TCONS_00058295 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058295
Unique Name	TCONS_00058295
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2395

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_309:554626..557020-

transcript sequence

>TCONS_00058295 ID=TCONS_00058295|Name=TCONS_00058295|organism=Clytia hemisphaerica|type=transcript|length=2395bp
ccccactggatctttaaaccttggaacaatataatttctattcccactga
tgaaaaaaaaatcccatcgggcctgtgagacaggggtgtatttattTACT
GTGATATACACACGGTCTTGGTACCCAGACtcaagattttcattttcagt
ccccgtcaaggaaaATCTTCCTTAACTTTCATAATtcaatctctctgtaa
ttcgaacaaataagattccccgtttgagttcgaattagcgagagtttaCT
GCATTTTTTAtaaccaatttttattttctataacAACTCAATACTGACca
tttttttctatcttttttagAATGTTCGAAGTCATTTTCAAGATGGTATC
GTTCACTTATTCAGATTACCAAGCTCAAATGACATTTACTCAATGGAAAC
AAAAACGTAGACAAACCATGATTGCAATGTTATTGGTGAATCTAGTTGGT
GGTATGGATATCAGCATCATATTGGCAACTATTGTACCATATCTTAGATA
TACCATCATTGTTCAGGATGTCAATGCATTTTACGCGTTTATCACTACAG
CTTTTTGTGTTAGTTCAGCAGTGTTTGGAATCATATCTGGCAAGCTTGTT
GATCGCACTAGACAAATGAAGATCTTCACCAGTATAACGTTACTATTGCA
GGTGGTTGGGAATCTAGTCTACACCATACCAATATCATCAGCTTTTCCTT
TGGTTGGCAGACTCCTGGCAGGTGCTGGTGAAAGTTTTACTGGTGTCTGT
ATCGGCGAAGTGATCAGAATCTACGACACCAAAGGAAGCAATCGAATAAT
CTGTTGGCTAGCAATGATGAGCTCTTTTGGATACGTCATAGGTCCTGTTA
TATCAATCCCATTATCAAAATGTCATTTCAAAATATACGAATTGCGAATT
GATGGTTATAACATTGCTGGCgttttaattgctattttatgtTCGCTTAC
CTTCATGTTATGCCAGTTTATGATGCATGATTGCTCAAAAATCTTCGATA
TGAAAAGTCATCTAGCTGAGCAAGGGCTAGAGGACGAACCAGAATCAATC
GAAGATGAATTCTttatcaacaacaacaataacgAAGTGCTGTGTCATGA
AGAAACATCTTCctctgaagatgaagatgaaaatattgCCAAGGAGGAAG
AAAGCTTGTTACCACAAAACTCAAAATCCAAACATTCAAATCCTTTCTGT
TTTGCCAAGGATGAAGAAAGCTTATTACCACAAAactcaaaatcaaaact
ttcaaatccTTTCTGTTTTGCTAAAGATAAAGAAAGCTTATTACCTCAAA
ACTCAAAATCCAAACTTTCAAATCCTTTCTATTTTGTTAGAACATTCGAT
CAATGGATGGTACTAGTCTATTCCTTCATCATGATGTTTATAATCGCCAG
TGGGGAATCTTTGATCCCACTTATCAACTATGAGGTTATGAATTGGTCCT
TAAACACACTTGTTATTATCTTTGTTGGTTACGGTATAGTGTTATTGGCA
ACTTCAATGCTGTTATCAAAAATCTGCACCGGAGATGAATCAATCTATCG
TGTAGGGTATGCTAGTTTCCCATGTGTTATAACCTTCTACTTAGCATTAC
TTCTTATGTCTTTGGACATTCGTAACAAAAACAGGGATATTTTCTACATG
TTTTTATTCGTGCTTTCCCTCGTTTTTATATGGTTTATGGAATCGATTGC
AATGCGAAGTATGTTTGGTCGAATGGTGCCATCAGAGTTACAAAGCTTTG
CTGAAGCCTTAAGAGCAGCTGTATCCAGATTTGGTATGGTGGTGTCGAGT
TTTGTATCACCTTTCCTGCTATCAGTTTTGATGTACTATTCAAGTTGCTT
TCTCGTCGTAGGGGTTATAATGCTGGTGGTTTATATTGCAAGAAGGAAAC
AATTGACTGACATTCAGTTTACTAAACTTTAGAACAGTCTAAATCATGGT
CTCCTTTTAGCAGATGTTTTACTATAAAAGTTAGTCTGGTAAGTTACTCG
AGGTAAATGgccatacgtgcggcccttaaggatatattttccaagcttcc
cgaAGTGCaatgtaagggtccgatttcaaaggcctaatttaggGCCGCAC
GTATAGTCGTTTTGGAATTTACTATGAAACTGCAGGTGGTATAAAGAGAA
AGAATCTGTTGTATGAAAGGAGTTTAGGTTTAGTAGAGGGTTCTATTagt
cctttttcttttcttttcaccaCTGTACTCTTTTTAACTAACTTACCCAA
AGTCGATTTTATTTCATAACCCCGCATTCtacgattttcaatttttggtt
tgtaaatatttcaaagaaGATTATAGAAATGTTAAAGAAAAATGTATATT
ATTATAGGCCCATTAGTAAATAACAAATACATATTGTTCATGTAG

Run BLAST on NCBI

transcript from alignment at scaffold_309:554626..557020-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058295 ID=TCONS_00058295|Name=TCONS_00058295|organism=Clytia hemisphaerica|type=transcript|length=2395bp|location=Sequence derived from alignment at scaffold_309:554626..557020- (Clytia hemisphaerica)
CCCCACTGGATCTTTAAACCTTGGAACAATATAATTTCTATTCCCACTGA
TGAAAAAAAAATCCCATCGGGCCTGTGAGACAGGGGTGTATTTATTTACT
GTGATATACACACGGTCTTGGTACCCAGACTCAAGATTTTCATTTTCAGT
CCCCGTCAAGGAAAATCTTCCTTAACTTTCATAATTCAATCTCTCTGTAA
TTCGAACAAATAAGATTCCCCGTTTGAGTTCGAATTAGCGAGAGTTTACT
GCATTTTTTATAACCAATTTTTATTTTCTATAACAACTCAATACTGACCA
TTTTTTTCTATCTTTTTTAGAATGTTCGAAGTCATTTTCAAGATGGTATC
GTTCACTTATTCAGATTACCAAGCTCAAATGACATTTACTCAATGGAAAC
AAAAACGTAGACAAACCATGATTGCAATGTTATTGGTGAATCTAGTTGGT
GGTATGGATATCAGCATCATATTGGCAACTATTGTACCATATCTTAGATA
TACCATCATTGTTCAGGATGTCAATGCATTTTACGCGTTTATCACTACAG
CTTTTTGTGTTAGTTCAGCAGTGTTTGGAATCATATCTGGCAAGCTTGTT
GATCGCACTAGACAAATGAAGATCTTCACCAGTATAACGTTACTATTGCA
GGTGGTTGGGAATCTAGTCTACACCATACCAATATCATCAGCTTTTCCTT
TGGTTGGCAGACTCCTGGCAGGTGCTGGTGAAAGTTTTACTGGTGTCTGT
ATCGGCGAAGTGATCAGAATCTACGACACCAAAGGAAGCAATCGAATAAT
CTGTTGGCTAGCAATGATGAGCTCTTTTGGATACGTCATAGGTCCTGTTA
TATCAATCCCATTATCAAAATGTCATTTCAAAATATACGAATTGCGAATT
GATGGTTATAACATTGCTGGCGTTTTAATTGCTATTTTATGTTCGCTTAC
CTTCATGTTATGCCAGTTTATGATGCATGATTGCTCAAAAATCTTCGATA
TGAAAAGTCATCTAGCTGAGCAAGGGCTAGAGGACGAACCAGAATCAATC
GAAGATGAATTCTTTATCAACAACAACAATAACGAAGTGCTGTGTCATGA
AGAAACATCTTCCTCTGAAGATGAAGATGAAAATATTGCCAAGGAGGAAG
AAAGCTTGTTACCACAAAACTCAAAATCCAAACATTCAAATCCTTTCTGT
TTTGCCAAGGATGAAGAAAGCTTATTACCACAAAACTCAAAATCAAAACT
TTCAAATCCTTTCTGTTTTGCTAAAGATAAAGAAAGCTTATTACCTCAAA
ACTCAAAATCCAAACTTTCAAATCCTTTCTATTTTGTTAGAACATTCGAT
CAATGGATGGTACTAGTCTATTCCTTCATCATGATGTTTATAATCGCCAG
TGGGGAATCTTTGATCCCACTTATCAACTATGAGGTTATGAATTGGTCCT
TAAACACACTTGTTATTATCTTTGTTGGTTACGGTATAGTGTTATTGGCA
ACTTCAATGCTGTTATCAAAAATCTGCACCGGAGATGAATCAATCTATCG
TGTAGGGTATGCTAGTTTCCCATGTGTTATAACCTTCTACTTAGCATTAC
TTCTTATGTCTTTGGACATTCGTAACAAAAACAGGGATATTTTCTACATG
TTTTTATTCGTGCTTTCCCTCGTTTTTATATGGTTTATGGAATCGATTGC
AATGCGAAGTATGTTTGGTCGAATGGTGCCATCAGAGTTACAAAGCTTTG
CTGAAGCCTTAAGAGCAGCTGTATCCAGATTTGGTATGGTGGTGTCGAGT
TTTGTATCACCTTTCCTGCTATCAGTTTTGATGTACTATTCAAGTTGCTT
TCTCGTCGTAGGGGTTATAATGCTGGTGGTTTATATTGCAAGAAGGAAAC
AATTGACTGACATTCAGTTTACTAAACTTTAGAACAGTCTAAATCATGGT
CTCCTTTTAGCAGATGTTTTACTATAAAAGTTAGTCTGGTAAGTTACTCG
AGGTAAATGGCCATACGTGCGGCCCTTAAGGATATATTTTCCAAGCTTCC
CGAAGTGCAATGTAAGGGTCCGATTTCAAAGGCCTAATTTAGGGCCGCAC
GTATAGTCGTTTTGGAATTTACTATGAAACTGCAGGTGGTATAAAGAGAA
AGAATCTGTTGTATGAAAGGAGTTTAGGTTTAGTAGAGGGTTCTATTAGT
CCTTTTTCTTTTCTTTTCACCACTGTACTCTTTTTAACTAACTTACCCAA
AGTCGATTTTATTTCATAACCCCGCATTCTACGATTTTCAATTTTTGGTT
TGTAAATATTTCAAAGAAGATTATAGAAATGTTAAAGAAAAATGTATATT
ATTATAGGCCCATTAGTAAATAACAAATACATATTGTTCATGTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036721	XLOC_036721	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058295-exon-scaffold_309-1575043694:554626..557020	TCONS_00058295-exon-scaffold_309-1575043694:554626..557020	Clytia hemisphaerica	exon
TCONS_00058295-exon-scaffold_309-1510915933:554626..557020	TCONS_00058295-exon-scaffold_309-1510915933:554626..557020	Clytia hemisphaerica	exon
TCONS_00058295-exon-scaffold_309-1491911889:554626..557020	TCONS_00058295-exon-scaffold_309-1491911889:554626..557020	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_309	supercontig	scaffold_309:554626..557020 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0649181	0.0949581	0.0918795	0.21577	0	0.0691798	0	0.712945	0	0	0	1.73416	0.22692	0.448377	0.082973	0.0296802	0	0	0.691993	0.162411	0.314696	0.495666	0	0	0.349388	0	0.51184	0.379999	0.0180135	0.0550587

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058295 vs. Swiss-Prot (Human)

BLAST of TCONS_00058295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058295 (transcript) - C. hemisphaerica