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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058281 ID=TCONS_00058281|Name=TCONS_00058281|organism=Clytia hemisphaerica|type=transcript|length=1008bp
CTtacttttcagaaaatttgattgatttgaaaaaaagataagaaataaaa
ataaaaatgttatttgCTTGATTCACAACAAAGAAGTGGAGTATGGGTTT
TTTGAACATACAAACATTACAACTGGTCAATGATGAAGATATATCTTGCA
ATGTTTACATCGTCAAAAAGGGTTGGACACTGCACTTTTTACTAGATCCT
GTGCTCGATTCAAAAGTTACCACATTTTACTGCAATCATCCAGTATCTGC
TTCTGAAGAGTACAATCATGAAACATTCCATAATTACCAATGGACAAGTC
ATCATAATGACATCTTATTCCCGGACAGTTATGCTCAAGTAGAAATCAAA
AGAGCcggtgttttcaaattttatttagaATCTGAAAACAAGGAAAGATG
TTGTAATGGATTCTTTATTGTCCAGCCTGATTTGTATTTTGATTCTGGCA
ATGTTATGGATATCCAAAGTGTCACCATGCAAACTGTTCTTACCAAATGC
CTTGGTAAGTTTGCTGGTTGGAAAGGTAGACTCCAAGTAGCGCGAGAATG
TAATTACAATACAATTCATTTCACACCCATTCAAGAACTCGGCGAATCAG
ATTCCAGTTACTCCATCCGTGATCACCACGGATTGGATCCACGGTACGGA
AATGATTTCACCGAATCTAATTTGGAAGCTTTTGTCCTGAATCTGCATAA
ATCATGGAATATGTTTTCAATAGtTGATGTAGTTTGGAATCACGTTGCCA
ACGATTGCAAATGGATTACAGAGCATCCAGAAGCATCCTACAATCTGGTG
AACACACCTCATTTGCGACCAGCCTTTCTGGTAGATCGCTTATTATGGTA
TTTCAACAAAGAAATTATCGACAATCAGTGGAAGGATGAAGGATTACCTA
ATTTCATTTCAGAACAATCTCATTTGGAATCACTTGAAAAGATTTTGAGG
AAGAAGCTATTGGATTTACGTCTTGAAGAATTCTACATGGTTGACATTAA
AGAAGACT Run BLAST on NCBI protein sequence of TCONS_00058281-protein >TCONS_00058281-protein ID=TCONS_00058281-protein|Name=TCONS_00058281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MGFLNIQTLQLVNDEDISCNVYIVKKGWTLHFLLDPVLDSKVTTFYCNHP
VSASEEYNHETFHNYQWTSHHNDILFPDSYAQVEIKRAGVFKFYLESENK
ERCCNGFFIVQPDLYFDSGNVMDIQSVTMQTVLTKCLGKFAGWKGRLQVA
RECNYNTIHFTPIQELGESDSSYSIRDHHGLDPRYGNDFTESNLEAFVLN
LHKSWNMFSIVDVVWNHVANDCKWITEHPEASYNLVNTPHLRPAFLVDRL
LWYFNKEIIDNQWKDEGLPNFISEQSHLESLEKILRKKLLDLRLEEFYMV
DIKED Run BLAST on NCBI transcript from alignment at scaffold_309:315026..317259- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058281 ID=TCONS_00058281|Name=TCONS_00058281|organism=Clytia hemisphaerica|type=transcript|length=2234bp|location=Sequence derived from alignment at scaffold_309:315026..317259- (Clytia hemisphaerica)
CTTACTTTTCAGAAAATTTGATTGATTTGAAAAAAAGATAAGAAATAAAA
ATAAAAATGTTATTTGCTTGATTCACAACAAAGAAGTGGAGTATGGGTTT
TTTGAACATACAAACATTACAACTGGTCAATGATGAAGATATATCTTGCA
ATGTTTACATCGTCAAAAAGGGTATGTTTCAATCCATTCAATACTACAAA
TTGCCAATTTTACAAAGCAAATTACTACAGATATTTTCCTTTTACCTTCT
TTGTAAGGGGATAAAGTTAAGGGGAAATGCACTCAATAAAGTGCAGCTAC
ATACTTGTGTAATATTTTTTTCAAAAAAGGCTTTTTTAGTATATAGATTG
ATTCCATGTGACGTCATTTTCACCCACAATTGGCCATTTTTCTTAGGAAT
GATAATTGATAGAAAGAATATGTTAAAGGATGATTTAGTAACACCTTGAT
AGCTCACAATAATCAAATATATGTTATTTCAGGTTGGACACTGCACTTTT
TACTAGATCCTGTGCTCGATTCAAAAGTTACCACATTTTACTGCAATCAT
CCAGTATCTGCTTCTGAAGAGTACAATCATGAAACATTCCATAATTACCA
ATGGACAAGTCATCATAATGACATCTTATTCCCGGACAGTTATGCTCAAG
TAGAAATCAAAAGAGCCGGTGTTTTCAAATTTTATTTAGAATCTGAAAAC
AAGGAAAGATGTTGTAATGGATTCTTTATTGTCCAGCCTGATTTGTATTT
TGATTCTGGCAATGTTATGGATATCCAAAGTGTCACCATGCAAACTGTTC
TTACCAAATGCCTTGGTAAGTTTGCTGGTTGGAAAGGTAGACTCCAAGTA
GCGCGAGAATGTAATTACAATACAATTCATTTCACACCCATTCAAGAACT
CGGCGAATCAGATTCCAGTTACTCCATCCGTGATCACCACGGATTGGATC
CACGGTACGGAAATGATTTCACCGAATCTAATTTGGAAGCTTTTGTCCTG
AATCTGCATAAATCATGGAATATGTTTTCAATAGGTGAGTCTATCTGAGT
GTTTGTGTGTATTCCCATTTGTTTTTGCATTGGAATAATAGAATAATAGA
TTTTGTTTTGATTTAAACAAGTTGATGGTGGCTAATTAAATTTAGCAAAA
TAGTATTCATTTAATAATTGGTAACAAAACGTTGGTCCCAGCACCTTCTG
TACAAAACTAAAAGTTAAATTACCGATGTGCAGAATTAAAAGTTGAAGTA
TCATCGAAATTTGAAGAGAACTTTATCCCCCAAATATTTTCATGCAATAA
AATACAAATTTGCTCATGATTTTTTATTTTAACTCGAACCTTTTTTAAGA
GATCCTCCAGTAGTTGTATTCGGTAGTTTCTCCATTCTAAACCTACATTT
TCTCCTTTTTTAGTTGATGTAGTTTGGAATCACGTTGCCAACGATTGCAA
ATGGATTACAGAGCATCCAGAAGCATCCTACAATCTGGTGAACACACCTC
ATTTGCGACCAGCCTTTCTGGTAGATCGCTTATTATGGTATTTCAACAAA
GAAATTATCGACAATCAGTGGAAGGATGAAGGATTACCTAATTTCATTTC
AGAACAATCTCATTTGGAATCACTTGAAAAGATTTTGAGGTAAGTGAGGC
CGTTTATTTTGGCTAGGTAAAGTATACACTGTCTTCTGTTTTTAACACTT
TTCAAGTTATAAAGTTGGTGCTGAAAAAAAAACGGACTGAATTCTTATCT
TTGTGAAGTAAAATGTGAATCTCAAATTTATATATCGAAAGGGAAACACT
TCGCTTTGAACTTCTGGTTTCAGGGATTTTTCTAAGCACTTTGAGCGGGG
GCCGTTTTTGTAAACTTAGATTTCAAGAATTTCTAATATGCCTGAAAGGG
AACTTGCTCAGAAAAGCTGTACATTGATGAAGCTGGGGGTCTTGTGAGTG
TTCGGGCGAAGCTCCAAAAAACTCATGAATGTAGATAATATATATTATTG
TTGCTCATAAACAGCAAAAATGGTTAATTTCGCTAGAAAAAATCTCATTT
TTTTAGATTGAGTACTCCTTATTTGAAATCTTTTCCAAGGATCTTTGGTA
GGTTAGGCGATCGGATCGAATTCTATATCTATCAATTCCTTCATAATTAA
ATATTTTTTGACATTTTCACTACAGGAAGAAGCTATTGGATTTACGTCTT
GAAGAATTCTACATGGTTGACATTAAAGAAGACT Coding sequence (CDS) from alignment at scaffold_309:315026..317259- >TCONS_00058281 ID=TCONS_00058281|Name=TCONS_00058281|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_309:315026..317259- (Clytia hemisphaerica)
GAAGAAGCTATTGGATTTACGTCTTGAAGAATTCTACATGGTTGACATTA
AAGAAGACTTGATGTAGTTTGGAATCACGTTGCCAACGATTGCAAATGGA
TTACAGAGCATCCAGAAGCATCCTACAATCTGGTGAACACACCTCATTTG
CGACCAGCCTTTCTGGTAGATCGCTTATTATGGTATTTCAACAAAGAAAT
TATCGACAATCAGTGGAAGGATGAAGGATTACCTAATTTCATTTCAGAAC
AATCTCATTTGGAATCACTTGAAAAGATTTTGAGGTTGGACACTGCACTT
TTTACTAGATCCTGTGCTCGATTCAAAAGTTACCACATTTTACTGCAATC
ATCCAGTATCTGCTTCTGAAGAGTACAATCATGAAACATTCCATAATTAC
CAATGGACAAGTCATCATAATGACATCTTATTCCCGGACAGTTATGCTCA
AGTAGAAATCAAAAGAGCCGGTGTTTTCAAATTTTATTTAGAATCTGAAA
ACAAGGAAAGATGTTGTAATGGATTCTTTATTGTCCAGCCTGATTTGTAT
TTTGATTCTGGCAATGTTATGGATATCCAAAGTGTCACCATGCAAACTGT
TCTTACCAAATGCCTTGGTAAGTTTGCTGGTTGGAAAGGTAGACTCCAAG
TAGCGCGAGAATGTAATTACAATACAATTCATTTCACACCCATTCAAGAA
CTCGGCGAATCAGATTCCAGTTACTCCATCCGTGATCACCACGGATTGGA
TCCACGGTACGGAAATGATTTCACCGAATCTAATTTGGAAGCTTTTGTCC
TGAATCTGCATAAATCATGGAATATGTTTTCAATAGATGGGTTTTTTGAA
CATACAAACATTACAACTGGTCAATGATGAAGATATATCTTGCAATGTTT
ACATCGTCAAAAAGGGAAGAAGCTATTGGATTTACGTCTTGAAGAATTCT
ACATGGTTGACATTAAAGAAGACTTGATGTAGTTTGGAATCACGTTGCCA
ACGATTGCAAATGGATTACAGAGCATCCAGAAGCATCCTACAATCTGGTG
AACACACCTCATTTGCGACCAGCCTTTCTGGTAGATCGCTTATTATGGTA
TTTCAACAAAGAAATTATCGACAATCAGTGGAAGGATGAAGGATTACCTA
ATTTCATTTCAGAACAATCTCATTTGGAATCACTTGAAAAGATTTTGAGG
TTGGACACTGCACTTTTTACTAGATCCTGTGCTCGATTCAAAAGTTACCA
CATTTTACTGCAATCATCCAGTATCTGCTTCTGAAGAGTACAATCATGAA
ACATTCCATAATTACCAATGGACAAGTCATCATAATGACATCTTATTCCC
GGACAGTTATGCTCAAGTAGAAATCAAAAGAGCCGGTGTTTTCAAATTTT
ATTTAGAATCTGAAAACAAGGAAAGATGTTGTAATGGATTCTTTATTGTC
CAGCCTGATTTGTATTTTGATTCTGGCAATGTTATGGATATCCAAAGTGT
CACCATGCAAACTGTTCTTACCAAATGCCTTGGTAAGTTTGCTGGTTGGA
AAGGTAGACTCCAAGTAGCGCGAGAATGTAATTACAATACAATTCATTTC
ACACCCATTCAAGAACTCGGCGAATCAGATTCCAGTTACTCCATCCGTGA
TCACCACGGATTGGATCCACGGTACGGAAATGATTTCACCGAATCTAATT
TGGAAGCTTTTGTCCTGAATCTGCATAAATCATGGAATATGTTTTCAATA
GATGGGTTTTTTGAACATACAAACATTACAACTGGTCAATGATGAAGATA
TATCTTGCAATGTTTACATCGTCAAAAAGGGAAGAAGCTATTGGATTTAC
GTCTTGAAGAATTCTACATGGTTGACATTAAAGAAGACTTGATGTAGTTT
GGAATCACGTTGCCAACGATTGCAAATGGATTACAGAGCATCCAGAAGCA
TCCTACAATCTGGTGAACACACCTCATTTGCGACCAGCCTTTCTGGTAGA
TCGCTTATTATGGTATTTCAACAAAGAAATTATCGACAATCAGTGGAAGG
ATGAAGGATTACCTAATTTCATTTCAGAACAATCTCATTTGGAATCACTT
GAAAAGATTTTGAGGTTGGACACTGCACTTTTTACTAGATCCTGTGCTCG
ATTCAAAAGTTACCACATTTTACTGCAATCATCCAGTATCTGCTTCTGAA
GAGTACAATCATGAAACATTCCATAATTACCAATGGACAAGTCATCATAA
TGACATCTTATTCCCGGACAGTTATGCTCAAGTAGAAATCAAAAGAGCCG
GTGTTTTCAAATTTTATTTAGAATCTGAAAACAAGGAAAGATGTTGTAAT
GGATTCTTTATTGTCCAGCCTGATTTGTATTTTGATTCTGGCAATGTTAT
GGATATCCAAAGTGTCACCATGCAAACTGTTCTTACCAAATGCCTTGGTA
AGTTTGCTGGTTGGAAAGGTAGACTCCAAGTAGCGCGAGAATGTAATTAC
AATACAATTCATTTCACACCCATTCAAGAACTCGGCGAATCAGATTCCAG
TTACTCCATCCGTGATCACCACGGATTGGATCCACGGTACGGAAATGATT
TCACCGAATCTAATTTGGAAGCTTTTGTCCTGAATCTGCATAAATCATGG
AATATGTTTTCAATAGATGGGTTTTTTGAACATACAAACATTACAACTGG
TCAATGATGAAGATATATCTTGCAATGTTTACATCGTCAAAAAGGGAAGA
AGCTATTGGATTTACGTCTTGAAGAATTCTACATGGTTGACATTAAAGAA
GACTTGATGTAGTTTGGAATCACGTTGCCAACGATTGCAAATGGATTACA
GAGCATCCAGAAGCATCCTACAATCTGGTGAACACACCTCATTTGCGACC
AGCCTTTCTGGTAGATCGCTTATTATGGTATTTCAACAAAGAAATTATCG
ACAATCAGTGGAAGGATGAAGGATTACCTAATTTCATTTCAGAACAATCT
CATTTGGAATCACTTGAAAAGATTTTGAGGTTGGACACTGCACTTTTTAC
TAGATCCTGTGCTCGATTCAAAAGTTACCACATTTTACTGCAATCATCCA
GTATCTGCTTCTGAAGAGTACAATCATGAAACATTCCATAATTACCAATG
GACAAGTCATCATAATGACATCTTATTCCCGGACAGTTATGCTCAAGTAG
AAATCAAAAGAGCCGGTGTTTTCAAATTTTATTTAGAATCTGAAAACAAG
GAAAGATGTTGTAATGGATTCTTTATTGTCCAGCCTGATTTGTATTTTGA
TTCTGGCAATGTTATGGATATCCAAAGTGTCACCATGCAAACTGTTCTTA
CCAAATGCCTTGGTAAGTTTGCTGGTTGGAAAGGTAGACTCCAAGTAGCG
CGAGAATGTAATTACAATACAATTCATTTCACACCCATTCAAGAACTCGG
CGAATCAGATTCCAGTTACTCCATCCGTGATCACCACGGATTGGATCCAC
GGTACGGAAATGATTTCACCGAATCTAATTTGGAAGCTTTTGTCCTGAAT
CTGCATAAATCATGGAATATGTTTTCAATAGATGGGTTTTTTGAACATAC
AAACATTACAACTGGTCAATGATGAAGATATATCTTGCAATGTTTACATC
GTCAAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058281-exon-scaffold_309-1575043694:317089..317259 | TCONS_00058281-exon-scaffold_309-1575043694:317089..317259 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1575043694:316226..316777 | TCONS_00058281-exon-scaffold_309-1575043694:316226..316777 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1575043694:315621..315846 | TCONS_00058281-exon-scaffold_309-1575043694:315621..315846 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1575043694:315026..315084 | TCONS_00058281-exon-scaffold_309-1575043694:315026..315084 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1510915933:317089..317259 | TCONS_00058281-exon-scaffold_309-1510915933:317089..317259 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1510915933:316226..316777 | TCONS_00058281-exon-scaffold_309-1510915933:316226..316777 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1510915933:315621..315846 | TCONS_00058281-exon-scaffold_309-1510915933:315621..315846 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1510915933:315026..315084 | TCONS_00058281-exon-scaffold_309-1510915933:315026..315084 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1491911889:317089..317259 | TCONS_00058281-exon-scaffold_309-1491911889:317089..317259 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1491911889:316226..316777 | TCONS_00058281-exon-scaffold_309-1491911889:316226..316777 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1491911889:315621..315846 | TCONS_00058281-exon-scaffold_309-1491911889:315621..315846 | Clytia hemisphaerica | exon |
| TCONS_00058281-exon-scaffold_309-1491911889:315026..315084 | TCONS_00058281-exon-scaffold_309-1491911889:315026..315084 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:315026..317259 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058281 vs. Swiss-Prot (Human)
Match: GDE (Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3) HSP 1 Score: 209.534 bits (532), Expect = 1.359e-59 Identity = 107/279 (38.35%), Postives = 164/279 (58.78%), Query Frame = 3
Query: 108 IQTLQLVNDEDISCNVYIVKKGWTLHFLLDPVLDSKVTTFYCNHPVSASEEYNHETFHNYQWTSHHNDILFPDSYAQVEIKRAGVFKFYLESENKERCCNGFFIVQPDLYFDSGN-VMDIQSVTMQTVLTKCLGKFAGWKGRLQVARECNYNTIHFTPIQELGESDSSYSIRDHHGLDP---RYGNDFTESNLEAFVLNLHKSWNMFSIVDVVWNHVANDCKWITEHPEASYNLVNTPHLRPAFLVDRLLWYFNKEIIDNQWKDEGLPNFISEQSHLES 932
I+ L L E + ++ +++G+ L F L P L K T Y N+P E +N E F + W + D Y ++ ++++G F++Y N E+ G+ +V P L + N V+ + VT+QT L KCLG F W+ RL+VA+E YN IHFTP+Q LG S S YS+ + L+P R +T +++ V L K WN+ I DVV+NH A + KWI EHPE +YNLVN+PHL+PA+++DR LW F+ ++ + ++K++G+P I H+ S
Sbjct: 7 IRILLLNEMEKLEKTLFRLEQGYELQFRLGPTLQGKAVTVYTNYPFPG-ETFNREKFRSLDWENPTEREDDSDKYCKLNLQQSGSFQYYFLQGN-EKSGGGYIVVDPILRVGADNHVLPLDCVTLQTFLAKCLGPFDEWESRLRVAKESGYNMIHFTPLQTLGLSRSCYSLANQLELNPDFSRPNRKYTWNDVGQLVEKLKKEWNVICITDVVYNHTAANSKWIQEHPECAYNLVNSPHLKPAWVLDRALWRFSCDVAEGKYKEKGIPALIENDHHMNS 283
The following BLAST results are available for this feature:
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