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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058404 ID=TCONS_00058404|Name=TCONS_00058404|organism=Clytia hemisphaerica|type=transcript|length=764bp
ATTAAGTGTTGATAAGTTGTTTTCAACATGTCAGCGTCAGACAGCTCATC
AGAAGAGGATCATGCAACTTCGAAAGAGGAACCAAAGATAAAGCCGAAAG
CAGAAATTAGATCGATTCCACTGGTGCATGCTTTGAAAACGTTTGTCGTA
GAAAATGTAATGAAACACTACACAGTGGCAGCTATCAGAGCCTTAATGAA
ACCTGACTCaaaagttgaaatttggcaAGTACGTCAAGCtttagaaaaga
aattttctgaAGACGCTCATATCGCTGGCTTTGTGTCTTGTGGCACTGCT
TTAAAAACTAAATACAAAGGCCAGGATATAGATCTGCCTGGAATAAGTTT
TTTTGTCATGTTCGATTGGGCAGAGTGTGCTATCGATTCCTACGAAAACC
ATCTTTCTAAAGTTGTTATGAATTCTGGTTTGGATATTTACAACTGCAGG
GCATTGAGAGGAAGAAaggGTGATTACTTGGCAAAAGCTCTTTGTGTGAC
AGTTAAAGATCACACAAATGAAACTGTTTTGATGGCATTTGTAAAGAGCC
AGATCCGAGTTGTACGTGCTGAGGCCAAGAAAGAAGGCATTGAAATGAAG
AATGTTCACCTTGAGGAAGGCCAAAACTATTCATCCAAAACCTTGACTAA
ATTGTGGATGACTCAACGAATGGCTGTCGGTGTTGCAAACGAGTTACGTC
CGGCTATTCAAAAACTACAACAGTGGATTGCAATCAAAATTGTTGACGAT
TCTCTCTCGGGTAA Run BLAST on NCBI protein sequence of TCONS_00058404-protein >TCONS_00058404-protein ID=TCONS_00058404-protein|Name=TCONS_00058404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MSASDSSSEEDHATSKEEPKIKPKAEIRSIPLVHALKTFVVENVMKHYTV
AAIRALMKPDSKVEIWQVRQALEKKFSEDAHIAGFVSCGTALKTKYKGQD
IDLPGISFFVMFDWAECAIDSYENHLSKVVMNSGLDIYNCRALRGRKGDY
LAKALCVTVKDHTNETVLMAFVKSQIRVVRAEAKKEGIEMKNVHLEEGQN
YSSKTLTKLWMTQRMAVGVANELRPAIQKLQQWIAIKIVDDSLSG Run BLAST on NCBI transcript from alignment at scaffold_310:229275..230245- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058404 ID=TCONS_00058404|Name=TCONS_00058404|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at scaffold_310:229275..230245- (Clytia hemisphaerica)
ATTAAGTGTTGATAAGTTGTTTTCAACATGTCAGCGTCAGACAGCTCATC
AGAAGAGGATCATGCAACTTCGAAAGAGGAACCAAAGATAAAGCCGAAAG
CAGAAATTAGATCGATTCCACTGGTGCATGCTTTGAAAACGTTTGTCGTA
GAAAATGTAATGAAACACTACACAGTGGCAGCTATCAGAGCCTTAATGAA
ACCTGACTCAAAAGTTGAAATTTGGCAAGTACGTCAAGCTTTAGAAAAGA
AATTTTCTGAAGACGCTCATATCGCTGGCTTTGTGTCTTGTGGCACTGCT
TTAAAAACTAAATACAAAGGCCAGGATATAGATCTGCCTGGAATAAGTTT
TTTTGTCATGTTCGATTGGGCAGAGTGTGCTATCGATTCCTACGAAAACC
ATCTTTCTAAAGTTGTTATGAATTCTGGTTTGGATATTTACAACTGCAGG
GCATTGAGAGGAAGAAGTAAGTTTAATTTTCTAATTTTCTTGCGCGTGAT
TTAAACTCATTTCAAGATGGAAAAAAGATTGGTGCCCGTCGCCCCAAAAT
TTTCAATATTGTGGTTAAGTATTTTTCTATCCAAACGTGTAATACGAGAT
TAAACCAAATATATAATCTTTAAGGTGATTCCGTTTAGTTTGGTAAAACG
ATTTTTCTTTTTTGAATTTTCAGAGGGTGATTACTTGGCAAAAGCTCTTT
GTGTGACAGTTAAAGATCACACAAATGAAACTGTTTTGATGGCATTTGTA
AAGAGCCAGATCCGAGTTGTACGTGCTGAGGCCAAGAAAGAAGGCATTGA
AATGAAGAATGTTCACCTTGAGGAAGGCCAAAACTATTCATCCAAAACCT
TGACTAAATTGTGGATGACTCAACGAATGGCTGTCGGTGTTGCAAACGAG
TTACGTCCGGCTATTCAAAAACTACAACAGTGGATTGCAATCAAAATTGT
TGACGATTCTCTCTCGGGTAA Coding sequence (CDS) from alignment at scaffold_310:229275..230245- >TCONS_00058404 ID=TCONS_00058404|Name=TCONS_00058404|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_310:229275..230245- (Clytia hemisphaerica)
AGGGTGATTACTTGGCAAAAGCTCTTTGTGTGACAGTTAAAGATCACACA
AATGAAACTGTTTTGATGGCATTTGTAAAGAGCCAGATCCGAGTTGTACG
TGCTGAGGCCAAGAAAGAAGGCATTGAAATGAAGAATGTTCACCTTGAGG
AAGGCCAAAACTATTCATCCAAAACCTTGACTAAATTGTGGATGACTCAA
CGAATGGCTGTCGGTGTTGCAAACGAGTTACGTCCGGCTATTCAAAAACT
ACAACAGTGGATTGCAATCAAAATTGTTGACGATTCTCTCTCGGGTATGT
CAGCGTCAGACAGCTCATCAGAAGAGGATCATGCAACTTCGAAAGAGGAA
CCAAAGATAAAGCCGAAAGCAGAAATTAGATCGATTCCACTGGTGCATGC
TTTGAAAACGTTTGTCGTAGAAAATGTAATGAAACACTACACAGTGGCAG
CTATCAGAGCCTTAATGAAACCTGACTCAAAAGTTGAAATTTGGCAAGTA
CGTCAAGCTTTAGAAAAGAAATTTTCTGAAGACGCTCATATCGCTGGCTT
TGTGTCTTGTGGCACTGCTTTAAAAACTAAATACAAAGGCCAGGATATAG
ATCTGCCTGGAATAAGTTTTTTTGTCATGTTCGATTGGGCAGAGTGTGCT
ATCGATTCCTACGAAAACCATCTTTCTAAAGTTGTTATGAATTCTGGTTT
GGATATTTACAACTGCAGGGCATTGAGAGGAAGAAAGGGTGATTACTTGG
CAAAAGCTCTTTGTGTGACAGTTAAAGATCACACAAATGAAACTGTTTTG
ATGGCATTTGTAAAGAGCCAGATCCGAGTTGTACGTGCTGAGGCCAAGAA
AGAAGGCATTGAAATGAAGAATGTTCACCTTGAGGAAGGCCAAAACTATT
CATCCAAAACCTTGACTAAATTGTGGATGACTCAACGAATGGCTGTCGGT
GTTGCAAACGAGTTACGTCCGGCTATTCAAAAACTACAACAGTGGATTGC
AATCAAAATTGTTGACGATTCTCTCTCGGGTATGTCAGCGTCAGACAGCT
CATCAGAAGAGGATCATGCAACTTCGAAAGAGGAACCAAAGATAAAGCCG
AAAGCAGAAATTAGATCGATTCCACTGGTGCATGCTTTGAAAACGTTTGT
CGTAGAAAATGTAATGAAACACTACACAGTGGCAGCTATCAGAGCCTTAA
TGAAACCTGACTCAAAAGTTGAAATTTGGCAAGTACGTCAAGCTTTAGAA
AAGAAATTTTCTGAAGACGCTCATATCGCTGGCTTTGTGTCTTGTGGCAC
TGCTTTAAAAACTAAATACAAAGGCCAGGATATAGATCTGCCTGGAATAA
GTTTTTTTGTCATGTTCGATTGGGCAGAGTGTGCTATCGATTCCTACGAA
AACCATCTTTCTAAAGTTGTTATGAATTCTGGTTTGGATATTTACAACTG
CAGGGCATTGAGAGGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058404-exon-scaffold_310-1575043694:229780..230245 | TCONS_00058404-exon-scaffold_310-1575043694:229780..230245 | Clytia hemisphaerica | exon |
| TCONS_00058404-exon-scaffold_310-1575043694:229275..229572 | TCONS_00058404-exon-scaffold_310-1575043694:229275..229572 | Clytia hemisphaerica | exon |
| TCONS_00058404-exon-scaffold_310-1510915933:229780..230245 | TCONS_00058404-exon-scaffold_310-1510915933:229780..230245 | Clytia hemisphaerica | exon |
| TCONS_00058404-exon-scaffold_310-1510915933:229275..229572 | TCONS_00058404-exon-scaffold_310-1510915933:229275..229572 | Clytia hemisphaerica | exon |
| TCONS_00058404-exon-scaffold_310-1491911889:229780..230245 | TCONS_00058404-exon-scaffold_310-1491911889:229780..230245 | Clytia hemisphaerica | exon |
| TCONS_00058404-exon-scaffold_310-1491911889:229275..229572 | TCONS_00058404-exon-scaffold_310-1491911889:229275..229572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_310 | supercontig | scaffold_310:229275..230245 - |
Blast
The following BLAST results are available for this feature:
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