Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=2841bpRun BLAST on NCBI protein sequence of TCONS_00005760-protein >TCONS_00005760-protein ID=TCONS_00005760-protein|Name=TCONS_00005760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp MADRLFMYSWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSERun BLAST on NCBI transcript from alignment at sc0000059:282924..291178- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=8255bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:282924..291178- >TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=CDS|length=7008bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Match: CRKL (Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 5.337e-52 Identity = 124/299 (41.47%), Postives = 174/299 (58.19%), Query Frame = 1 Query: 136 SWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSENRKVSHYIITNRQG-QYHIGDQVFNDLPDIVEFYKRHFLDTTTLXXXXXXXXXXXXXXXXXXXXXXXSIK---VKAKYNFPGNDPEDLPFRKNDNLTILKKEEDQWWLARDSQGKEGMIPANYVEXXXXXX-----------------XXXXXXXXXXXXXXPSITTGSGGYTTPNNXXXXXXXXXXXXXXXIAEAIQDRVPSIYDPYELKFQKGERILVLKMREDGIWEGQLKNGKKGIFPFRYVKIVSSSPQDVD 969 +WY G +SR ++ L Q G+FLVRDS++C G YVLSVSEN +VSHYII + ++ IGDQ F+ LP ++EFYK H+LDTTTL+EPA R P + +A P V+ Y+FPGND EDLPF+K + L I++K E+QWW AR+ G+ GMIP YVE + +S + + T+T +P+++ G TP +P+ P A+AIQ RVP YD L + G+ + V +M +G WEG++ NG+KG+FPF +VKI PQ+ D Sbjct: 13 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP--------LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRKGLFPFTHVKIF--DPQNPD 300 The following BLAST results are available for this feature:
BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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