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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058190 ID=TCONS_00058190|Name=TCONS_00058190|organism=Clytia hemisphaerica|type=transcript|length=1725bp
GTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaaaattgtc
TGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAGAAAGCGG
TCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATCCAATTGTTT
GATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGA
AAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGC
GAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTAT
CCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTT
AGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCC
ATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATC
ATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCT
CGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTTTAGGATATA
TTCCCCTCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAAT
TTGATTTCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTAT
CTTACCACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCT
TACTATCTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAAT
GCATTTTTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAG
CCTTAATGCTAACGCTGCAGCCTTCATCTTCAGATATACACCGATCCTTG
TGAATCACGTGATCAGTTCAACCTCATACGTCATCTCGCTCTACGTCAGT
CTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGCAAATCAA
GTTGTCCAATAAAATCTCTCAATAAATGAATAACTGTTTTACCGTAtaaa
tttttgtatatattttcaaagaattatggataataacttttttttaaaca
caTTGGATATTTTTAAACACATTTTGGATTATTTGACACGTATATATTTT
ATTGATGAGAACACGATGAGAACAATTTTTGATCCTTAAATCGGTCAGAT
AGAACACACATGAAACAAGACGAAAAGGACGACGGAAACTTTACAATGGA
CTTCTTCACGATAACGACACAGTATCAAAATTTGCGAGGAACATTACCAG
ACAAAACTACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAATA
TGCAAAAACGCGGCGATTCNCGAGGAACATTACCAGACAAAACTACTAAG
ACAAAGCAGAAATCAATAGACGAACATACGGTAATGTGCAAAAACGCGGC
GATTCACTGGGAACATTATATACCAGACATATTGAATAAATCTTGACTCC
TTGACTGTTTAATGCATATAATCGAGATCAAAATAATTTGGTGGAACGGA
TCGACAGAGACGTTAAGCTAAAGAATAAAGAAACAGAAAGATTTGTCAGG
ATATTCACGAAGGGCTAAAAATCAAACAGCAAACAAGATTTGAATCCTGG
TTGCTCTATGACACTAACTTTTGGTGAAACGGGTTTGCTGGAATAGGCGA
AAGGATAAAAATTGTAATTCAGAAGGGAAAGAGTTCTCACCAGAAAGGAG
CTTGTATATTGTATTGTAAATAAAT Run BLAST on NCBI transcript from alignment at scaffold_308:60946..63927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058190 ID=TCONS_00058190|Name=TCONS_00058190|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at scaffold_308:60946..63927+ (Clytia hemisphaerica)
GTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaaaattgtc
TGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAGAAAGCGG
TCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGTATATGAAT
TATGATTATTGCTTCGAAATCATCGGGTAAGTTAAACTCCTCTAATAATC
TTAAAATGTTATCCTCTTCCTCCCAATTTTAGTTTTGAGAGCGGCGTCGA
CACAACGTGGTAAGCCCTCCTTCCAGATGCCTACCCCAAACTTATATAAG
ACAATGACATTAGATTCTATTGAAAAGAATTTATCATTatattatctttt
ttatttattaaatagaatttattattttattattgtttAGCCAATTGTTT
GATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGA
AAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGC
GAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTAT
CCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTT
AGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCC
ATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATC
ATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCT
CGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTTTAGGGTATG
TCATTGCCAACAATGCTTTCTGATACatgctaaatatttttacaagcaTT
TTGGTAAATAAACGTATATATAAGGGAATGAACGAACCGGAAGGAATAGC
TAGCTCATTAGGTTTGGCGTGCGCTTCACCATACAAGAGGGTCCCCATAC
AAAGGGGGCAATTGTCAATCATCAACGTTCTCCTTGGAAGataatgaatg
aaaaagtttcttCTCGATCGGTCTCAAGGAGTTTGATGCACAGAAGTTAT
TAGTTACTAAATGATTGCTGAGAGCAGGCCCGAATCAGTGATAACTCAAC
TGCATAGTTAGCGCAAGCTACAACTTGGAATTTGGTGTTTGCTAGTCAta
caaacaaaaatataaaataatatcAACGTCCATCAAACCTCTAGATGTGA
GACAGTAGCCCGATAATTGAATTCTCATTTCTATTTTAGATATATTCCCC
TCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAATTTGATT
TCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTATCTTACC
ACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCTTACTAT
CTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAATGCATTT
TTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAGCCTTAA
TGCTAACGCTGCAGCCTTCATCTTCAGGTAAGGGCTTTCTACCAATTTAC
TTTGCTTTCTTTGACAGCTGATGGAAAAGCGTATGAATCCCTACCCAAAT
CAGACAAGATTAATTAACTCAaacctctactattcgaatctttcaaataa
ttcgaacaaaaatattggtCGTCTCAGCTAGAAAGTAGTATAtaatactc
tctgtaatttgGATCCTTTTCtatttcgaagaaaattcttggttccttcc
cagctggcacacaacgtcgtttcaacgttcatctaacgttagatggacgt
tgaaacaacgttgtgtgccagctgggttaaaGATCGAATTGgaaagagtc
aactgtattttatTTGAAGTTATAAGCTGCTATtggttgtgaacattaga
tggacgttgaaacaacgttgtgtgccagctgggttaaagatcgaattgga
gagagtcaactgtattttatTTGAAGTTATAAGCTGCTATTGGTTTTGGG
AATCTCATCCAATTTATTTTCTCCTTATAGATATANTTATAAGCTGCTCT
TGGTTTTGGGAATCTCATCCAATTTATTTTCTCCTTATAGATATACACCG
ATCCTTGTGAATCACGTGATCAGTTCAACCTCATACGTCATCTCGCTCTA
CGTCAGTCTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGC
AAATCAAGTTGTCCAATAAAATCTCTCAATAAATGAATAACTGTTTTACC
GTAtaaatttttgtatatattttcaaagaattatggataataactttttt
ttaaacacaTTGGATATTTTTAAACACATTTTGGATTATTTGACACGTAT
ATATTTTATTGATGAGAACACGATGAGAACAATTTTTGATCCTTAAATCG
GTCAGATAGAACACACATGAAACAAGACGAAAAGGACGACGGAAACTTTA
CAATGGACTTCTTCACGATAACGACACAGTATCAAAATTTGCGAGGAACA
TTACCAGACAAAACTACTAAGACAAAGCAGAAATCAATAGACGAACATAC
GGTAATATGCAAAAACGCGGCGATTCNCGAGGAACATTACCAGACAAAAC
TACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAATGTGCAAAA
ACGCGGCGATTCACTGGGAACATTATATACCAGACATATTGAATAAATCT
TGACTCCTTGACTGTTTAATGCATATAATCGAGATCAAAATAATTTGGTG
GAACGGATCGACAGAGACGTTAAGCTAAAGAATAAAGAAACAGAAAGATT
TGTCAGGATATTCACGAAGGGCTAAAAATCAAACAGCAAACAAGATTTGA
ATCCTGGTTGCTCTATGACACTAACTTTTGGTGAAACGGGTTTGCTGGAA
TAGGCGAAAGGATAAAAATTGTAATTCAGAAGGGAAAGAGTTCTCACCAG
AAAGGAGCTTGTATATTGTATTGTAAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058190-exon-scaffold_308-1491911889:60946..61085 | TCONS_00058190-exon-scaffold_308-1491911889:60946..61085 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1510915933:60946..61085 | TCONS_00058190-exon-scaffold_308-1510915933:60946..61085 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1575043694:60946..61085 | TCONS_00058190-exon-scaffold_308-1575043694:60946..61085 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1491911889:61336..61740 | TCONS_00058190-exon-scaffold_308-1491911889:61336..61740 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1510915933:61336..61740 | TCONS_00058190-exon-scaffold_308-1510915933:61336..61740 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1575043694:61336..61740 | TCONS_00058190-exon-scaffold_308-1575043694:61336..61740 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1491911889:62185..62472 | TCONS_00058190-exon-scaffold_308-1491911889:62185..62472 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1510915933:62185..62472 | TCONS_00058190-exon-scaffold_308-1510915933:62185..62472 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1575043694:62185..62472 | TCONS_00058190-exon-scaffold_308-1575043694:62185..62472 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1491911889:63036..63927 | TCONS_00058190-exon-scaffold_308-1491911889:63036..63927 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1510915933:63036..63927 | TCONS_00058190-exon-scaffold_308-1510915933:63036..63927 | Clytia hemisphaerica | exon |
| TCONS_00058190-exon-scaffold_308-1575043694:63036..63927 | TCONS_00058190-exon-scaffold_308-1575043694:63036..63927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:60946..63927 + |
Blast
The following BLAST results are available for this feature:
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