacgaaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTccgatta
aaaaatttaaaaatcgagtgaatatcgataaaatttttgaaaaaagtctc
tataagggtcccaaaaacgcaAATCTTtgctctctctaagggtcaatttt
cgatttttgtctCGCAAACATAGTTTCTTCCCAAATACCACGTCACATGA
TAGCATTTTTAAAATCCCTAAAAATTTTATCGTTCAGAaggtaaagtttt
ttttaaaaagtcaaCTGTACTGTTGAGTCTCTCTTAATCGATCGCCAATT
GAATTAGAATAAGATTCGAATTACATAGACTATTTTATACTATACTTTCC
AGCCGAGGGACCAATATTccagttcgaattatagagagattgGAATAGTA
GaagctcgaattagagagagttgacagTATTTTAATCATCTTTATAATTG
GGCATCAACAGACTTATTGGCTTATTTActgtttttcatttaaaagttaa
tttttctaAGATTTCTTCTCAActtattttagtttttcttctattttgat
aaaattagaaAGATATTCATATCTGCACAAGAAAATAATTCGCTACAATT
TGGAGTGAGATAGacaaaaaaattaggaaaggaTCTATAGGGAAAATCTC
GAAAAGACTGTAACAGTTTTTGAAGAAGataatttttcactttctttttc
aatatCTTGAGTTCTGGcaggtgattttttttctctattttctgTCTTAA
AAACTGTAAtctactttttcactttttcagcCTATACATTATTTCTATTT
TCTCCTTTCCTTGTTTTATCTACCTCATTTTCTTGCTAATGTCAAACCTT
TTGACTTTTTAAGCCTATTTAAGTTTTTGTCATATCTTTCTTCCTCGATA
GTTCGTGATAGATTTTGCTGTGTTTCACTCATTTCACTCACACTGATGAA
GTTTTCAATAACACAAATCATTGAAACAGCCCAGCCTGCAcgtaacgttg
tttcaacgtccatcaatgttcacaacgtctatataacgttagataaacgt
tgaaacaacgttgtgtgtcagctgggaacgTATTTCTAACTTCCGATGTA
CGTTATTGCAACGTGTTTccgacattacatcatggacccaacaacttgat
tggttgcaagtgacgtattcatgatatgtaccattgcaatgtcttccacg
gaccgaacagctgattggttgaaagtgacgttgATTTTACCCAAacagct
gttgggtctgtggtgtaatatcagaagacattgcaatggtgcatatcatg
aattgcctGATtctacgtcacttacaaccaatcagctgatGGTTCTATGG
ATGTAATGTAGCAAGACGCAACAAATCTAGGAGAATCTGAAGTTTTAGAC
CAAAAGAATACGGCTTGATTTTATGCTTTATGATTGAGATATTCTAAGTA
TTAGCCGTCAAGTAATAATTtctaatttattatttttctcagAGAGAATG
GACGATGCGACACGATACAAAATCATTGCAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058504-exon-scaffold_311-1491911889:1314142..1314415 | TCONS_00058504-exon-scaffold_311-1491911889:1314142..1314415 | Clytia hemisphaerica | exon |
| TCONS_00058504-exon-scaffold_311-1510915933:1314142..1314415 | TCONS_00058504-exon-scaffold_311-1510915933:1314142..1314415 | Clytia hemisphaerica | exon |
| TCONS_00058504-exon-scaffold_311-1575043694:1314142..1314415 | TCONS_00058504-exon-scaffold_311-1575043694:1314142..1314415 | Clytia hemisphaerica | exon |
| TCONS_00058504-exon-scaffold_311-1491911889:1317184..1317223 | TCONS_00058504-exon-scaffold_311-1491911889:1317184..1317223 | Clytia hemisphaerica | exon |
| TCONS_00058504-exon-scaffold_311-1510915933:1317184..1317223 | TCONS_00058504-exon-scaffold_311-1510915933:1317184..1317223 | Clytia hemisphaerica | exon |
| TCONS_00058504-exon-scaffold_311-1575043694:1317184..1317223 | TCONS_00058504-exon-scaffold_311-1575043694:1317184..1317223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1314142..1317223 + |
Blast
The following BLAST results are available for this feature:
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