TCONS_00058503 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058503
Unique Name	TCONS_00058503
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	564

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:1306598..1317223+

transcript sequence

>TCONS_00058503 ID=TCONS_00058503|Name=TCONS_00058503|organism=Clytia hemisphaerica|type=transcript|length=564bp
TGAACCATTCTCTTTgttctgtgtgtcactttcacTCACATTTGGCGTTG
GATTGTGTTCGCAAATTACAACTGGTGATATAAATGGCTTAATACCGTGT
CAACATTCGAATGAGAGTCTATTGACAAATACAAATAGTGATGGGCTGTC
TTActtttgtcaatattttagTATGAACATGAAAgTTAACCACGGTAACA
AGCAACTCCTGGtcgatttttcatggaaatataAAAGATTTTCGAGCAAG
ATCAAATTCAGTTCTTACCGTCTACCCCAAGTAACCGATATCCATTTATC
ATGTCAAGGGTGTTCCGTAAAAAAATGGATCATTTATAATGCGGTGCTAG
TTGATAAAACCGGACATCGCCGGAAAATGGTTTTCAATGTTAGTTTAAGT
TCAAAGACGAGACATATAGATTGCAAGTTTCGGATGGGAAGTCATTTTTC
GGACAACCTTTGTATCGGACAAGTGAAGGGCGTGGCCACAGTACCTGTTC
ACAAAAATGAACTCAATTTAATAGAGAGAATGGACGATGCGACACGATAC
AAAATCATTGCAGN

Run BLAST on NCBI

transcript from alignment at scaffold_311:1306598..1317223+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058503 ID=TCONS_00058503|Name=TCONS_00058503|organism=Clytia hemisphaerica|type=transcript|length=10626bp|location=Sequence derived from alignment at scaffold_311:1306598..1317223+ (Clytia hemisphaerica)
TGAACCATTCTCTTTgttctgtgtgtcactttcacTCACATTTGGCGTTG
GATTGTGTTCGCAAATTACAACTGGTGATATAAATGGCTTAATACCGTGT
CAACATTCGAATGAGAGTCTATTGACAAATACAAATAGTGATGGGCTGTC
TTActtttgtcaatattttagTATGAACATGAAAGTAAGtaggaacattt
ttctttatttattctatgtgtgtttttcaaatCTTATTGAGATCAGAATT
GGCAGTTTTGGCCACCATTAGCCTGCGTTTTAGGCGTTTTTCAATTGTAT
AGGACAACTTTGGTTTGAAATTCTTCAGTTTTCCAAATAGTTAGATCAGC
TGATTCAGTCCTTCAGGCTATGGCTGAATCCTTTCCTACCCGACCACCct
tttgacaaattttcgaATTCCAAATTCACTCTCGAATTATCCTAAATGTA
TGCATGTGTGAGTGTAGATCCTCACCCCTAAAATTTCTGGACACAGTCAc
tatataatttttgtttttctaggTTAACCACGGTAACAAGCAACTCCTGG
tcgatttttcatggaaatataAAAGATTTTCGAGCAAGATCAAATTCAGT
TCTTACCGTCTACCCCAAGTAACCGATATCCATTTATCATGTCAAGGGTG
TTCCGTAAAAAAATGGATCATTTATAATGCGGTGCTAGTTGATAAAACCG
GACATCGCCGGAAAATGGTTTTCAATGTTAGTTTAAGTTCAAAGACGAGA
CATATAGATTGCAAGTTTCGGATGGGAAGTCATTTTTCGGACAACCTTTG
TATCGGACAAGTGAAGGGCGTGGCCACAGTACCTGTTCACAAAAATGAAC
TCAATTTAATAGGTAATGATAatacttattttttataagaacataaaggc
ttcgatggccaaaatgttaagaaaatctTAAGCACATTATAAAGCTTTGT
GGACTTTAGAACAccgaatttcttaggaaaatggacaaagatactcaaag
aatgacaaaaataagaacatttttaggcttaaaactcaaaaagtcaagat
catcccaaaggcttcaaaaattttggatgttcttataaaaaaagtggatt
tttgctATTTTGCTCCGAATAGTAAAGGTACTTTTGAATGTACTTTTTGA
ACTGCAGATCCTTTTTTTAAAACATgaactcttttttataagaacagttt
taTAAAAACGACGAGGCTCAAGatcgtcaaaaaataagaactatTTGAGA
GCAATGCTGGctggaattaaaaaattttaagcgcttaaggtggtagtcta
ccgagaaatggaaaatcatcgaaaaaattgtcgaattttggtttttgggt
gttttgagatccttaggtctttctgaacatctcctgGAAATNNNNNNNNN
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tgaaaatttcattacgaaatgtaaagaagttcttgagttattgcaaaaaa
tgtgattttttgacttttgaaatctggcggtagactaccaccttaaccCT
TAAAGGTAGCCTAGAAATCtgagctagtttgattcagcctaggataaatc
tgatggtaagttgtgactgaaaaacagtattccaaggcaaacttaaaacc
cgtaaatataaaaaagatctttaaagcgccgaaaacgctatattgccttA
TGCCTTAGCCTAGGCTGCAGCcttagccttgtgaatacgggcttagttaa
ctaggctaccttaaaggtttcatttttacataagtgttcccgtttcatat
caggacagtgtctgcctattgttattgTGCTGTGAAATAATactgttttt
tcttttccttattctgacaaatcttgctccacagttgtgtcaattcaata
tgaaaagcttgtaaattaaaattgatgagtaagcaaacgacatcactctt
attaaaaaacaaaacctttaatacctttattttgttcaaaaaataagaat
aatttgaacctcaaagtgccaaaaaaataaggttTCCTGAAACTCTGATT
TCACCATTTATTGCGAAGATTCACCAAAGTTAGAATTTAGCAGATTCATA
CAAGACTGGCAAAAAGACAATGACTAGAAAAACCAAAGACgtctgaaaat
aaatacttgACATGACAGATTTTTAAGATAGTAACCTTTCTTTGAAATTA
AAACCGACATGTGCCTCAAAGTGGTAGATATAATTCTTGAAGAAATAACT
TATTGTCTAAAAAGGATAGCAGGAGATGCAGGAATTGctgcttagaattt
cttttaccAAAATTGCCCATGCCTAGCACCCTTCTATTTTTGAGATTTGT
AAAGAAAACGCATCTGCACTATCATGTTAAGCCTTTTAGCAAATACCAAA
AGttagtttttgctgattttaattcgaggtcaaattaaattttatggTTG
ATATATGTAGTCTTTGGATTTAGAAATTGTATGTTTCGAAGGGTAGGTTG
TACATAATTTGTGTACTGCAGATGTATCTTGACTATACTGAATTTGGCAC
GTCTGTAGAAAGCGTAACAAATGTTTTTAATAAGAGCGTGAAATTGATGA
ATACttaaagcccggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNCCCCCCctccatgtacggacattttcttgAAGAGCCCAATCT
TACCATCGTGTATTGAAGTTACCGGGGTTGAGCAAAGGAAACCTGTTCTC
TTGAATACCAGTTATCCTTaacattttaaatttattcGATAAACTTGATC
AGGGTTTATTTTCtttccattttattttgttttgcttcTCTAATAGCTTA
ACTTTTTGTACAGCAGATCTAACTTTATTTAGTATATAATTTTGTCTCGA
ATCTAAGCAATTTGCGATATGCATCAATGCAATgttttctgacattacat
cacggacccaacagctgattggttgtaaaatTATGTGAAaccagtcaata
cgtcactttcaaccaatcagctgttgggtccgtcgAAGACATTGCAACGG
TGCATATCCTGAATACCTTTGAAACATTAATTTCGTGGGTCACTCGGTCT
CTTTTAAGAGAAGGGGAtcaacatttttaatttgattatcCTACAGAATT
AAAACGCATTAAGTCGAAACAAAAAATCTAGAGTATGAGAAAGTAAGAAA
GCTTAAGATAAGGGAGGCATCGTGCACGAGTTATTCTTTTATAAGATTTG
ACCAAAGTatgcgtttttttataagtacacctaaaaatgttcttaacatg
ttcttattttcaccattttgtgagcatttttgtccatttttctaagaaat
cgagtgttttagagtccccaaagccttaaatgttcttaacttgttcttaa
cattttggccatcgaagccttatcttcttaaatagtttgttcttataaaa
aacgtatatgaCAGCTCCCCAGGGGCGGGGGTGGGTAACAGGGTTGCAAG
CAGACGGGAATCTTTGTGAATTCTAAAAGCCTTGTTGGGACTAATTTGGC
CACATTTCAACCTTTCAAGGagtaaaacattttcttttaattccGACCAG
TATTATTAAGGCTGTGATTTAATTTTCTGCTTATTTCTCAAACTGGGACT
ATCAGGATTCCAACTTAGCCCCTCCTGGTGGACTGTATATAATTTGCTTT
GAGGCAAGTTTAGAAGTGCTAATTTGACGAATGTTATAAGAAGCTCGAAC
GGTCCAGCATTGGTATAAACCGCGCGGACCGTAAGTCATGTAGGACATAA
CTGTCAAATCTTATGTAGAAGATTATATCCTAGCCCTTAGGGCTTTGAAT
ACATCAtttcgaccgtagctgccaattgctgtgcgggcatttttttgtcc
gttttactgtcctaaaaccgtcccagtcttgtttttgcacctaaagacaa
tagaaaaaagtgtaaaagaagggttggatcgagtttagggtggttaaata
aataataaagtggcactcGCCTGAttgcgcgactacggtcgaaaaggtat
aTTCATTTTGTGCAACCTGACTACCAGTCACTTGCAGGACAGTGaaagtt
ttattataagcatacTCTATTCTTAGTTTTGCACTTGTTCTTTTCTTATA
GAACAATAGAGGAATATGCTGAACTACTAAAAGCTTTTAATACCTAGATA
AATAAAGTTATGTCTACTAAATAAGACCTCCATAAATTTACAAAAGCGAT
ACAGATTTACAATATGATATATTTTGACAATGTGATACAGATTTACAGTG
ACATATTTTGATATTGTGGTAATTGAATTTAAATAACATTCAATGATaat
ccagctggcacacaacgttgttttaacgttcatgaacgttatatggacgt
tgtgaacgttagataaacgttgaaacaacgctgtgtaccagctgggaagg
agcattttttgatgtctgaaaatttattttacaaatgccttgaaaaaaaa
tcttgaacgTTTTAAAAGAAATTGGTACTAAAATTGGATGACAATTTTAA
CGACTCTTCAAGGAATTGGTACTAGGATTTGTTCAGATAAACAGGGAAga
atattttgattgattttaattGGTTACGAAGAAGATAGGAAGCATGGACC
CCAGTACTCGTTCTGATGGTAATTTGACCAACACTTTTAAGTCATCTTAA
TTCGAATTCTAACGGGTGGGGCGTTGGTTATTAATTGAGCTACAGAGAGT
TTGAGTTCTAAAGGGACCAGAAAAATCGATCGCTGGTGTTGCGGCTGCTC
GAGTGATGGAGAGATGCGTTCATTAGAGACTCTAAAAGGAGTTTGAGTTA
CTGCAACTCCGGGGGGTGTGAGCCAtaaagggtccctttttcacaacctc
gaaagtctctcaaaaaccattaaaaagcaaattgagtcgcaaaattcacg
aaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTCcgattaaaaaaa
tctaaaatttaatttcgatttaaaaaatttaaaaatcgagtgaatatcga
taaaatttttgaaaaaagtctctctaagggtcccaaaaacgcaAATCTTt
gctctctctaagggtcaattttcgatttttgcctCGCAAACATAGTTTCT
TCCCAAATACCACGTCACATGATAGCATTTTTAAAATCCCTAAAAATTTT
ATCGTTCAGAAggtaaagttttcttttaaaagtcaaCTGTACTGTTGACT
TTCTCTTAATCGATCGCCAATTGAATAtcatgggataaactttcgcggtt
aGGCCtatatccgcgaaattcaaaaatttcgcggggacttaatttcgcgg
gtggcactattgggtggcaatattttcacgatgtTGTggcttttactgtc
aaatcatgcatgttggttgttgaattACACATTAtgtgcgcttctttgat
gcaaatAAACATTGGTatatttatttgacattttttgtttgagttttgtt
tagaaatatttcgcggatgaggcccttccaaatttccactGGGACTTAAC
TTCGCGGGTTTTCGCGGATGACAgccaatccgcgaaatccgcgaaattta
atccccgcgaaagtttatcccattaaagtaagaTTCTAATTACATAGACT
ATTTTATACTATACTTTTCAGCCGAGGGACCCATATTccagttcgaatta
tagagagattgGAATAGTAGaagctcgaattagagagagctgaCAGTATT
TTCATCATCTTTATAATTGGGCATCAACAGACTTATTGCCTTATTtactg
ttttttatttaaaagtaaatttttctaagatttcTTCNgggggggggggg
ggggggtgtgagCCAtaaagggtccctttttcacaacctcgaaagtctct
caaaggggtacaaaaaccattaaaaagcaaattgagtctcaaaattcacg
aaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTccgattaaaaaat
ttaaaaatcgagtgaatatcgataaaatttttgaaaaaagtctctataag
ggtcccaaaaacgcaAATCTTtgctctctctaagggtcaattttcgattt
ttgtctCGCAAACATAGTTTCTTCCCAAATACCACGTCACATGATAGCAT
TTTTAAAATCCCTAAAAATTTTATCGTTCAGAaggtaaagttttttttaa
aaagtcaaCTGTACTGTTGAGTCTCTCTTAATCGATCGCCAATTGAATTA
GAATAAGATTCGAATTACATAGACTATTTTATACTATACTTTCCAGCCGA
GGGACCAATATTccagttcgaattatagagagattgGAATAGTAGaagct
cgaattagagagagttgacagTATTTTAATCATCTTTATAATTGGGCATC
AACAGACTTATTGGCTTATTTActgtttttcatttaaaagttaatttttc
taAGATTTCTTCTCAActtattttagtttttcttctattttgataaaatt
agaaAGATATTCATATCTGCACAAGAAAATAATTCGCTACAATTTGGAGT
GAGATAGacaaaaaaattaggaaaggaTCTATAGGGAAAATCTCGAAAAG
ACTGTAACAGTTTTTGAAGAAGataatttttcactttctttttcaatatC
TTGAGTTCTGGcaggtgattttttttctctattttctgTCTTAAAAACTG
TAAtctactttttcactttttcagcCTATACATTATTTCTATTTTCTCCT
TTCCTTGTTTTATCTACCTCATTTTCTTGCTAATGTCAAACCTTTTGACT
TTTTAAGCCTATTTAAGTTTTTGTCATATCTTTCTTCCTCGATAGTTCGT
GATAGATTTTGCTGTGTTTCACTCATTTCACTCACACTGATGAAGTTTTC
AATAACACAAATCATTGAAACAGCCCAGCCTGCAcgtaacgttgtttcaa
cgtccatcaatgttcacaacgtctatataacgttagataaacgttgaaac
aacgttgtgtgtcagctgggaacgTATTTCTAACTTCCGATGTACGTTAT
TGCAACGTGTTTccgacattacatcatggacccaacaacttgattggttg
caagtgacgtattcatgatatgtaccattgcaatgtcttccacggaccga
acagctgattggttgaaagtgacgttgATTTTACCCAAacagctgttggg
tctgtggtgtaatatcagaagacattgcaatggtgcatatcatgaattgc
ctGATtctacgtcacttacaaccaatcagctgatGGTTCTATGGATGTAA
TGTAGCAAGACGCAACAAATCTAGGAGAATCTGAAGTTTTAGACCAAAAG
AATACGGCTTGATTTTATGCTTTATGATTGAGATATTCTAAGTATTAGCC
GTCAAGTAATAATTtctaatttattatttttctcagAGAGAATGGACGAT
GCGACACGATACAAAATCATTGCAGN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036858	XLOC_036858	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058503-exon-scaffold_311-1491911889:1306598..1306781	TCONS_00058503-exon-scaffold_311-1491911889:1306598..1306781	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1510915933:1306598..1306781	TCONS_00058503-exon-scaffold_311-1510915933:1306598..1306781	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1575043694:1306598..1306781	TCONS_00058503-exon-scaffold_311-1575043694:1306598..1306781	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1491911889:1307120..1307459	TCONS_00058503-exon-scaffold_311-1491911889:1307120..1307459	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1510915933:1307120..1307459	TCONS_00058503-exon-scaffold_311-1510915933:1307120..1307459	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1575043694:1307120..1307459	TCONS_00058503-exon-scaffold_311-1575043694:1307120..1307459	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1491911889:1317184..1317223	TCONS_00058503-exon-scaffold_311-1491911889:1317184..1317223	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1510915933:1317184..1317223	TCONS_00058503-exon-scaffold_311-1510915933:1317184..1317223	Clytia hemisphaerica	exon
TCONS_00058503-exon-scaffold_311-1575043694:1317184..1317223	TCONS_00058503-exon-scaffold_311-1575043694:1317184..1317223	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:1306598..1317223 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.134771	0	0.128485	0	0	0.104314	0	0.0665577	1.20303	1.50996	1.91956	0.496329	0.42905	0.917409	1.87575	4.23429	0	0.282782	1.27345	1.12844	3.43446	1.37966	0.274068	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058503 vs. Swiss-Prot (Human)

BLAST of TCONS_00058503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058503 (transcript) - C. hemisphaerica