TCONS_00058181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058181
Unique NameTCONS_00058181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058181 ID=TCONS_00058181|Name=TCONS_00058181|organism=Clytia hemisphaerica|type=transcript|length=415bp
attttaaaaataagggaattgatccaaaaaattgtcaaaaatctaaattg
cTTTTCTactgcaccccaaaatgtaggtgtATTTTTGCGTGTTTGCAgaa
aaattacatcaaaatttatgtttttttgtaaaaaagtttttaaccggAGA
CCTTTTGtcaaattatcaaaagaaaccTAAAAGTTTTGCTTCGCTTGGTG
TTTTAAAGTAGCATTTTAATCAGTTTTAGTTCCGTTTTTCACGGAAAAAT
TGCTACTTTTTGACGTTTTTGACGTCAGTTTTGTCAAAATTTCGAAAAAT
GAGGGTGCTTCAAAATGGAATATCTTTTATTGGGTTTGAGCTACCGGCAT
AAAATTTTGACACAATGTTCAGGATAAACAGGGCTTTAAAGTCGACCCTA
GTTTTTAGGACTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_307:186257..186671

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058181 ID=TCONS_00058181|Name=TCONS_00058181|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_307:186257..186671 (Clytia hemisphaerica)
ATAAGTCCTAAAAACTAGGGTCGACTTTAAAGCCCTGTTTATCCTGAACA
TTGTGTCAAAATTTTATGCCGGTAGCTCAAACCCAATAAAAGATATTCCA
TTTTGAAGCACCCTCATTTTTCGAAATTTTGACAAAACTGACGTCAAAAA
CGTCAAAAAGTAGCAATTTTTCCGTGAAAAACGGAACTAAAACTGATTAA
AATGCTACTTTAAAACACCAAGCGAAGCAAAACTTTTAggtttcttttga
taatttgaCAAAAGGTCTccggttaaaaacttttttacaaaaaaacataa
attttgatgtaatttttcTGCAAACACGCAAAAATacacctacattttgg
ggtgcagtAGAAAAgcaatttagatttttgacaattttttggatcaattc
ccttatttttaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036662XLOC_036662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058181-exon-scaffold_307-1491911889:186257..186671TCONS_00058181-exon-scaffold_307-1491911889:186257..186671Clytia hemisphaericaexon
TCONS_00058181-exon-scaffold_307-1510915933:186257..186671TCONS_00058181-exon-scaffold_307-1510915933:186257..186671Clytia hemisphaericaexon
TCONS_00058181-exon-scaffold_307-1575043694:186257..186671TCONS_00058181-exon-scaffold_307-1575043694:186257..186671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:186257..186671 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02468	0.43782	0	1.3553	0.319956	0.440914	0.442837	0.207289	0.653385	0.608718	0.348968	0.207831	0.114539	0	0	0.206457	0.330831	0	0.183076	0.191576	1.31241	2.37768	0.506639	0	0	0	0.60589	1.51216	0.558374	0.517031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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