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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058296 ID=TCONS_00058296|Name=TCONS_00058296|organism=Clytia hemisphaerica|type=transcript|length=2286bp
CAGCGTAAGACACAACGTGAATGAGTTATGCCTtacattttataatttta
caaTCAACGGATTTCTTAGTTCCTGTGCTAGttgtaaaaagttttatata
aaTGAACACATTTGTAAATTTCAAGTATCATTTAAACGCTGTGATAATCC
TGGCAAGAAGGTTGGAGAAGTTgtcgtttttaaaaattcataattctACT
ATTCTATATTGAATGTTCGAAGTCATTTTCAAGATGGTATCGTTCACTTA
TTCAGATTACCAAGCTCAAATGACATTTACTCAATGGAAACAAAAACGTA
GACAAACCATGATTGCAATGTTATTGGTGAATCTAGTTGGTGGTATGGAT
ATCAGCATCATATTGGCAACTATTGTACCATATCTTAGATATACCATCAT
TGTTCAGGATGTCAATGCATTTTACGCGTTTATCACTACAGCTTTTTGTG
TTAGTTCAGCAGTGTTTGGAATCATATCTGGCAAGCTTGTTGATCGCACT
AGACAAATGAAGATCTTCACCAGTATAACGTTACTATTGCAGGTGGTTGG
GAATCTAGTCTACACCATACCAATATCATCAGCTTTTCCTTTGGTTGGCA
GACTCCTGGCAGGTGCTGGTGAAAGTTTTACTGGTGTCTGTATCGGCGAA
GTGATCAGAATCTACGACACCAAAGGAAGCAATCGAATAATCTGTTGGCT
AGCAATGATGAGCTCTTTTGGATACGTCATAGGTCCTGTTATATCAATCC
CATTATCAAAATGTCATTTCAAAATATACGAATTGCGAATTGATGGTTAT
AACATTGCTGGCgttttaattgctattttatgtTCGCTTACCTTCATGTT
ATGCCAGTTTATGATGCATGATTGCTCAAAAATCTTCGATATGAAAAGTC
ATCTAGCTGAGCAAGGGCTAGAGGACGAACCAGAATCAATCGAAGATGAA
TTCTttatcaacaacaacaataacgAAGTGCTGTGTCATGAAGAAACATC
TTCctctgaagatgaagatgaaaatattgCCAAGGAGGAAGAAAGCTTGT
TACCACAAAACTCAAAATCCAAACATTCAAATCCTTTCTGTTTTGCCAAG
GATGAAGAAAGCTTATTACCACAAAactcaaaatcaaaactttcaaatcc
TTTCTGTTTTGCTAAAGATAAAGAAAGCTTATTACCTCAAAACTCAAAAT
CCAAACTTTCAAATCCTTTCTATTTTGTTAGAACATTCGATCAATGGATG
GTACTAGTCTATTCCTTCATCATGATGTTTATAATCGCCAGTGGGGAATC
TTTGATCCCACTTATCAACTATGAGGTTATGAATTGGTCCTTAAACACAC
TTGTTATTATCTTTGTTGGTTACGGTATAGTGTTATTGGCAACTTCAATG
CTGTTATCAAAAATCTGCACCGGAGATGAATCAATCTATCGTGTAGGGTA
TGCTAGTTTCCCATGTGTTATAACCTTCTACTTAGCATTACTTCTTATGT
CTTTGGACATTCGTAACAAAAACAGGGATATTTTCTACATGTTTTTATTC
GTGCTTTCCCTCGTTTTTATATGGTTTATGGAATCGATTGCAATGCGAAG
TATGTTTGGTCGAATGGTGCCATCAGAGTTACAAAGCTTTGCTGAAGCCT
TAAGAGCAGCTGTATCCAGATTTGGTATGGTGGTGTCGAGTTTTGTATCA
CCTTTCCTGCTATCAGTTTTGATGTACTATTCAAGTTGCTTTCTCGTCGT
AGGGGTTATAATGCTGGTGGTTTATATTGCAAGAAGGAAACAATTGACTG
ACATTCAGTTTACTAAACTTTAGAACAGTCTAAATCATGGTCTCCTTTTA
GCAGATGTTTTACTATAAAAGTTAGTCTGGTAAGTTACTCGAGGTAAATG
gccatacgtgcggcccttaaggatatattttccaagcttcccgaAGTGCa
atgtaagggtccgatttcaaaggcctaatttaggGCCGCACGTATAGTCG
TTTTGGAATTTACTATGAAACTGCAGGTGGTATAAAGAGAAAGAATCTGT
TGTATGAAAGGAGTTTAGGTTTAGTAGAGGGTTCTATTagtcctttttct
tttcttttcaccaCTGTACTCTTTTTAACTAACTTACCCAAAGTCGATTT
TATTTCATAACCCCGCATTCtacgattttcaatttttggtttgtaaatat
ttcaaagaaGATTATAGAAATGTTAAAGAAAAATGTATATTATTATAGGC
CCATTAGTAAATAACAAATACATATTGTTCATGTAG Run BLAST on NCBI protein sequence of TCONS_00058296-protein >TCONS_00058296-protein ID=TCONS_00058296-protein|Name=TCONS_00058296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MFEVIFKMVSFTYSDYQAQMTFTQWKQKRRQTMIAMLLVNLVGGMDISII
LATIVPYLRYTIIVQDVNAFYAFITTAFCVSSAVFGIISGKLVDRTRQMK
IFTSITLLLQVVGNLVYTIPISSAFPLVGRLLAGAGESFTGVCIGEVIRI
YDTKGSNRIICWLAMMSSFGYVIGPVISIPLSKCHFKIYELRIDGYNIAG
VLIAILCSLTFMLCQFMMHDCSKIFDMKSHLAEQGLEDEPESIEDEFFIN
NNNNEVLCHEETSSSEDEDENIAKEEESLLPQNSKSKHSNPFCFAKDEES
LLPQNSKSKLSNPFCFAKDKESLLPQNSKSKLSNPFYFVRTFDQWMVLVY
SFIMMFIIASGESLIPLINYEVMNWSLNTLVIIFVGYGIVLLATSMLLSK
ICTGDESIYRVGYASFPCVITFYLALLLMSLDIRNKNRDIFYMFLFVLSL
VFIWFMESIAMRSMFGRMVPSELQSFAEALRAAVSRFGMVVSSFVSPFLL
SVLMYYSSCFLVVGVIMLVVYIARRKQLTDIQFTKL Run BLAST on NCBI transcript from alignment at scaffold_309:554626..559638- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058296 ID=TCONS_00058296|Name=TCONS_00058296|organism=Clytia hemisphaerica|type=transcript|length=5013bp|location=Sequence derived from alignment at scaffold_309:554626..559638- (Clytia hemisphaerica)
CAGCGTAAGACACAACGTGAATGAGTTATGCCTTACATTTTATAATTTTA
CAATCAACGGATTTCTTAGTTCCTGTGCTAGTTGTAAAAAGTTTTATATA
AATGAACACATTTGTAAATTTCAAGTATCATTTAAACGCTGTGATAATCC
TGGCAAGAAGGTTGGAGAAGTTGTCGTTTTTAAAAATTCATAATTCTACT
ATTCTATATTGGTGAGTCACGATTTCATTTTTTTAATAGTAGACTTCTTA
GACTCGAAGACTTTGTAACTATCTTAAAAGAATAATCTCCGAGCCAAAGT
AAATTTCGCGAACGGGATTTGCTTTCAAAAGGAGCTTACAGCCGGGTAGA
GTTGGTGGTCTTTCTAGAGTTCGGCAGCGTTTCTTCGAAACTTTACTGCA
ATAAATTCTTTTATAACTACTGCCATTACTGGATTTAAACACTACGTATC
TACAAACAATGTCGTGCATAATTGAGTGAAATTAGAGAGTCTCTCACCAT
ATTCCCCTAACACCCTGCTTGGCAGTGCTTACGATTCGAACACAGTCGAA
ACCTTCACACTACCAATCGGCAGAATGTTAGTGAGACACAATGATAGCCT
CATCCAGATGGTGGATGAATGTATACCGAAGTTTATCATTCTACGTCTGC
ATTTTTAGCTTTAAGGGCGGTCTTCACTTGCGTGCGCTGCGATCGCACAT
TTTGGCTTCAATTCTTTTTGCTTGGAAAAAAGATTACGTCATAAAAATGT
AGCGCGCGCTCAAAAAAAAAGTTGAACACATTTCAATTTTTTTCAACCGT
TACGTCAGATCGCGCCAATGGAATTGCTTCATTTTTCTTTTGACCAATAG
CGTGGAAGCTTTGCTCGAAAAAGTGCGATCAAAGCGCGCACAAGTGGAGA
CCGGCCTTTACTAAGCTTATTTAACATGTATGATCGATGATTTCTGATTT
AGTTATACTGTAAAACAATCTCCCGCCCCTTTTACTACAATGCTAATGGC
GATTGCTCAGTCGCTGTAATTTTTAGGCTAGAATATTTATCCAATATTTC
AGTAAAGGGGTAAGGAGAAGGAAAACTGATGCAATTACACGTTTTTTTAT
AAGAACATATAAGAACACAAGGCTTAGATAGCCAAATGCTAAGAACAAGT
TATGAACTAAGGCTTTGCAGACTCAAAAACACCCGACTTCTAAGAAAGTG
GGTAAAAATGGTCACAAAATTGAGAAAATAAGAACATTTTGAGAAAATTT
TTAGGCTTGAAAGCCAAAAATTTAAGAACATCGGAAGGCTTCAAAATTCT
GGATGTTCTGATAAAAAAACTTATAGTATATTTGTACACTTTTCCATTTT
AAATTGACAAACTTTTTTATAAGAAATGTGTTTTTTCATTTCATCATGGA
TATTCTTAACTTTTATGTTATCCTTAGGATTAGTAGCAAACTCCATGATG
GTGATATTCTTAGCATATTCTTAATTTTTTTGGCAAATTTCATCATGAAT
ATTTAAGAATAATAAAAGTATTTTCTTACAAAAAAATCGTGTAGGCTAAT
CTTAAACCTTCTCCATCGCCTTGAAAGCATAAGAAATCAAAAACTATTTC
ATTGGCTACAAAGTTCAAAGGAAAATGTATAATTTTTTTTGTCCTAAAAT
AAATCGTTAAGAGTGCCTGAACGGCTGAAACAATAATGATTATAATATGA
AAATATGAAAATCTTTTTTTTCTTAATTCCAAAGAAGCAAAAAGGGGATA
ATAACTGGCAATAACTAGCATCTTAGTGCAAATTTTCTCTATTTCAGTGA
CCAAAATCATTTAAAAAATGAAAACGAACATTAAAAAAATAGTTTTAACT
GTGTCACTCTATGGTATCATGGGATAGTATTGTGAGTTTATCTGGCTGTC
CTCAATAAATTGCACACCAAAACCACCCACACTGGATTTTTTTGAGCTGT
GGGAACAATAGAATTTCAATTCAGATTGGGATCTCGAATAAAATTTGACT
GCGAGACGCAATTTTCTTTTCCGTAAGCGGCCCAAGCCCTGATTTAGCGG
CTCAAGACCTGAATTACCGGGCCAAGACCTGGGAAACTTTGCGACTTTTG
AGACTTTTTTGGAAAAAGAAGATGAACGAACCGTTATATTCCCATGGAAA
AGTACTTCAATTTGATGATCTTTGATGATCTTCTAATGAATGTTTTTTAC
TAGTTTTTTAGAAATTTTAGGCCAATAATTCAGGTCTTGGGCCACTATAA
ATTCTAAAATCATGGCAAAAATCGTCTCAAAAATCGCAAAGTTTCCCAGG
TCTTGGGCCGGTAATTCAGGTCTTGGGTGACTTACGGAAAAAAAATTTGC
CTGCGAGACAGGGGTCAAGAATACTTTTATTCTCTGATTAATGAGATTAA
TTGAACTGGGTTTCGCAAAAAGTTACTGATTACATTTATACGCCCCTGTG
TCACAGACCCGCTGGGACTCCAGCCCCACTGGAAAATTTGGCAAAAAACT
TTCTCCTTGTGGGAAAATACCCTGGAATTTCAGCCCACTAAGAAATTGAC
TTTCATTTCATCCCCACTCGATAAATTTAAATTTTGCATTAAAAATTGCA
CTCCAAAATCAAAATCATCCCCACTGGATCTTTAAACCTTGGAACAATAT
AATTTCTATTCCCACTGATGAAAAAAAAATCCCATCGGGCCTGTGAGACA
GGGGTGTATTTATTTACTGTGATATACACACGGTCTTGGTACCCAGACTC
AAGATTTTCATTTTCAGTCCCCGTCAAGGAAAATCTTCCTTAACTTTCAT
AATTCAATCTCTCTGTAATTCGAACAAATAAGATTCCCCGTTTGAGTTCG
AATTAGCGAGAGTTTACTGCATTTTTTATAACCAATTTTTATTTTCTATA
ACAACTCAATACTGACCATTTTTTTCTATCTTTTTTAGAATGTTCGAAGT
CATTTTCAAGATGGTATCGTTCACTTATTCAGATTACCAAGCTCAAATGA
CATTTACTCAATGGAAACAAAAACGTAGACAAACCATGATTGCAATGTTA
TTGGTGAATCTAGTTGGTGGTATGGATATCAGCATCATATTGGCAACTAT
TGTACCATATCTTAGATATACCATCATTGTTCAGGATGTCAATGCATTTT
ACGCGTTTATCACTACAGCTTTTTGTGTTAGTTCAGCAGTGTTTGGAATC
ATATCTGGCAAGCTTGTTGATCGCACTAGACAAATGAAGATCTTCACCAG
TATAACGTTACTATTGCAGGTGGTTGGGAATCTAGTCTACACCATACCAA
TATCATCAGCTTTTCCTTTGGTTGGCAGACTCCTGGCAGGTGCTGGTGAA
AGTTTTACTGGTGTCTGTATCGGCGAAGTGATCAGAATCTACGACACCAA
AGGAAGCAATCGAATAATCTGTTGGCTAGCAATGATGAGCTCTTTTGGAT
ACGTCATAGGTCCTGTTATATCAATCCCATTATCAAAATGTCATTTCAAA
ATATACGAATTGCGAATTGATGGTTATAACATTGCTGGCGTTTTAATTGC
TATTTTATGTTCGCTTACCTTCATGTTATGCCAGTTTATGATGCATGATT
GCTCAAAAATCTTCGATATGAAAAGTCATCTAGCTGAGCAAGGGCTAGAG
GACGAACCAGAATCAATCGAAGATGAATTCTTTATCAACAACAACAATAA
CGAAGTGCTGTGTCATGAAGAAACATCTTCCTCTGAAGATGAAGATGAAA
ATATTGCCAAGGAGGAAGAAAGCTTGTTACCACAAAACTCAAAATCCAAA
CATTCAAATCCTTTCTGTTTTGCCAAGGATGAAGAAAGCTTATTACCACA
AAACTCAAAATCAAAACTTTCAAATCCTTTCTGTTTTGCTAAAGATAAAG
AAAGCTTATTACCTCAAAACTCAAAATCCAAACTTTCAAATCCTTTCTAT
TTTGTTAGAACATTCGATCAATGGATGGTACTAGTCTATTCCTTCATCAT
GATGTTTATAATCGCCAGTGGGGAATCTTTGATCCCACTTATCAACTATG
AGGTTATGAATTGGTCCTTAAACACACTTGTTATTATCTTTGTTGGTTAC
GGTATAGTGTTATTGGCAACTTCAATGCTGTTATCAAAAATCTGCACCGG
AGATGAATCAATCTATCGTGTAGGGTATGCTAGTTTCCCATGTGTTATAA
CCTTCTACTTAGCATTACTTCTTATGTCTTTGGACATTCGTAACAAAAAC
AGGGATATTTTCTACATGTTTTTATTCGTGCTTTCCCTCGTTTTTATATG
GTTTATGGAATCGATTGCAATGCGAAGTATGTTTGGTCGAATGGTGCCAT
CAGAGTTACAAAGCTTTGCTGAAGCCTTAAGAGCAGCTGTATCCAGATTT
GGTATGGTGGTGTCGAGTTTTGTATCACCTTTCCTGCTATCAGTTTTGAT
GTACTATTCAAGTTGCTTTCTCGTCGTAGGGGTTATAATGCTGGTGGTTT
ATATTGCAAGAAGGAAACAATTGACTGACATTCAGTTTACTAAACTTTAG
AACAGTCTAAATCATGGTCTCCTTTTAGCAGATGTTTTACTATAAAAGTT
AGTCTGGTAAGTTACTCGAGGTAAATGGCCATACGTGCGGCCCTTAAGGA
TATATTTTCCAAGCTTCCCGAAGTGCAATGTAAGGGTCCGATTTCAAAGG
CCTAATTTAGGGCCGCACGTATAGTCGTTTTGGAATTTACTATGAAACTG
CAGGTGGTATAAAGAGAAAGAATCTGTTGTATGAAAGGAGTTTAGGTTTA
GTAGAGGGTTCTATTAGTCCTTTTTCTTTTCTTTTCACCACTGTACTCTT
TTTAACTAACTTACCCAAAGTCGATTTTATTTCATAACCCCGCATTCTAC
GATTTTCAATTTTTGGTTTGTAAATATTTCAAAGAAGATTATAGAAATGT
TAAAGAAAAATGTATATTATTATAGGCCCATTAGTAAATAACAAATACAT
ATTGTTCATGTAG Coding sequence (CDS) from alignment at scaffold_309:554626..559638- >TCONS_00058296 ID=TCONS_00058296|Name=TCONS_00058296|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_309:554626..559638- (Clytia hemisphaerica)
ATGTTCGAAGTCATTTTCAAGATGGTATCGTTCACTTATTCAGATTACCA
AGCTCAAATGACATTTACTCAATGGAAACAAAAACGTAGACAAACCATGA
TTGCAATGTTATTGGTGAATCTAGTTGGTGGTATGGATATCAGCATCATA
TTGGCAACTATTGTACCATATCTTAGATATACCATCATTGTTCAGGATGT
CAATGCATTTTACGCGTTTATCACTACAGCTTTTTGTGTTAGTTCAGCAG
TGTTTGGAATCATATCTGGCAAGCTTGTTGATCGCACTAGACAAATGAAG
ATCTTCACCAGTATAACGTTACTATTGCAGGTGGTTGGGAATCTAGTCTA
CACCATACCAATATCATCAGCTTTTCCTTTGGTTGGCAGACTCCTGGCAG
GTGCTGGTGAAAGTTTTACTGGTGTCTGTATCGGCGAAGTGATCAGAATC
TACGACACCAAAGGAAGCAATCGAATAATCTGTTGGCTAGCAATGATGAG
CTCTTTTGGATACGTCATAGGTCCTGTTATATCAATCCCATTATCAAAAT
GTCATTTCAAAATATACGAATTGCGAATTGATGGTTATAACATTGCTGGC
GTTTTAATTGCTATTTTATGTTCGCTTACCTTCATGTTATGCCAGTTTAT
GATGCATGATTGCTCAAAAATCTTCGATATGAAAAGTCATCTAGCTGAGC
AAGGGCTAGAGGACGAACCAGAATCAATCGAAGATGAATTCTTTATCAAC
AACAACAATAACGAAGTGCTGTGTCATGAAGAAACATCTTCCTCTGAAGA
TGAAGATGAAAATATTGCCAAGGAGGAAGAAAGCTTGTTACCACAAAACT
CAAAATCCAAACATTCAAATCCTTTCTGTTTTGCCAAGGATGAAGAAAGC
TTATTACCACAAAACTCAAAATCAAAACTTTCAAATCCTTTCTGTTTTGC
TAAAGATAAAGAAAGCTTATTACCTCAAAACTCAAAATCCAAACTTTCAA
ATCCTTTCTATTTTGTTAGAACATTCGATCAATGGATGGTACTAGTCTAT
TCCTTCATCATGATGTTTATAATCGCCAGTGGGGAATCTTTGATCCCACT
TATCAACTATGAGGTTATGAATTGGTCCTTAAACACACTTGTTATTATCT
TTGTTGGTTACGGTATAGTGTTATTGGCAACTTCAATGCTGTTATCAAAA
ATCTGCACCGGAGATGAATCAATCTATCGTGTAGGGTATGCTAGTTTCCC
ATGTGTTATAACCTTCTACTTAGCATTACTTCTTATGTCTTTGGACATTC
GTAACAAAAACAGGGATATTTTCTACATGTTTTTATTCGTGCTTTCCCTC
GTTTTTATATGGTTTATGGAATCGATTGCAATGCGAAGTATGTTTGGTCG
AATGGTGCCATCAGAGTTACAAAGCTTTGCTGAAGCCTTAAGAGCAGCTG
TATCCAGATTTGGTATGGTGGTGTCGAGTTTTGTATCACCTTTCCTGCTA
TCAGTTTTGATGTACTATTCAAGTTGCTTTCTCGTCGTAGGGGTTATAAT
GCTGGTGGTTTATATTGCAAGAAGGAAACAATTGACTGACATTCAGTTTA
CTAAACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058296-exon-scaffold_309-1575043694:559428..559638 | TCONS_00058296-exon-scaffold_309-1575043694:559428..559638 | Clytia hemisphaerica | exon |
| TCONS_00058296-exon-scaffold_309-1575043694:554626..556700 | TCONS_00058296-exon-scaffold_309-1575043694:554626..556700 | Clytia hemisphaerica | exon |
| TCONS_00058296-exon-scaffold_309-1510915933:559428..559638 | TCONS_00058296-exon-scaffold_309-1510915933:559428..559638 | Clytia hemisphaerica | exon |
| TCONS_00058296-exon-scaffold_309-1510915933:554626..556700 | TCONS_00058296-exon-scaffold_309-1510915933:554626..556700 | Clytia hemisphaerica | exon |
| TCONS_00058296-exon-scaffold_309-1491911889:559428..559638 | TCONS_00058296-exon-scaffold_309-1491911889:559428..559638 | Clytia hemisphaerica | exon |
| TCONS_00058296-exon-scaffold_309-1491911889:554626..556700 | TCONS_00058296-exon-scaffold_309-1491911889:554626..556700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:554626..559638 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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