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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058609 ID=TCONS_00058609|Name=TCONS_00058609|organism=Clytia hemisphaerica|type=transcript|length=974bp
TCCATGATCCATTTAAAACGAATTCTGGTCTTTTATTGACCAAAGACCTT
GAAATATCTTCATACCAGTTTTTGTAAGAAACAAAAGGATTAGGCTGAcc
agaaaaaaagttaacaatACCGTAGACAAGCCTTTGTACTTTCGGTTCAA
GATTATTTTGTTGTGCATTTCTCGTAATCGCTTGTCCCTTATTTTCTTCA
GTTGCGTTCTCATTTGTGGATTGCTTTTTCGATTTCATCATTTCATTTTC
GTGGCGCAGTGCTTGAATCTCTAACTCCTTTTCTTTCTCCAAATCCTTGA
CTTTAAGTTTAAACTCGTTTTCTTTAGCAGCAATTTGGTTCCTCATTTCA
GCAAGCTTGGTTTGGTACTCGTGCTCTTTTGCCAGAGTTGCTTTCTCCAT
TtcattgattttcattttggattcattttgcttggcagCAATCTCCTTGT
CTTTTGCAACCAGCTCCTTGTCTTTCTCAGCCAGTTTGTTCTGAAACTCT
TTCTGCTGTTTCAGCATTTCTTTCTCCATTTCACGATCAACCACACCACC
CTTAGGCTCCATCTTATGGGCGGCCTTCAACTTGACCAGCTCAAGTTCAT
GACTCAACGATTGATTGTCCTTTTCAAGCTGcaaaatcttcatcttttgC
TCTTTATCCTGTTTGGACATTTCTTTCTCCAGCTCCAGGGTTTTGATacg
attttcaaaagtcaatttttgaatCTGCTTGTCATGGTCTTCCTTAAGTT
TTGTAATTTCTACGCTATCTGTTTTTTTGGTGACAATTCTACCAGCAGCA
CTATGTGCCAAGTTGCGTTCATCACGATGTGCAGAATCCATTTTAAGTTT
CTGATAAAAAGACACACAACTGAGAAACTCGTATAAGATAACAAGTACTT
CTATTGGAATCTGTAATCGCTTAAACTTGAAAACCTTGTCTTGTTTTGAT
ATCAAGGATGTTTATATAGTTATA Run BLAST on NCBI protein sequence of TCONS_00058609-protein >TCONS_00058609-protein ID=TCONS_00058609-protein|Name=TCONS_00058609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MDSAHRDERNLAHSAAGRIVTKKTDSVEITKLKEDHDKQIQKLTFENRIK
TLELEKEMSKQDKEQKMKILQLEKDNQSLSHELELVKLKAAHKMEPKGGV
VDREMEKEMLKQQKEFQNKLAEKDKELVAKDKEIAAKQNESKMKINEMEK
ATLAKEHEYQTKLAEMRNQIAAKENEFKLKVKDLEKEKELEIQALRHENE
MMKSKKQSTNENATEENKGQAITRNAQQNNLEPKVQRLVYGIVNFFSGQP
NPFVSYKNWYEDISRSLVNKRPEFVLNGSW Run BLAST on NCBI transcript from alignment at scaffold_311:559789..560762 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058609 ID=TCONS_00058609|Name=TCONS_00058609|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at scaffold_311:559789..560762 (Clytia hemisphaerica)
TATAACTATATAAACATCCTTGATATCAAAACAAGACAAGGTTTTCAAGT
TTAAGCGATTACAGATTCCAATAGAAGTACTTGTTATCTTATACGAGTTT
CTCAGTTGTGTGTCTTTTTATCAGAAACTTAAAATGGATTCTGCACATCG
TGATGAACGCAACTTGGCACATAGTGCTGCTGGTAGAATTGTCACCAAAA
AAACAGATAGCGTAGAAATTACAAAACTTAAGGAAGACCATGACAAGCAG
attcaaaaattgacttttgaaaatcgtATCAAAACCCTGGAGCTGGAGAA
AGAAATGTCCAAACAGGATAAAGAGcaaaagatgaagattttgCAGCTTG
AAAAGGACAATCAATCGTTGAGTCATGAACTTGAGCTGGTCAAGTTGAAG
GCCGCCCATAAGATGGAGCCTAAGGGTGGTGTGGTTGATCGTGAAATGGA
GAAAGAAATGCTGAAACAGCAGAAAGAGTTTCAGAACAAACTGGCTGAGA
AAGACAAGGAGCTGGTTGCAAAAGACAAGGAGATTGctgccaagcaaaat
gaatccaaaatgaaaatcaatgaAATGGAGAAAGCAACTCTGGCAAAAGA
GCACGAGTACCAAACCAAGCTTGCTGAAATGAGGAACCAAATTGCTGCTA
AAGAAAACGAGTTTAAACTTAAAGTCAAGGATTTGGAGAAAGAAAAGGAG
TTAGAGATTCAAGCACTGCGCCACGAAAATGAAATGATGAAATCGAAAAA
GCAATCCACAAATGAGAACGCAACTGAAGAAAATAAGGGACAAGCGATTA
CGAGAAATGCACAACAAAATAATCTTGAACCGAAAGTACAAAGGCTTGTC
TACGGTattgttaactttttttctggTCAGCCTAATCCTTTTGTTTCTTA
CAAAAACTGGTATGAAGATATTTCAAGGTCTTTGGTCAATAAAAGACCAG
AATTCGTTTTAAATGGATCATGGA Coding sequence (CDS) from alignment at scaffold_311:559789..560762 >TCONS_00058609 ID=TCONS_00058609|Name=TCONS_00058609|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_311:559789..560762 (Clytia hemisphaerica)
ATGGATTCTGCACATCGTGATGAACGCAACTTGGCACATAGTGCTGCTGG
TAGAATTGTCACCAAAAAAACAGATAGCGTAGAAATTACAAAACTTAAGG
AAGACCATGACAAGCAGattcaaaaattgacttttgaaaatcgtATCAAA
ACCCTGGAGCTGGAGAAAGAAATGTCCAAACAGGATAAAGAGcaaaagat
gaagattttgCAGCTTGAAAAGGACAATCAATCGTTGAGTCATGAACTTG
AGCTGGTCAAGTTGAAGGCCGCCCATAAGATGGAGCCTAAGGGTGGTGTG
GTTGATCGTGAAATGGAGAAAGAAATGCTGAAACAGCAGAAAGAGTTTCA
GAACAAACTGGCTGAGAAAGACAAGGAGCTGGTTGCAAAAGACAAGGAGA
TTGctgccaagcaaaatgaatccaaaatgaaaatcaatgaAATGGAGAAA
GCAACTCTGGCAAAAGAGCACGAGTACCAAACCAAGCTTGCTGAAATGAG
GAACCAAATTGCTGCTAAAGAAAACGAGTTTAAACTTAAAGTCAAGGATT
TGGAGAAAGAAAAGGAGTTAGAGATTCAAGCACTGCGCCACGAAAATGAA
ATGATGAAATCGAAAAAGCAATCCACAAATGAGAACGCAACTGAAGAAAA
TAAGGGACAAGCGATTACGAGAAATGCACAACAAAATAATCTTGAACCGA
AAGTACAAAGGCTTGTCTACGGTattgttaactttttttctggTCAGCCT
AATCCTTTTGTTTCTTACAAAAACTGGTATGAAGATATTTCAAGGTCTTT
GGTCAATAAAAGACCAGAATTCGTTTTAAATGGATCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058609-exon-scaffold_311-1491911889:559789..560762 | TCONS_00058609-exon-scaffold_311-1491911889:559789..560762 | Clytia hemisphaerica | exon |
| TCONS_00058609-exon-scaffold_311-1510915933:559789..560762 | TCONS_00058609-exon-scaffold_311-1510915933:559789..560762 | Clytia hemisphaerica | exon |
| TCONS_00058609-exon-scaffold_311-1575043694:559789..560762 | TCONS_00058609-exon-scaffold_311-1575043694:559789..560762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:559789..560762 . |
Blast
The following BLAST results are available for this feature:
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