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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058439 ID=TCONS_00058439|Name=TCONS_00058439|organism=Clytia hemisphaerica|type=transcript|length=446bp
TTTGTGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGCTTTTTGCTT
TTTCGCCACAAAACACCACCGACTTGCACTCTTATTGATGGACCAATCGA
TCGAAGATATATGATCAAAAATTCAACCGTCGACTATTATGAAGTCTGGC
GACATCAGCAGCGACGTCGGAACCTGCAACTACGACGCCGAAACCTGTAA
CTACGACATCGACGTTCGTTTTAACAACACCTGCAGAGCCTTTAGGGACT
TTTGCGCGAGAAAATTCAAATCCAGCCTTCACATATGCCAAGATACCAGA
TGATTGGCAGTTATCAATTGGGGTGGAGATTGAAGGTCAAATTATGGAAA
ACAGTGGTGAACCCATAAGTCTCATCCACTTGGTGTACGGTGACAACCCG
TCCAATAAAcatgttttatttactttggttTATAACAAACATTTAG Run BLAST on NCBI transcript from alignment at scaffold_311:244181..251552+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058439 ID=TCONS_00058439|Name=TCONS_00058439|organism=Clytia hemisphaerica|type=transcript|length=7372bp|location=Sequence derived from alignment at scaffold_311:244181..251552+ (Clytia hemisphaerica)
TTTGTGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGCTTTTTGCTT
TTTCGCCACAAAACACCACCGACTTGCACTCTTATTGATGGACCAATCGA
TCGAAGATATATGATCAAAAATTCAACCGTCGACTATTATGAAGTCTGGG
TAAGTTACcctatcggggaaaaaaattttggagttttatttagtcaggGT
TTTTTTTTCGCCGGAGAAAAATTTCGTTACCTacaggcattttcgtcact
tttccccgacgaaatttacaatttggtCACTCTCAtccaactaaattgtc
caaatgaaatggtttcctgcACTAGCTTCGAAAATAGATTTTGTAATTTG
ACgtttaataaaggtgtaaaacaTTTAGattttaaagtctgttcacgata
agtgtgcactcttttttcttttaactataacttttgaaggaattcttcaa
tttttataaatttggtatcattggaaagatattagtgagtggatcaattt
gaaataaacaagtctttaaacaaattctaaaaacgaagatgaaagTGAAG
AAGAAAAAAATGAAGATCTTGTAGAGAAGTGCTATAactttcattttcac
tggagagattctttgatcttaggagatcatcactgtgaaaaaatttcact
aaaatatttattcaatataaagttatgatacaaactaataagtgattgac
cccaaaaacagcagaaaacagcagaaaacagcagaaaacagcgtttttag
acgtcaaatCAGATTATaactttgcttgatatcttttgattgaatgatta
ttttttagaaattttttcacatgatgacgttcgataatgaaggattcact
tcagtgaaaatgatagttatagcacctttctataagatcttcattttttt
cttcttcattttcattttcatttttagaatttgtttaaagatttttttat
ttcaaattgatccACTTACTAatttctttccaatgataccaaatttataa
agattgaagaattgcttcaaaagttataggtaaatgaaaaaagagtgcac
acttatcgtgaatagactttaattttggttggggtttaaaaaattgggta
acagttttggtcggggataaaaaaatcgggtaaaattttcgtcgggtgat
aaaatattggggagaaaattcgtcggggaaaattttcgtcgcgccctcaa
aattttcgtcactttccccgacatctttttccctgataaggtaaAAAGAA
CTGCACAAcaggcgaaaaaaaaaaatagtgttTCTGGAAAGTGGGTGAAG
GCTAAAAGCTCTCATACGACCAgctgaaataaaacttttttgtgcTATTT
TTGTTAACTtaaaatcattgaaatagaactttaaagataacttttatgta
caaaaagTATCAAGTAAGCCTGAATACTAATACGTATCAATTACACACgg
acaaaacttgatttacaggCGGGAATATTTAACCAagcgacgtttgatag
cttgaactttttttcacccggccggtttccggaaacactacatttttttt
aattttcgcctcatattcataacttttgaaaatatttatgtgTATTATGA
AATCTGAACAGTGTGACTAGATTATGGAcgaatttattttcattagagAT
GACcaccagatgacgtcatcaaattttgacatttccAAAATGGGAACCCC
TCTAATTAtcttttaacttatttttttttcggcaaagtAGCTTTCAACCA
AACGTAtttttaatcgaaccaatcgaactttgtcgaacttaatcgaactt
ggTTGTCCAATTGATGTTCGACTAAGTTCggttgtcgaactttaatcgaa
taGTCATTCTTATAAATACAAATTCTCCAAAGtataaagttcgattaaag
aaattaaaggaatcgaacttaatcgaacttaataAAACTTGATCGAGTTT
AATAAAACAATAATTTGAGAAAATCCTTCGAACTTTTCTTATTGTCAAAC
TTTGTCGAACgtagttttttgtcgaatttgtcaaacatttcttgctgttg
aactttgtcgaacttaatatgtatgttttgtcgaacttaattgaATACTC
ACACAATTTTAGGgacttttgaaaagttcgattaaataaTTTAAGATATA
GATTAAGTTTGACAAAGctcgattagttcggtaatcgaactgttcgatta
attacgtctggtttCAAGAATTGAACGAGCCAATCACTTAATACGTGTTG
ATAGCCAAATTTGTATTCTGTTCTGTAAAATATTAACCAAACAGAATGAA
AGTACCAATTATGTAAATCTACTACTGGTTAAAATTTCAAtagcatacat
gttttttttataagaatatccaaaatttttgaagtcttcggatgttgtta
actttttcggtttcgagcctaaaaatgttcctattttaaccaatttttga
ccatttttacccattttcctaagaagttgaatgtttttgagtccattaag
ccttaaaatgttcttaacttgttcttattaacattttggccgtcgaagcc
ttatgttgttatatagtttgttcttataaaaaaaacgtgtaacacatttt
gaaattttaagaggAACTCGAGGCTGCCCAAAAAGCTTTCCTTAGTAAGA
TATACGTCCAGATGTAGAATTCAAAAACTTAAGTatctattttacagacc
ggtttGTAGACTACCAGAAAAAACAATTCTTTCAGCATATATTTCATCTT
TTACAGAATCAATGTTCTTCAAACAATACCATCTGTAATCTGGGTATCTG
TTTACCAAATTATGTGACAGATTCTTACACTTGTCATTGCCCATCCAGAT
ACACTGGTGCAAATTGTGAAACCCAAATCATTACATGTGAGTTACTCAAT
ACACAGGCTGCAAAGTATCCCAactggcacacgacgttgtttcaacgtcc
atctaacgttatatggatgttgtgaacgttatataaacgtcaaaagacgt
tgtgtgccagctgggatgaaGTCGTCACGCTTTTACTGGacatttttatg
tgcttgttatatgacatttatttctgattagTTCAAATATATAATATTAT
ATTTATAAACACAggtaaagttatcagctgtaagttgtaaagcaagtaat
aacatgggaataaaatcacgagaactttttcgagtaatcacatgttttta
ctgcattgatataatttcgCAACCATGTATTACATTTTTGCAAACTGTAT
CATGGCGTTACTGAAAATACTACTTTAGTGAGATTAATTTTtacggggat
taaatttcgcggttgagctcattcatgaaattttaagataatgcggggct
ctgaccatagtgaatttttaatatttgccacctacaaaatatgaatttct
gcctgatgtagcggaaaaaactttgacatgttatacattttctgttaggc
caactatccgtgagtctaaaaatttaaaaatcacaatgctaaaatttgat
gaaaaagaaaatgaagacttttgcgaagaagagtatttcaactttgagga
gcttagtttcggtgaagaaaaatacatttaaaaagatttttgcggtagat
ggtgtcttttttatcgaactaaaattaatttttcgggaaatctttctaaa
agcttatttgcttcaaaatcttgaaaatagtaattttcaccaattttcca
tcccaaattttcatagaaaaacaaccataacatttgatgcattaatttag
aaaaattttccggaaattttaaaacagtttaattttttgctagcctggat
atccaagctcaaaatttaagaaaaaacaaaatttacctcaacatacaaag
ttcttaaattatagagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNACGAGAATGCaaaacgctctagggagaccaggctgtaaatcagaac
ataaaatatctaaaactagactgtgaaataatttacagcctggatatcca
ggctaatttTTTGCAGACAGTtcgaaaaaacttcgaaacaaaaaggttga
cccattaaaacttagcactttgtataaaagaaggtgatgcaacgtctttt
taaagttcataacgtcatttttgcaattaagttcttaattactcttaagg
ggggatttgattaaaaaacaatttataaaggcaattcttatttgttaaag
ggacataaaagtgttaaagaatctaaaaaataaGAGCCCTTGAATCCGCG
GATGACTCTATTGTGACATTGTATTTTCACGACTTTGTGCTATTTTTGCT
ATTCTATTGCCAAACTATGCCATGTTGAAATATGCATTATCAGCGCTTCT
TTGATGGGCGGTAAACATGTTAAAAGtagtcttttgaaattttttggaac
TTAATTCAAAAAAGCTTTTGTAGTCAAGGTCCGTGAAATCCGTGAAATCC
TCGAAATTTAATCCTTGCGAAAACTAGTGCAGTTATTATGACAACACTAt
tccagctggcacataacgttgtttcaacgtttatttaacgttcacaacgt
ccatataacgttagatgaacgttgaaacaacgttgtgtgccagctgggat
gacACTACCGTGCTGATATATATTAACCAAAATTCGGGAAAATAGTTACT
TCATCAGTGGACTACTCTTagaggtgccaaataaacgggccccctgcttg
ttaatttttcgaaaattttctgaCCCACCCGAACCTTCTTAggacccccc
tgtttattaattattaagaatatttttagttaACAAGAAGAAGTCGCCTT
ATTTGGCTCCAAAAAGTCTGATTTCaacctatatttaccttattttttgg
ttttcagaagtacaacaTCCAACCCTCCCCCGACAATTAGGTCcctccgt
ttattaaaatttcgaaaatgttCCAACCCCCTCCCCGTTTAAtcgacccc
ccgtttattcgggATCTAAGATTACATGCAATATGAGTGGTGCTCTTACA
TGAAATTAACTGTTCAAATTTTGTCTTGATGAAGCGGCtactttttcatg
ttttatcaTTATTATGGGCTATTTCTCTTCAAGCGACATCAGCAGCGACG
TCGGAACCTGCAACTACGACGCCGAAACCTGTAACTACGACATCGACGTT
CGTTTTAACAACACCTGCAGAGCCTTTAGGTATAAATGCTTAatatttct
ttctatttttgtgGATATATCAAATCGGTTACAAGGTTTTGAGCAgtaaa
aatttatgaaatattAAACGTTGTCCATTTTGGGAGGCTTAAGAAAGATG
CAAAAGTTTGTACAGTAAAACATCCAATTAACAGAGACTCTAAAAAGCGG
ACGCCTCTGATTAGTGGACCAATTCAATTTTCCCCAACCATTTTCTAGTG
GaatcctcataaaaaatgtCCCTCCAATGCTCCAATTAGCAGACCCTCCA
ACTAGTGGACGCAGACCTTAAAAAATAGACAAGATTGATTTGTCCAAACT
ATTTATTTCTTAAACACTTCAAAGTGTCATTGAGAAAATTGCTTATAGAC
GTTTGGAGCGCTCCCTTCATTCAGTCGGTGAATTTTACAGGGACCTCAAG
ACTACTATGATTCATGAAATAAAGATTTTAGCATTTAAATAATCATTCTC
TTGTTCTTTCATACCCCTTTTGTATAATAGTGCCTTCTTTACCAAAATTA
GAGCACATAATTGAAAAGTTTCCAAATGGCGGACACTTCTACTTAGCAGA
CATGATTCCGTTTTCCCGATgatgcccagctggcacacgacgttgtttaa
acgttaatataacgttatatggacgtagtgaacgttagatagacgttgaa
acaacgttgtgtgccagctggtgtCCAATAATTGGAGGTTCCACTGTAAA
TAAGAACGAGTCGAGATTCGATACCTATAAAATGACATTATTTTTGATTA
CCAAAATCCAAAAGCTACCTAAAATTGAGACCCTCATTTAATAGTAAAAT
TTCAATAGAATCTAAATAATGctaaaattttattagaacTACTCTTAGCT
TCCAAATAAACATCCCCCTgcttcataatttttcaaaaattttctagccc
ccccccggaccttattaagCCCCCAtgtttattagtttttaagaaTATAA
GAATACAAAGCTTGATTTTAGCCTACTATATACTCCCCAGGCAAATAGGT
CCACTCCctcgtttattaaaatttttattaattaccagctccccccgttt
atttggaacctaagagtaaacaCTGCAAAAAAAGACTTCAGACATGTACT
Gctatagcctgggaatccaagcgttaaactttgttcacagtctagtttat
gatattttcgcTGCTTCTATattcttagaactttgtgaggtgaggtattt
atgtttttttccaagattataagcttggattcccaggctagtacAGCTAT
TATTATATAGATAACTGCCTCATAAATTTCCATCAACACGACACTTTAAA
TAGGATTTATGTATTTCATAGGGACTTTTGCGCGAGAAAATTCAAATCCA
GCCTTCACATATGCCAAGATACCAGATGATTGGCAGTTATCAATTGGGGT
GGAGATTGAAGGTCAAATTATGGAAAACAGTGGTGAACCCATAAGTCTCA
TCCACTTGGTGTACGGTGACAACCCGTCCAATAAAcatgttttatttact
ttggttTATAACAAACATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058439-exon-scaffold_311-1491911889:244181..244329 | TCONS_00058439-exon-scaffold_311-1491911889:244181..244329 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1510915933:244181..244329 | TCONS_00058439-exon-scaffold_311-1510915933:244181..244329 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1575043694:244181..244329 | TCONS_00058439-exon-scaffold_311-1575043694:244181..244329 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1491911889:249914..250009 | TCONS_00058439-exon-scaffold_311-1491911889:249914..250009 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1510915933:249914..250009 | TCONS_00058439-exon-scaffold_311-1510915933:249914..250009 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1575043694:249914..250009 | TCONS_00058439-exon-scaffold_311-1575043694:249914..250009 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1491911889:251352..251552 | TCONS_00058439-exon-scaffold_311-1491911889:251352..251552 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1510915933:251352..251552 | TCONS_00058439-exon-scaffold_311-1510915933:251352..251552 | Clytia hemisphaerica | exon |
| TCONS_00058439-exon-scaffold_311-1575043694:251352..251552 | TCONS_00058439-exon-scaffold_311-1575043694:251352..251552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:244181..251552 + |
Blast
The following BLAST results are available for this feature:
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