TCONS_00058435 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058435
Unique Name	TCONS_00058435
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1412

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:243179..253170+

transcript sequence

>TCONS_00058435 ID=TCONS_00058435|Name=TCONS_00058435|organism=Clytia hemisphaerica|type=transcript|length=1412bp
taatttaaacatgaagaaaattttacttcttCTTTTGATGCATTTTGCTC
TTTTTGAAGCAGCGAAAATCGAAGAATCGAACACAACAGTTGGGGATACT
GTTTATCATGTCAAGAAAGTTGCGTTCAGAAGATATGACAATGTGATGCC
GACTTCTGATGCCAACACACACCAAAGTATTAGAGAAATCACCAATGCCA
CTTCACAggTTTGTGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGC
TTTTTGCTTTTTCGCCACAAAACACCACCGACTTGCACTCTTATTGATGG
ACCAATCGATCGAAGATATATGATCAAAAATTCAACCGTCGACTATTATG
AAGTCTGGAATCAATGTTCTTCAAACAATACCATCTGTAATCTGGGTATC
TGTTTACCAAATTATGTGACAGATTCTTACACTTGTCATTGCCCATCCAG
ATACACTGGTGCAAATTGTGAAACCCAAATCATTACATCGACATCAGCAG
CGACGTCGGAACCTGCAACTACGACGCCGAAACCTGTAACTACGACATCG
ACGTTCGTTTTAACAACACCTGCAGAGCCTTTAGGGGCTTTTGCGCGAGA
AAATTCAATTCCAGCCTTCACCTATGCCAACATACCAGATGATTGGCAGT
TATCAATTGGGCTGGAGATTAAAGGTCAAACTATGGTAAACAGTGGTGAA
CCCATAAGTATCATCCACCTGGTGTACGGTGACAACCCGTCCAATAAAca
tgttttatttactttggttTATAACAAACATTTTGAGCTTCACTACAATG
GAAATGAGCACCCGATCCAAAGCCAAGGACCACCTCTGTTTCCTTCAGGA
CCTTTTGAACCATCCCGATCTTACACTTacaatgtgatttttgaattcac
TAAGTCGTTAAACAAACTCAGTTGCACTATCAAATTCACTAACGGTCCGT
TGAGCACATTCACCGTTGCGTCTGCTAAAGATCTTGATATCAGTCCAGTT
TATGACCTTACAAATGTTGAACTCTATGTTGGTTACCCTGATCACAGCAA
ATATACTGGAGAGTACAATGTCCATGATGTTGTGGTGACAACAGTTGGAA
TATCCAACTTGGTTTAAAGTTCCTtctaaacacccccttctcacaaaccc
atcaggaacccttcccactggaaaaactttcccaaaaattgttcccggtg
gaaaattatcctccaattttcgtccccattgaattttctgacttgaaaac
aaaagaattgaaatccccaggcATAAAAGACATTGGAATACCAATTCcca
tcgggtctgtgagaagggggtgtttctAATATGAACCATACAGTGATTTC
ATAAAAAAGCGAACAATTCTTTAAGTATTTAAACCCCCTTTAAAGTAAAA
TCCTTATAATTC

Run BLAST on NCBI

transcript from alignment at scaffold_311:243179..253170+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058435 ID=TCONS_00058435|Name=TCONS_00058435|organism=Clytia hemisphaerica|type=transcript|length=9992bp|location=Sequence derived from alignment at scaffold_311:243179..253170+ (Clytia hemisphaerica)
taatttaaacatgaagaaaattttacttcttCTTTTGATGCATTTTGCTC
TTTTTGAAGCAGCGAAAATCGAAGAATCGAACACAACAGTTGGGGATACT
GTTTATCATGTCAAGAAAGTTGCGTTCAGAAGATATGACAATGTGATGCC
GACTTCTGATGCCAACACACACCAAAGTATTAGAGAAATCACCAATGCCA
CTTCACAGTAAGTACCACATGCGACCGTAGGCAAGGTtttgggttcgatc
cccagccgagtcataccaaagattgccaaaatggtacttgatcctctctg
cttgatgctcagtaacTAAAAaaacggatcaagggtaagtggagaaatcc
agggaaaggagtgacGCCCTCCCCTACTTTCGGGTAGACagcttacttac
ttactttacttaAGCACCATATACTGCGTCCAGAAACATGGGGAATGTGC
CTTTATCCGCCTCTTATGTCATcccttagaccatgttcagacgttactgT
TTGGTTTCGCTTCGGTGTatttttcgttacggatcgagagtgttcggttt
tggaacgtttcggagcaagaaaacagaGCCGTTCCGTTCCAATGTAAAAA
GCGGAGTGAAACCGTTTCGATTTGTTTTGCTTTCTAacctcttctttttt
gacgtttcgaattttgacgttcacacttgtttcggaaccgtttccattca
gagcgaaacggaactgtaacgtctgaacatggtcttattgtttttatgtt
ttggcCTGTCACATAATTAAGATATATCATAGACATCTTACATAAAAcac
tacccagctggcacacaacgtttttttgacgtttatctaacgttcacaac
atccatataatgctagatgaacgttgaaacaacgtcgtgtgccagctggg
tagacAGAGCTACTCTATAGATACCTTGGTTTTCactgttgaaacttttt
tgatacaCCAACAAtggtgtttcaaaaaaaaacatttgtttttatttcag
ggTTTGTGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGCTTTTTGC
TTTTTCGCCACAAAACACCACCGACTTGCACTCTTATTGATGGACCAATC
GATCGAAGATATATGATCAAAAATTCAACCGTCGACTATTATGAAGTCTG
GGTAAGTTACcctatcggggaaaaaaattttggagttttatttagtcagg
GTTTTTTTTTCGCCGGAGAAAAATTTCGTTACCTacaggcattttcgtca
cttttccccgacgaaatttacaatttggtCACTCTCAtccaactaaattg
tccaaatgaaatggtttcctgcACTAGCTTCGAAAATAGATTTTGTAATT
TGACgtttaataaaggtgtaaaacaTTTAGattttaaagtctgttcacga
taagtgtgcactcttttttcttttaactataacttttgaaggaattcttc
aatttttataaatttggtatcattggaaagatattagtgagtggatcaat
ttgaaataaacaagtctttaaacaaattctaaaaacgaagatgaaagTGA
AGAAGAAAAAAATGAAGATCTTGTAGAGAAGTGCTATAactttcattttc
actggagagattctttgatcttaggagatcatcactgtgaaaaaatttca
ctaaaatatttattcaatataaagttatgatacaaactaataagtgattg
accccaaaaacagcagaaaacagcagaaaacagcagaaaacagcgttttt
agacgtcaaatCAGATTATaactttgcttgatatcttttgattgaatgat
tattttttagaaattttttcacatgatgacgttcgataatgaaggattca
cttcagtgaaaatgatagttatagcacctttctataagatcttcattttt
ttcttcttcattttcattttcatttttagaatttgtttaaagattttttt
atttcaaattgatccACTTACTAatttctttccaatgataccaaatttat
aaagattgaagaattgcttcaaaagttataggtaaatgaaaaaagagtgc
acacttatcgtgaatagactttaattttggttggggtttaaaaaattggg
taacagttttggtcggggataaaaaaatcgggtaaaattttcgtcgggtg
ataaaatattggggagaaaattcgtcggggaaaattttcgtcgcgccctc
aaaattttcgtcactttccccgacatctttttccctgataaggtaaAAAG
AACTGCACAAcaggcgaaaaaaaaaaatagtgttTCTGGAAAGTGGGTGA
AGGCTAAAAGCTCTCATACGACCAgctgaaataaaacttttttgtgcTAT
TTTTGTTAACTtaaaatcattgaaatagaactttaaagataacttttatg
tacaaaaagTATCAAGTAAGCCTGAATACTAATACGTATCAATTACACAC
ggacaaaacttgatttacaggCGGGAATATTTAACCAagcgacgtttgat
agcttgaactttttttcacccggccggtttccggaaacactacatttttt
ttaattttcgcctcatattcataacttttgaaaatatttatgtgTATTAT
GAAATCTGAACAGTGTGACTAGATTATGGAcgaatttattttcattagag
ATGACcaccagatgacgtcatcaaattttgacatttccAAAATGGGAACC
CCTCTAATTAtcttttaacttatttttttttcggcaaagtAGCTTTCAAC
CAAACGTAtttttaatcgaaccaatcgaactttgtcgaacttaatcgaac
ttggTTGTCCAATTGATGTTCGACTAAGTTCggttgtcgaactttaatcg
aataGTCATTCTTATAAATACAAATTCTCCAAAGtataaagttcgattaa
agaaattaaaggaatcgaacttaatcgaacttaataAAACTTGATCGAGT
TTAATAAAACAATAATTTGAGAAAATCCTTCGAACTTTTCTTATTGTCAA
ACTTTGTCGAACgtagttttttgtcgaatttgtcaaacatttcttgctgt
tgaactttgtcgaacttaatatgtatgttttgtcgaacttaattgaATAC
TCACACAATTTTAGGgacttttgaaaagttcgattaaataaTTTAAGATA
TAGATTAAGTTTGACAAAGctcgattagttcggtaatcgaactgttcgat
taattacgtctggtttCAAGAATTGAACGAGCCAATCACTTAATACGTGT
TGATAGCCAAATTTGTATTCTGTTCTGTAAAATATTAACCAAACAGAATG
AAAGTACCAATTATGTAAATCTACTACTGGTTAAAATTTCAAtagcatac
atgttttttttataagaatatccaaaatttttgaagtcttcggatgttgt
taactttttcggtttcgagcctaaaaatgttcctattttaaccaattttt
gaccatttttacccattttcctaagaagttgaatgtttttgagtccatta
agccttaaaatgttcttaacttgttcttattaacattttggccgtcgaag
ccttatgttgttatatagtttgttcttataaaaaaaacgtgtaacacatt
ttgaaattttaagaggAACTCGAGGCTGCCCAAAAAGCTTTCCTTAGTAA
GATATACGTCCAGATGTAGAATTCAAAAACTTAAGTatctattttacaga
ccggtttGTAGACTACCAGAAAAAACAATTCTTTCAGCATATATTTCATC
TTTTACAGAATCAATGTTCTTCAAACAATACCATCTGTAATCTGGGTATC
TGTTTACCAAATTATGTGACAGATTCTTACACTTGTCATTGCCCATCCAG
ATACACTGGTGCAAATTGTGAAACCCAAATCATTACATGTGAGTTACTCA
ATACACAGGCTGCAAAGTATCCCAactggcacacgacgttgtttcaacgt
ccatctaacgttatatggatgttgtgaacgttatataaacgtcaaaagac
gttgtgtgccagctgggatgaaGTCGTCACGCTTTTACTGGacattttta
tgtgcttgttatatgacatttatttctgattagTTCAAATATATAATATT
ATATTTATAAACACAggtaaagttatcagctgtaagttgtaaagcaagta
ataacatgggaataaaatcacgagaactttttcgagtaatcacatgtttt
tactgcattgatataatttcgCAACCATGTATTACATTTTTGCAAACTGT
ATCATGGCGTTACTGAAAATACTACTTTAGTGAGATTAATTTTtacgggg
attaaatttcgcggttgagctcattcatgaaattttaagataatgcgggg
ctctgaccatagtgaatttttaatatttgccacctacaaaatatgaattt
ctgcctgatgtagcggaaaaaactttgacatgttatacattttctgttag
gccaactatccgtgagtctaaaaatttaaaaatcacaatgctaaaatttg
atgaaaaagaaaatgaagacttttgcgaagaagagtatttcaactttgag
gagcttagtttcggtgaagaaaaatacatttaaaaagatttttgcggtag
atggtgtcttttttatcgaactaaaattaatttttcgggaaatctttcta
aaagcttatttgcttcaaaatcttgaaaatagtaattttcaccaattttc
catcccaaattttcatagaaaaacaaccataacatttgatgcattaattt
agaaaaattttccggaaattttaaaacagtttaattttttgctagcctgg
atatccaagctcaaaatttaagaaaaaacaaaatttacctcaacatacaa
agttcttaaattatagagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACGAGAATGCaaaacgctctagggagaccaggctgtaaatcaga
acataaaatatctaaaactagactgtgaaataatttacagcctggatatc
caggctaatttTTTGCAGACAGTtcgaaaaaacttcgaaacaaaaaggtt
gacccattaaaacttagcactttgtataaaagaaggtgatgcaacgtctt
tttaaagttcataacgtcatttttgcaattaagttcttaattactcttaa
ggggggatttgattaaaaaacaatttataaaggcaattcttatttgttaa
agggacataaaagtgttaaagaatctaaaaaataaGAGCCCTTGAATCCG
CGGATGACTCTATTGTGACATTGTATTTTCACGACTTTGTGCTATTTTTG
CTATTCTATTGCCAAACTATGCCATGTTGAAATATGCATTATCAGCGCTT
CTTTGATGGGCGGTAAACATGTTAAAAGtagtcttttgaaattttttgga
acTTAATTCAAAAAAGCTTTTGTAGTCAAGGTCCGTGAAATCCGTGAAAT
CCTCGAAATTTAATCCTTGCGAAAACTAGTGCAGTTATTATGACAACACT
Attccagctggcacataacgttgtttcaacgtttatttaacgttcacaac
gtccatataacgttagatgaacgttgaaacaacgttgtgtgccagctggg
atgacACTACCGTGCTGATATATATTAACCAAAATTCGGGAAAATAGTTA
CTTCATCAGTGGACTACTCTTagaggtgccaaataaacgggccccctgct
tgttaatttttcgaaaattttctgaCCCACCCGAACCTTCTTAggacccc
cctgtttattaattattaagaatatttttagttaACAAGAAGAAGTCGCC
TTATTTGGCTCCAAAAAGTCTGATTTCaacctatatttaccttatttttt
ggttttcagaagtacaacaTCCAACCCTCCCCCGACAATTAGGTCcctcc
gtttattaaaatttcgaaaatgttCCAACCCCCTCCCCGTTTAAtcgacc
ccccgtttattcgggATCTAAGATTACATGCAATATGAGTGGTGCTCTTA
CATGAAATTAACTGTTCAAATTTTGTCTTGATGAAGCGGCtactttttca
tgttttatcaTTATTATGGGCTATTTCTCTTCAAGCGACATCAGCAGCGA
CGTCGGAACCTGCAACTACGACGCCGAAACCTGTAACTACGACATCGACG
TTCGTTTTAACAACACCTGCAGAGCCTTTAGGTATAAATGCTTAatattt
ctttctatttttgtgGATATATCAAATCGGTTACAAGGTTTTGAGCAgta
aaaatttatgaaatattAAACGTTGTCCATTTTGGGAGGCTTAAGAAAGA
TGCAAAAGTTTGTACAGTAAAACATCCAATTAACAGAGACTCTAAAAAGC
GGACGCCTCTGATTAGTGGACCAATTCAATTTTCCCCAACCATTTTCTAG
TGGaatcctcataaaaaatgtCCCTCCAATGCTCCAATTAGCAGACCCTC
CAACTAGTGGACGCAGACCTTAAAAAATAGACAAGATTGATTTGTCCAAA
CTATTTATTTCTTAAACACTTCAAAGTGTCATTGAGAAAATTGCTTATAG
ACGTTTGGAGCGCTCCCTTCATTCAGTCGGTGAATTTTACAGGGACCTCA
AGACTACTATGATTCATGAAATAAAGATTTTAGCATTTAAATAATCATTC
TCTTGTTCTTTCATACCCCTTTTGTATAATAGTGCCTTCTTTACCAAAAT
TAGAGCACATAATTGAAAAGTTTCCAAATGGCGGACACTTCTACTTAGCA
GACATGATTCCGTTTTCCCGATgatgcccagctggcacacgacgttgttt
aaacgttaatataacgttatatggacgtagtgaacgttagatagacgttg
aaacaacgttgtgtgccagctggtgtCCAATAATTGGAGGTTCCACTGTA
AATAAGAACGAGTCGAGATTCGATACCTATAAAATGACATTATTTTTGAT
TACCAAAATCCAAAAGCTACCTAAAATTGAGACCCTCATTTAATAGTAAA
ATTTCAATAGAATCTAAATAATGctaaaattttattagaacTACTCTTAG
CTTCCAAATAAACATCCCCCTgcttcataatttttcaaaaattttctagc
ccccccccggaccttattaagCCCCCAtgtttattagtttttaagaaTAT
AAGAATACAAAGCTTGATTTTAGCCTACTATATACTCCCCAGGCAAATAG
GTCCACTCCctcgtttattaaaatttttattaattaccagctccccccgt
ttatttggaacctaagagtaaacaCTGCAAAAAAAGACTTCAGACATGTA
CTGctatagcctgggaatccaagcgttaaactttgttcacagtctagttt
atgatattttcgcTGCTTCTATattcttagaactttgtgaggtgaggtat
ttatgtttttttccaagattataagcttggattcccaggctagtacAGCT
ATTATTATATAGATAACTGCCTCATAAATTTCCATCAACACGACACTTTA
AATAGGATTTATGTATTTCATAGGGACTTTTGCGCGAGAAAATTCAAATC
CAGCCTTCACATATGCCAAGATACCAGATGATTGGCAGTTATCAATTGGG
GTGGAGATTGAAGGTCAAATTATGGAAAACAGTGGTGAACCCATAAGTCT
CATCCACTTGGTGTACGGTGACAACCCGTCCAATAAAcatgttttattta
ctttggttTATAACAAACATTTAGAGGTAATAGCGCATCACAGTGTGAAA
ATGAAGTCCATGCCAaatgttttatttgtttatacTGAGGTCTACGCCTC
AAATAAGTTTTAGGGGGGGACCGAATAAATTGGACGGGGTTTTGGGGGAG
GCTGTAAGCCCCCTCCCAAACGTGTCCAGGGAAAGCCCTGGAATATTTGA
TCTTCTCCCGCCTCAAAGATNccctccatttgcctaagtccccccccccc
gctatattcttagaactttgtgaggtgaggtatttatGTTTTTTCCAAGA
TTAtaagcttggattcccaggctagtacggctattattATATAGATAACT
GCCTCATAAATTTCCATCAACACGACACTTTAAATAGAATTTATGTATTC
CATAGGGGCTTTTGCGCGAGAAAATTCAATTCCAGCCTTCACCTATGCCA
ACATACCAGATGATTGGCAGTTATCAATTGGGCTGGAGATTAAAGGTCAA
ACTATGGTAAACAGTGGTGAACCCATAAGTATCATCCACCTGGTGTACGG
TGACAACCCGTCCAATAAAcatgttttatttactttggttTATAACAAAC
ATTTTGAGGTAATAGCGCATCACAGTGTGAAAATGAAGCCCATGCCGAAT
TGTTATTTGTTTATACTGAGGTCTacaccaaaaaaagtttcaattgtGGA
ATtttacgggggggggggggtttcccccccccccaaaaatcccccaatac
aaatttttttttttttatactgAGGTCTAccccaaaaaaagtttcaattg
tggaattttccgggggggggggggggaaaaaaaagtgGAGGGGTTTTGGG
GGGGGCTGTAAGCCCCCCTCCCAAACGTGTCCAGGGAAAGCCCTGGAATA
TTTGATCTTCTCCCGCCTCAAAGATGCCCAAAATTTGCTATATTTTCTAg
ttttaagatgaaaaaaaaacttttactctAATTTAATATATAAccaattt
tcaacctttttcttCAGCTTCACTACAATGGAAATGAGCACCCGATCCAA
AGCCAAGGACCACCTCTGTTTCCTTCAGGACCTTTTGAACCATCCCGATC
TTACACTTacaatgtgatttttgaattcacTAAGTCGTTAAACAAACTCA
GTTGCACTATCAAATTCACTAACGGTCCGTTGAGCACATTCACCGTTGCG
TCTGCTAAAGATCTTGATATCAGTCCAGTTTATGACCTTACAAATGTTGA
ACTCTATGTTGGTTACCCTGATCACAGCAAATATACTGGAGAGTACAATG
TCCATGATGTTGTGGTGACAACAGTTGGAATATCCAACTTGGTTTAAAGT
TCCTtctaaacacccccttctcacaaacccatcaggaacccttcccactg
gaaaaactttcccaaaaattgttcccggtggaaaattatcctccaatttt
cgtccccattgaattttctgacttgaaaacaaaagaattgaaatccccag
gcATAAAAGACATTGGAATACCAATTCccatcgggtctgtgagaaggggg
tgtttctAATATGAACCATACAGTGATTTCATAAAAAAGCGAACAATTCT
TTAAGTATTTAAACCCCCTTTAAAGTAAAATCCTTATAATTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036822	XLOC_036822	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:243179..253170 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.07599e-07	0	0	0	0	0	0	0	0	0	0.0393997	0.654629	1.38156	0.0675637	0	0.586618	3.50774	4.38895	0	1.65692e-06	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058435 vs. Swiss-Prot (Human)

BLAST of TCONS_00058435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058435 (transcript) - C. hemisphaerica