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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058552 ID=TCONS_00058552|Name=TCONS_00058552|organism=Clytia hemisphaerica|type=transcript|length=2253bp
ACCAGGAAACAGCCTGGTAGTttggaatttttaatttttaaaagtcaTAG
ATTTGCTGAAAAATGAGTAACTGTGCAACAATAAACAACCAATCACAGac
gtttatcaaagaagaagagCCAATGGGAATCGCAGGAAAACTCGAAAACA
AAAGCGTCCACATTCACCAAGATGGCGGATTGAGTCATGTGATACATTTC
AATGATGGTACAACAACACGGACACCGAAATGTGCTCGATGTCGAAATCA
TGGCCTTGACCGAGAATTGAAAGGACATAAAGAGAAATGTGAATTCAAAG
ATTGCACATGCCGCTCATGCTTAGTTGTTGTTGAACGTCAAAAGATCACG
GCCGCCCGTGTGGCTCATCTACGCCAACAACGTAAAGTGGCCGCCAAACG
TGGGGTCGCTATTCCCAACCATAAATACTCACATTATAACCCGTTGACGG
AGGAAGAAGAGTATATCTTATCTTCACCCTTGCAAAAGAAAACCACAAGT
GGAAAAATATCGCCAACCTATCACCAAGgTCATCATGTCACTAACCGGTA
TTATCACCATAAACCAACATGGACTTCTTACCAACCACCAACCCTCGCCA
AAAACGGATCTCATCCTCCCTATCCTTCCCCACCACGGAGAGGGGAGTAC
CCACACCACCACCATCATCATCAGCCCAATGTAGACAAACCAGGTCCAAT
CAGATACCACCATTCTCCTGTCTATCACTATCAACCCTACCCTGTGGCAA
GGTACTTTCCCTACCATCAGCCACACTACCAGCATACTTCATGTCATTCC
CCACCTAGGGACTCTATGAGATCATCACCTGCATCTCTCCCTGGAAGTTA
CATCGTCCCTTCCCCTCCTTCCATACATGATCGAAGAGACGTCTTCAGGC
CGATTGTAATCGACCCACGGCGTGACGATGCCAGCGAATCAgaagatgat
gacgtcattgatgtAGTCATGGAAACAAGAAATAAAGATGGTCGTCATGG
TAACTCTAAACAAAGAGATGACAAGAAAATAGAAGCTCTGAGAGTGATGT
TTCCAGATTTAGACATGCGCTCGTTACACGATCTCTATGAGGATTTTGAC
CAGGATGTCCAGGCGGCTGTTGAATATATGTTATTCAAAAAGCGTAAAAA
CGAACAAGAGGAATTCAAACTGAACAATCAGCAGCAATCATCAATCCTCA
CCACAACAGATTCTAAGAGAAGTTTAATACATTCTCCAAAAACAACTACT
TCATCTAACAACAAACCATATTATATTGACTCTCTAATCAGTAAATGTCA
ACCTAAAGACAACTCTGATACAAATATGAAAAGCAAAATATCAATTTCTT
CGACTGCGTAAAATCATTTACAGTAAAtagataattttttataatataaA
GAATATTGTATAAAAATTCTTGTTATCCTTGTAAATACTTTAAATAATAC
ACCATTAAATTGACGAAATGGGTTCTTCCAGAAAATctttgtacatgggg
ggtggaggatatgtatggtggggtggaggatatattggatattttgtccg
ggggcaatggaaaatctgcaaaatttgccttgttttgggGACGAACTTGC
TCTGATTAGGGGTAATTTTGATTATCttggggggtcaactgatgcttatc
cggggggtcaaaattaacaatgtccgggggtaaatgtgcaaaaaatatta
tatcctccaccccacataatatatttttttctgaaagagcccAATACCTG
AGGGAACTAGGCTCAGTTCACTTTACCATGTAGGGTTGATTGAGATTTGT
GGCATACATTTATCCTACGGTACAGTTAGAATTGAGAAGGCTCCTCTGGA
CTGGACTATTTTCATCAAAGCTTAAATAAATCAACCTGCTAATTCGAACT
GGAACGAGAAGTCGAATTACAGAACGACTCGAATTTATGGAAAACATTGT
ACTAGGGTTTCCCTTAGACCTAAATCAATTCTAGAAAGATTCAGATTAAC
TCGAGAGTTCACTACACTTAGCATCGCCCTTTTTGTGGAAGTTCCCTCAT
AGCCCTCTCCACATTGTAAAGGTTTTATGGaaaatttctctctttaaaat
ttAACGTAAATATCAAACGTCATACTTGGGAATAGACCATGTTATTATAT
TTCTATGCCTTTCGGGAAATATAATTCGATATTTTCTGAAACTAATGCAA
ATAGttatattattttaatgtaaataAGATATATAATAAATCATGACAAA
AAC Run BLAST on NCBI transcript from alignment at scaffold_311:900798..905072- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058552 ID=TCONS_00058552|Name=TCONS_00058552|organism=Clytia hemisphaerica|type=transcript|length=4275bp|location=Sequence derived from alignment at scaffold_311:900798..905072- (Clytia hemisphaerica)
ACCAGGAAACAGCCTGGTAGTTTGGAATTTTTAATTTTTAAAAGTCATAG
ATTTGCTGAAAAATGAGGTATGATTTAAATTTGATATTCTTTTTTTAACG
GAAAGGTTTTAACTCTAAAAATACATTAACAGAGGTTTTGCTTTGTTTTT
GGTAGGCTGGCGAATGAAAAATTAACTCTTTTTCTAAAATTTTTCTAGAT
TCTAAGCCGGCGAATTCTTAGCAAGCGTAATGTGTTGATTCGCGTAAATA
TGTACTTGAGGCGGTGAACGGAACTTTTTGAACGGCGAATTGTAATTTTT
TTCGTGCCTTGGACCGGCGAAATTCACCGTTCGCCGGGCCTAAATAATAC
CCTTGCACAAAAAAAAGTCTCCGCTAACCAAGAAACTTTGGTAGTGATAA
GGATTAGCAGTATTTGTAGTATATAGGCTTGTCTCACAGCCACGATGGAA
CTTCTTCTCACAGTGGGGGAATTGAAATTTTATCAAAATCCCAATGAGGA
TGGAAATTCTATTGTTCCCAAGGTTAACAAATCCATTGGGGATGGTTTTG
GAATACAATTTTTCCATTGAATTTCAAATGAAGATAAAGAAAAACTCCCA
GAATTTCCCAGTAGGGCTGATATCGTGGAGTGTTTTTCCCACCTGAGACG
AATTTTGATCAAATTTTCCAGTAGAGCGAGAGTTCCACCGGGTCTGTGAC
ACAGCACTATTTTTCGTGAATTTCTATATTGCTTCTATATTTTGACCAGA
TAATGTTAAAGGTGGCTTCGATTGATTCTTTCCACATTATTTGAAATTGC
ATTCCGTTTTCCTGGAAGTCTTGAATCGTCGGGCCTCTCATACAGGATTT
TTATCCCATTAATAGATCGTACGTAAGATGTGTACGTGACTGAATGTTTG
AGTAAGAATTTCAACATTTCTTCAATTCTGGGCTTAAATATTTACGAATA
CGGTTTTCTTTTTCGCAAATCGCGTGCTTCATACATTTGTTAATGACAAG
CTTATTATAAACAACGTCTTGTTGAATTCAACACTTTGACATAGTTTCTA
CAAACTTATTACACCGTAAGTCGAACCTCCAAAGATTTCGCTTTTGATTT
ATTTAAGATCCCTCATGCTTGTCATTTTGTTTACCCGGCATCATGATTTT
CAACGAAGTATAAAAAATTTAAGGTCATGCATCTTTTTCTCAGGGAATTA
CATCAGAGTATTTTGTTTGAAGTCAAGAATTTTGAAGATAACTTTCCGAT
AGATCAGTGAAAATGACCGAAAATACTTGGAAATCTTCTCATCTTTACCG
ACCTTGAAATTGAAAGGTATAAAGGAAGGTTAGGGAAGGCAAAGTCATTA
TTCGAACATGATAAAACAGTTGGCTCGTGTACAAATTTCACTCAATCTTT
TACCCAGAGCCAGAGTCACTAGCATATCATAATTTTTTTTTTATTTTTAC
AATGCTTGTGCGAGCACTATCAGAATAAAAAATGTGAGCAAAGGGACTAA
GCTCGAGTTTCAGTATTATTTCCTTGTATTGTATTGCCAAAAGGTACCTT
TTTGTACAAATTAAAAGTGGTCAAATTGGCTGTTATATAAAAATTACATC
GAAATCTTCTAATCTCTTTTATGCTTTTTTCTCTTCTTCAGTAACTGTGC
AACAATAAACAACCAATCACAGACGTTTATCAAAGAAGAAGAGCCAATGG
GAATCGCAGGAAAACTCGAAAACAAAAGCGTCCACATTCACCAAGATGGC
GGATTGAGTCATGTGATACATTTCAATGATGGTACAACAACACGGACACC
GAAATGTGCTCGATGTCGAAATCATGGCCTTGACCGAGAATTGAAAGGTA
CCCCTATTTTAGAAATTATTTTTACTGCGTCGTTTTATTTGAGCTTTTTG
AATTTTCAGAGATCCAAGAAAAAATGCCTAACGCGTTTGTAATTGCAAGC
TTCATTAGTTTATATAATCATAAAGACGTTAGACTTAAGACCTTGATTTT
TTTGTCGATGAAAATTCAAAAATCACGTCTTTGAATTCATTTTGAATTCA
TCTTTTTAGGACATAAAGAGAAATGTGAATTCAAAGATTGCACATGCCGC
TCATGCTTAGTTGTTGTTGAACGTCAAAAGATCACGGCCGCCCGTGTGGC
TCATCTACGCCAACAACGTAAAGTGGCCGCCAAACGTGGGGTCGCTATTC
CCAACCATAAATACTCACATTATAACCCGTTGACGGAGGAAGAAGAGTAT
ATCTTATCTTCACCCTTGCAAAAGAAAACCACAAGTGGAAAAATATCGCC
AACCTATCACCAAGGTAAATCCCCGAATGTTCTGATATGTTGTTTGAAGA
TGAGATTGAGATACAGTGTTTTAGAAATGAAAAAAATGTTTGATTATTTA
CCACTCGAAACTTGCAGTAAAATACTTATTATGATTTTTAAAATTTTTTG
CTATTAAGCACTTTGTTGACATAACTATTATTTGGGGCAACATTGGCTAA
TTTTCAGTAGCCATTATTTTCAATGTCCATTTTCATTTTCATTTTCTCAG
GTCATCATGTCACTAACCGGTATTATCACCATAAACCAACATGGACTTCT
TACCAACCACCAACCCTCGCCAAAAACGGATCTCATCCTCCCTATCCTTC
CCCACCACGGAGAGGGGAGTACCCACACCACCACCATCATCATCAGCCCA
ATGTAGACAAACCAGGTCCAATCAGATACCACCATTCTCCTGTCTATCAC
TATCAACCCTACCCTGTGGCAAGGTACTTTCCCTACCATCAGCCACACTA
CCAGCATACTTCATGTCATTCCCCACCTAGGGACTCTATGAGATCATCAC
CTGCATCTCTCCCTGGAAGTTACATCGTCCCTTCCCCTCCTTCCATACAT
GATCGAAGAGACGTCTTCAGGCCGATTGTAATCGACCCACGGCGTGACGA
TGCCAGCGAATCAGAAGATGATGACGTCATTGATGTAGTCATGGAAACAA
GAAATAAAGATGGTCGTCATGGTAACTCTAAACAAAGAGATGACAAGAAA
ATAGAAGCTCTGAGAGTGATGTTTCCAGATTTAGACATGCGCTCGTTACA
CGATCTCTATGAGGATTTTGACCAGGATGTCCAGGCGGCTGTTGAATATA
TGTTATTCAAAAAGCGTAAAAACGAACAAGAGGAATTCAAACTGAACAAT
CAGCAGCAATCATCAATCCTCACCACAACAGATTCTAAGAGAAGTTTAAT
ACATTCTCCAAAAACAACTACTTCATCTAACAACAAACCATATTATATTG
ACTCTCTAATCAGTAAATGTCAACCTAAAGACAACTCTGATACAAATATG
AAAAGCAAAATATCAATTTCTTCGACTGCGTAAAATCATTTACAGTAAAT
AGATAATTTTTTATAATATAAAGAATATTGTATAAAAATTCTTGTTATCC
TTGTAAATACTTTAAATAATACACCATTAAATTGACGAAATGGGTTCTTC
CAGAAAATCTTTGTACATGGGGGGTGGAGGATATGTATGGTGGGGTGGAG
GATATATTGGATATTTTGTCCGGGGGCAATGGAAAATCTGCAAAATTTGC
CTTGTTTTGGGGACGAACTTGCTCTGATTAGGGGTAATTTTGATTATCTT
GGGGGGTCAACTGATGCTTATCCGGGGGGTCAAAATTAACAATGTCCGGG
GGTAAATGTGCAAAAAATATTATATCCTCCACCCCACATAATATATTTTT
TTCTGAAAGAGCCCAATACCTGAGGGAACTAGGCTCAGTTCACTTTACCA
TGTAGGGTTGATTGAGATTTGTGGCATACATTTATCCTACGGTACAGTTA
GAATTGAGAAGGCTCCTCTGGACTGGACTATTTTCATCAAAGCTTAAATA
AATCAACCTGCTAATTCGAACTGGAACGAGAAGTCGAATTACAGAACGAC
TCGAATTTATGGAAAACATTGTACTAGGGTTTCCCTTAGACCTAAATCAA
TTCTAGAAAGATTCAGATTAACTCGAGAGTTCACTACACTTAGCATCGCC
CTTTTTGTGGAAGTTCCCTCATAGCCCTCTCCACATTGTAAAGGTTTTAT
GGAAAATTTCTCTCTTTAAAATTTAACGTAAATATCAAACGTCATACTTG
GGAATAGACCATGTTATTATATTTCTATGCCTTTCGGGAAATATAATTCG
ATATTTTCTGAAACTAATGCAAATAGTTATATTATTTTAATGTAAATAAG
ATATATAATAAATCATGACAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058552-exon-scaffold_311-1575043694:905006..905072 | TCONS_00058552-exon-scaffold_311-1575043694:905006..905072 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1575043694:903226..903431 | TCONS_00058552-exon-scaffold_311-1575043694:903226..903431 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1575043694:902759..903013 | TCONS_00058552-exon-scaffold_311-1575043694:902759..903013 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1575043694:900798..902522 | TCONS_00058552-exon-scaffold_311-1575043694:900798..902522 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1510915933:905006..905072 | TCONS_00058552-exon-scaffold_311-1510915933:905006..905072 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1510915933:903226..903431 | TCONS_00058552-exon-scaffold_311-1510915933:903226..903431 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1510915933:902759..903013 | TCONS_00058552-exon-scaffold_311-1510915933:902759..903013 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1510915933:900798..902522 | TCONS_00058552-exon-scaffold_311-1510915933:900798..902522 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1491911889:905006..905072 | TCONS_00058552-exon-scaffold_311-1491911889:905006..905072 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1491911889:903226..903431 | TCONS_00058552-exon-scaffold_311-1491911889:903226..903431 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1491911889:902759..903013 | TCONS_00058552-exon-scaffold_311-1491911889:902759..903013 | Clytia hemisphaerica | exon |
| TCONS_00058552-exon-scaffold_311-1491911889:900798..902522 | TCONS_00058552-exon-scaffold_311-1491911889:900798..902522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:900798..905072 - |
Blast
BLAST of TCONS_00058552 vs. Swiss-Prot (Human)
Match: DMRT3 (Doublesex- and mab-3-related transcription factor 3 OS=Homo sapiens GN=DMRT3 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-17 Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query: 219 RTPKCARCRNHGLDRELKGHKEKCEFKDCTCRSCLVVVERQKITAARVAHLRQQ 380
RTPKCARCRNHG+ LKGHK C FKDCTC C++++ERQ++ AA+VA RQQ
Sbjct: 25 RTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQRVMAAQVALRRQQ 78
The following BLAST results are available for this feature:
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