TCONS_00005760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005760
Unique NameTCONS_00005760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=2841bp
agaaaagaaataaagcaCGAAAATGCTAAAATTATATGTTGTTGTATGGt
agcatttttttcaaattgaatttattttttgcaaTTGGGAGATTTATTTA
TAATATACACAATGGCTGATAGATTATTTATGTACAGttgGTATCATGGG
GAAATTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGG
TCTTTTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTAT
CTGTCAgTGAAAACCGTAAAGTCAGCCACTACATTATCACGAATCGGCAA
GGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCCTGATATCGT
AGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAGTTGAGCCAg
cAGCACGACAAGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCA
CCACAAGAATCGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATGA
TCCAGAGGATTTACCATTCCGCAAGAATGACAATTTAACGATATTGAAGA
AAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGA
ATGATTCCTGCTAATTATGTCGAAGTGGTACGGACGACATCCACAGTCAA
CACCATGTCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAG
GATCTGGTGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGTT
CCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCAAGATCGTGT
CCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGAAAGGAGAGAGAA
TTTTAGTGCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAattaaaa
aatggtaaaaaaggaattttcccGTTCCGCTACGTCAAAATAGTTTCCAG
TTCACCACAAGACGTAGATGCGTGGAACAACTCGtaataactcgggataa
ctcctTAGATGTATTTCTCTTAATACAATTCATAGTTGTGGACAAGATGG
TTATGCACCTCCCAATTGAATGGTGATTATGATATGTATCAATGGAAGAC
CTTTACTTGAAAACTACACTTTTTTTGTACGCATGTTTTGGCGGCTGGAT
CATgatttaatgatattttgataGTTATGTGCTATATCCCCATTAACTTC
TTATTCTGACCCCAATTCTATCCTTAAACTAGATTTTGAAGTGTTACTTC
TCCAAATAGACACAAAAAATCACACACCATAAGAAGAAACTTGactcgtt
ttttataagaatcagtaacTCTTTTTTTGAGACTCAGCTGTTCCTATATT
TTTCGGCACCTTGAATTCATAATGATTCCTTCTACCCTGATTCTATTTTA
GGGCAAGACTAATGAATTTTAGGTTTAACATACTATTCTTTATAATTTGA
CTCTTAATAAGCTTAAATTCAAACAGTCCAGGCTTGCCATTGTTCTTAAA
ACGTTctaattttggcatttttgagcctcattgttctaaAAAGGAGTGAT
AATTTTTGTAAGGAGTTTGGGAATTTCTATGATGCAAGGTTTAAATTCGT
ATAATTGAAGGGTGTGTGTATCTTTTCCTGCAACAAAACAACTCGTCTGA
TTTTGCCATAATTTAcatcaatattttttatctttttttctgtTATAATA
ATGTAATCTCGAATGAATTCAAAGCGCAAGTACGGTGGCCCtgaaatgtc
ttcattttctcaCATATGATAAAGACCAAATATTCGGTGATGAAACAGAG
ATATTTTAGGGCCATCGTGCGTCATAatgtaaattgttttttttgtactG
AGGAATATGATTAAAATTTTCtagttaatttttatttttggtgatttttt
tgtgtctCTGATTCAATCGACTGTTTAAGATATTGACTATTAAATAGGTT
CTTGAGATGACTAAATAGGTTGATTTTTGTTGTGGGAATTATTTTTGTCA
ATACTTTACTCGGATAAGTTTAACTACATATTAGACTTTGCGTTTTCGcc
aatttttgtattttcgccaattttgttaaaatttctgGCTCACAAAATAA
ATCGCACGCCAAAAATTCTCTTGTCACGGTATCTCTCTATTTATACTGTT
TTtctgttttaatttttgctaTGTTATAGATTTTATTATACCTTTTTGTA
ATGTATATTTTTCAcgatattattttttgtttgattatgTTATTGTGTAG
CACgtttctaaaaatcttttttttttcgaacaaaaatattttcaatagcA
CGCAAAAATATTATATTAGAGAAGTCCCCCCATATGTTCTGTTTCTAACT
CAATTCGAATGGTTTTGAGCACCAAGCCAAGTCATATATGTTATCTGCCA
TATCGACTTTTATCTTCTCTTGAGCCAGTATGAGACATGTTTTCAGCTGT
TTTTcttaataaaatgaaataattttgaattctcttatttttataaatta
ttgGTCAAATTTTCTCTTCGTAGCTGAGTGGGTTGAACCTTTTTAGTCAT
GCTCATGCCCCTTGTCTCCATTTATGAATAAAAACAATACAATAGAATAT
TTTAAACTAAATTGTCATTACAGTATGTGTAACTTTtgtagaataatttt
tttagtATCAATCCAATTTTTGGTATACTTTCCCCCATTTTAAGCCAAGT
CTTGTATAAATACGAAAAAAGTATATTATTATTTTCTGTTTCTGTATTAT
TTGATTGACTCAGATGagatgaagtttttataagattatACTtaaataat
tggtcatttgaagttataaaatgacgcgttcttcagaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00005760-protein

>TCONS_00005760-protein ID=TCONS_00005760-protein|Name=TCONS_00005760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MADRLFMYSWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSE
NRKVSHYIITNRQGQYHIGDQVFNDLPDIVEFYKRHFLDTTTLVEPAARQ
VEPEPEAPAARAPPQESIKVKAKYNFPGNDPEDLPFRKNDNLTILKKEED
QWWLARDSQGKEGMIPANYVEVVRTTSTVNTMSNSSTSTRVPSITTGSGG
YTTPNNTSVPSTVPTATTVPAIAEAIQDRVPSIYDPYELKFQKGERILVL
KMREDGIWEGQLKNGKKGIFPFRYVKIVSSSPQDVDAWNNS
Run BLAST on NCBI

transcript from alignment at sc0000059:282924..291178-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=8255bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica)
AGAAAAGAAATAAAGCACGAAAATGCTAAAATTATATGTTGTTGTATGGT AGCATTTTTTTCAAATTGAATTTATTTTTTGCAATTGGGAGATTTATTTA TAATATACACAATGGCTGATAGATTATTTATGTACAGGTAAGTTAACTTC TTTCAATTTACTTTGATTGACATTGATTATTGTGGTAAATTATCATAATT TATCACAGTCTACACTTTAGCGCAATATTTTATTAACCAGGGTGCTAAGG CTCAAGGCCTTAAATTAGCCATTAAATCTTGTAAAGTGAAAGTTTTTTGT ATAATCTAATCATGACAAATCACAGCCCATGCCCTAATATCAGGGGTGGA CAAATTAAGAATCTTTCAGAAAATGAGCTAGAATGCTAAGCAACCCCAGG CCTGACCTGAAAAGTTGAGTTACTTATAAAAAAATGTGTAATAATTTGCT TTTGATTTTGCTGTTTGAAACAAGTATAGATCAAACAAAGTGTTTTGATG CTAATATTTCTTTTTACATGATTTTATTTTTAGTTGGTATCATGGGGAAA TTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCTT TTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTGT CAGGTAAAGTAAAAATATTTTGTATACAAGCCTGGTTGGAAATAGTGTAT TATAGTTTATGCATATACTAAGAAAATATGCATTTTAAAGACCAAATTTT GAGCGTATATGTAGTTTTGGCATAAAGATGCTTTCCTTCTTGACCAGGCC CATTTTCATCTTTTGAAAGAAATGTGGCTAACACATTGTTCTGATTGATT TCATTTTTTTTCTAAGAAAACTTTAAACATTACTCCTAATTGGAAAAACG TTATCATTAAAAGTAACCCCTTGTTGAAAAGATAATTTTGAGGAGAATGA TTCAAGTCTAAGAGAATGAAGATGGAAATCAAAATTAGAAAAAAAGAGAT GATTTTTTCTAATGTGACTAAAAATTTTATCTTATATTTTTCTGAAACTT GACAATGACTGATTTCAAATATTAAATCAGATTTTTTCTTTCACTCTTAA ATCATAAGTTATTATAGCCCTCCCAAAAAGGTCCAAATCATCCAGTTTTA CTATAGCCATACATATTTTATTGCCCATCTGTTAAAAAAAGACGTTTTAA TACTTTTTTAGTGAAAACCGTAAAGTCAGCCACTACATTATCACGAATCG GCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCCTGATA TCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAGTTGAG CCAGTAAGTATAAAAAATAACTTTTTAGCTTTAATTTTATTTTCGTTTAG GATTTTAGTACAATATAGTGGCTGGTTTAAGTGTAGTGCTACAGCGATCA AAACAGGGGGGGGGTCAATATTTATGATACCAACCCATAGCCCAAAAACC TGACTTTTGACCTTTTGAGCTAAGTTAACACCACCACCCCAAAATNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNAGGAAAAAAGATACCACCACCCGGCTAT GGGTCTGGTATCTGGATGTTGACCCCCCCCCCTGATCAAAATTTGAAAAT CAGGGGAGGGATTCTTTGACCTTTTTTTCTCAAATTCTTTCTCCATCCTT GGACTACATACAGAGGCTTTTCTGTCTCTATAATACCAAAGTTCCAAAAA TATGTGTTAATTTGCAATGTAAATCCATTCACCGTCTCAGAAGGAAAACT TTGCTTGCTTTGACCACTGTTGAAAGCTGGACCTGGTATCTTCCATGTTT TATATTATATTGTTTTCATTTTTTTAGGCAGCACGACAAGTTGAGCCGGA ACCTGAAGCTCCAGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGA AAGCGAAATATAATTTTCCTGGAAATGTGAGTAAAAGATGAAAAAAAGAG TGGTCTAACTCTGGTGAAATTATAAAGTAGAGCATTTTTATGAACCTGAT GATGGTATAAAACCACTGATTAACTTTGAGAATTTTTGTTCATGAATTTT AAAATATATTTTTAATTGTTTGAATCATTGGTTGTATATAGTGAGTGGAA ATGTTTGGATTAGTAGGTGTAGTTATCCCCATGGAAATTCCATAAGGTTT TGAAAAAAAGCTGTAAAAATTTCCTTTGGCAATTAAGAGGTTAAAAGAGG AGAAAAATAGATAAGTTTGAGAAGAAATTTCCCCATAAGCAGGGCTTTAT AAGAATGTCCTACCGATACCTTAAGCCATTTTTCCTGCCCTTTTAGCGTC CGGTTAACGAACCCTGCCCCGCCTAAAATCATGAAAGTTTTGGTAAAAAC AGCCTTTTTAGTGGAAAAACACTAAAAGTGCCCTTTTTGGCCAACGGACA CTGCCCTGCCTTTCTAAAATAATTATGGCCTCTACCTTATTACACGAATA TTACTAGACAAGTATTCAATGGCCTTGAAATTTGAACGATCTGAAATCAA CACAAATTTTTCTGATTTTTCAAGGAAACAATGACTGGTTTTGATCAAGG GGGTTTTTATTAACACGAAATATTTTAATTCGTGTTCATAAAATGACTAG TAATATTCGTGTAATAAGGTTAGATTTAATATTAAGTGAATAAATTTTGA AAAAATATCCCCATAAAGTTTTTATAATACAAGATTAATAAAAAAAATGG AGAGAAAAGATGTGAACTACCAGGAATTACCCGAATGTAGACAAGAGGCT GCATTAAGAATGTTCTGAATGGAAATGAATGAATGATTTTTTATAATACA GGATCCAGAGGATTTACCATTCCGCAAGAATGACAATTTAACGATATTGA AGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAA GGAATGATTCCTGCTAATTATGTCGAAGTGGTATGGAAACAGCTTTCTTT AACTTTTTTTATTAAATTTTTAGATACTAAAGTATACATCCATGTGAAAT CTGATTTCAATTTGTACTGTTGTTGTAGTGTTTCAACTATTCTCTCTCTA AACAATTTACAAGTTGAAGGGTGTGCTAGGCCATTGATTTCAAAGCCACG AGGGGCTAGATCCAAAACTCCTGGATTGGAAAAGAAGCTACTTATTTCCT ATCCAAATGTTTGACCTGCATGTTTTCCAAACATAATTTCTAAATGTGGG ACAAACTTAAAGCTTCGCTTTTCTTGCTTGAGAAATGTTGAGGATTCCTC TCTCGCCCCTTCGGGGCTTCAAACTCAATATGTTAACCAGACTAAGCCTT TATGATAGTATCTGTCCATTTTGACAAGACTCTGGTCGAACAAATACTGA TTCTCATTTTTGCAACACTTTTTAGGTACGGACGACATCCACAGTCAACA CCATGTCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGA TCTGGTGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGTAAG TCTGCCTCATTGATCGCTAGCAACTTGACTGGATATGGCTTCCCATATAA AAGGAAGCCCGTCCAGTTTTAAAGCTGACTAGTCCNACTAGCAACTAGAC TGGATATGGCTTCCCATATAAAAGGAAGCCCGTCCAGTTTTAAAGCTGAC TAGTCCGTCATCTTGTTTTCAATTCTGATCGTCAACAACACGATTGGAAC GTTTTGAAATTCCAGCTCCCAGGATTTTTCAGGTGGGGCTAAGGAGAAAA TTCCCAGGCTAAATTCAAAAAACTTAGCCCCACCTTCACAAAGCAAAATA TCAAAGAAATTTTGTTTGCAAATTCTCAAGAAATCTACTGTGCCGCAGGC AAAAATGTTTTTCAGTGAGGGTCAAAACCTTCCCCACAGCAGAGATTTTA ACATAATTTAAAATATTTGTTACCTATCAGCTCTACTCCAGTTCTATTAC CCAACGGCAATGAATTTTGAAATTAGCCGTAAATATCGGGTTTGTGTACA GACTAACCTGGACTAACCAGCATAATGCTCTGCTCAAAAGAGATATGGTA AAGGTCCATTCATTCAAAGCTGAAGTGAAAATTCCTGAAAGTTGTCTGAA AATGAAAGGAAAAGCGACTGGGTTTCTAAAATGTATATTTTTGATTGATA GTAGATCTAGGCTCTTAGATCGTATAAAAACCTGAGCATTTTATAATATT CTTGTAAAATTTGGATGAAAAAGTTTAAAGCGGGCTGTCAAAGCCATCCT GGGTGCTAGATCCTCTTACGATGTATCGTAGATACTCAGATCATTTTACA AAGCTTGCCTGTCGTTCTTACTCACTCTCAGAGTTTTGACATGCCCTCAC TTTTCGCACCATGTATTTTTCCCACACTTCTTCAGATTTATGGAAAACTT GATTTGCCAGACACTGTTATCGAAATCGCTTTCCTCTCTTCTTCTTTGGA GACCCCCAACAAAACAGTTTTGAGGGATAGGGACGTTTGGAGAAGGAAGG ATCGTTAATGCCTGGACCGCAGTCGAAACATGATGATGATAAAATGTTAT TCATTTTTTCAGGTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGC GATTCAAGATCGTGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTC AGGTATGTCAATATGAAGTGTTTTTTTTTTCTTATACAGTGTTAATAGTT CTTCCGTCTCTGTGAAGTATATAAAGAGGCTTAATTCATCCTCAGAATTA ATTATAATTCGCCAAATTTCAAAAAAGTGAGCTAATAATGCTGTGTCTCA GGCAAAAAAAAGTCAGCTTTGACCACTGCTTATACGAGATATCAACATAT TTTCTAGATTTTTTGAAACTTTGGATGCAAATAAGTTAATGTTTCAGGTT TTAATAAAGTCTCTTCGAAAATGTCTTATAAAGCAATCAGTAAAGATAAT TCAATTACCATGGTGGCCAGCGACCCTTGAATTCCTTGAAACCCTTGAAA CACCCTTGATTTTTTTCATGCCCTTGAAAATTTCATTGAAACCCTTGAAA AATCAATATTATTGTGGGGACCCTTGAGGTGAAAAATTCATACCCTTGAA ACCCTTGAAATCCCAAAGTTTTCTTCTTTCCTTAATGTGTCACTGTATTT TGATTCTTTTTTCTTTATTTTTTATTTGCAGAAAGGAGAGAGAATTTTAG TGCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGT AAAAAAGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACC ACAAGACGTAGATGCGTGGAACAACTCGTAATAACTCGGGATAACTCCTT AGATGTATTTCTCTTAATACAATTCATAGGTATTAAATTAATATGGTTCT ACTCTCGAGTTTCGGGGAATGTTCAACTCGTACGTGAGCTGAGAGTGAGT TTGGGTGTTGAGTTTAAAGGTTGTACTTTTAATAGAGGTCTTATGAAATG AAACAACTCCCTGGAAAAACATAGAAAATAACACGCGAAAAATTTTAATG AATTTTAATATAGATCAAAATAAGATTTAAAATATTTTGTCTTTCATAGT GTAGTTAGGTTTACACAAACAAAGTTATATGCTATGAAAATTTACTTCAA AGTCTTCTTTATGACTAAATGTAAGTACTAAAATAACGCACAACTCTCTA TCACACCTTTGCCCATCTGGTACGCAGTGTTGTTTCAACGTTCATAAAAC GTTTTATTGACGTTACGGGACGTTAGATAAACGTTGAAACGACGGTCGCA TGCTAGCCTCAGCTCAACAAGAACTCCCTGAAAATCTTACATTTTGATGG TTTGCCTACTAAAAGAAACTCAGAATTATGAGCTTTCCAAATTGGAGTGA AATAGGATATTTGTTTACTAAAACATGGTTTGACCTGAGAATGTATTGGA ATTGCTGGTGGTGCTGTTAAATAAAGTCTAATGTAATTGGAAGAAAAACA AACCCCACCGCTAGATTTGATGAAATCCTTCGTTGGGAATTTTATTCAAT GATTGTTGTAATGCTATTTGGTGATTTTCTTGGATACGGATTTGTTCAGT TGTGGACAAGATGGTTATGCACCTCCCAATTGAATGGTGATTATGATATG TATCAATGGAAGACCTTTACTTGAAAACTACACTTTTTTTGTACGCATGT TTTGGCGGCTGGATCATGATTTAATGATATTTTGATAGTTATGTGCTATA TCCCCATTAACTTCTTATTCTGACCCCAATTCTATCCTTAAACTAGATTT TGAAGTGTTACTTCTCCAAATAGACACAAAAAATCACACACCATAAGAAG AAACTTGACTCGTTTTTTATAAGAATCAGTAACTCTTTTTTTGAGACTCA GCTGTTCCTATATTTTTCGGCACCTTGAATTCATAATGATTCCTTCTACC CTGATTCTATTTTAGGGCAAGACTAATGAATTTTAGGTTTAACATACTAT TCTTTATAATTTGACTCTTAATAAGCTTAAATTCAAACAGTCCAGGCTTG CCATTGTTCTTAAAACGTTCTAATTTTGGCATTTTTGAGCCTCATTGTTC TAAAAAGGAGTGATAATTTTTGTAAGGAGTTTGGGAATTTCTATGATGCA AGGTTTAAATTCGTATAATTGAAGGGTGTGTGTATCTTTTCCTGCAACAA AACAACTCGTCTGATTTTGCCATAATTTACATCAATATTTTTTATCTTTT TTTCTGTTATAATAATGTAATCTCGAATGAATTCAAAGCGCAAGTACGGT GGCCCTGAAATGTCTTCATTTTCTCACATATGATAAAGACCAAATATTCG GTGATGAAACAGAGATATTTTAGGGCCATCGTGCGTCATAATGTAAATTG TTTTTTTTGTACTGAGGAATATGATTAAAATTTTCTAGTTAATTTTTATT TTTGGTGATTTTTTTGTGTCTCTGATTCAATCGACTGTTTAAGATATTGA CTATTAAATAGGTTCTTGAGATGACTAAATAGGTTGATTTTTGTTGTGGG AATTATTTTTGTCAATACTTTACTCGGATAAGTTTAACTACATATTAGAC TTTGCGTTTTCGCCAATTTTTGTATTTTCGCCAATTTTGTTAAAATTTCT GGCTCACAAAATAAATCGCACGCCAAAAATTCTCTTGTCACGGTATCTCT CTATTTATACTGTTTTTCTGTTTTAATTTTTGCTATGTTATAGATTTTAT TATACCTTTTTGTAATGTATATTTTTCACGATATTATTTTTTGTTTGATT ATGTTATTGTGTAGCACGTTTCTAAAAATCTTTTTTTTTTCGAACAAAAA TATTTTCAATAGCACGCAAAAATATTATATTAGAGAAGTCCCCCCATATG TTCTGTTTCTAACTCAATTCGAATGGTTTTGAGCACCAAGCCAAGTCATA TATGTTATCTGCCATATCGACTTTTATCTTCTCTTGAGCCAGTATGAGAC ATGTTTTCAGCTGTTTTTCTTAATAAAATGAAATAATTTTGAATTCTCTT ATTTTTATAAATTATTGGTCAAATTTTCTCTTCGTAGCTGAGTGGGTTGA ACCTTTTTAGTCATGCTCATGCCCCTTGTCTCCATTTATGAATAAAAACA ATACAATAGAATATTTTAAACTAAATTGTCATTACAGTATGTGTAACTTT TGTAGAATAATTTTTTTAGTATCAATCCAATTTTTGGTATACTTTCCCCC ATTTTAAGCCAAGTCTTGTATAAATACGAAAAAAGTATATTATTATTTTC TGTTTCTGTATTATTTGATTGACTCAGATGAGATGAAGTTTTTATAAGAT TATACTTAAATAATTGGTCATTTGAAGTTATAAAATGACGCGTTCTTCAG AAAAA

Coding sequence (CDS) from alignment at sc0000059:282924..291178-

>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=CDS|length=7008bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica)
AAAGGAGAGAGAATTTTAGTGCTTAAGATGCGTGAGGATGGCATTTGGGA
AGGACAATTAAAAAATGGTAAAAAAGGAATTTTCCCGTTCCGCTACGTCA
AAATAGTTTCCAGTTCACCACAAGACGTAGATGCGTGGAACAACTCGTAA
GTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCAAGATCG
TGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGGTACGGACGA
CATCCACAGTCAACACCATGTCAAATTCATCCACCTCAACCCGTGTACCA
AGCATCACAACAGGATCTGGTGGTTACACGACACCCAACAATACTTCAGT
ACCTTCAACTGATCCAGAGGATTTACCATTCCGCAAGAATGACAATTTAA
CGATATTGAAGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTCAA
GGAAAAGAAGGAATGATTCCTGCTAATTATGTCGAAGTGGCAGCACGACA
AGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCACCACAAGAAT
CGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATTGAAAACCGTAA
AGTCAGCCACTACATTATCACGAATCGGCAAGGGCAGTATCACATTGGAG
ATCAAGTATTCAATGACTTGCCTGATATCGTAGAATTTTATAAACGGCAT
TTTTTGGATACAACTACTCTAGTTGAGCCATTGGTATCATGGGGAAATTT
CAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCTTTTT
CTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTGTCAG
ATGGCTGATAGATTATTTATGTACAGAAAGGAGAGAGAATTTTAGTGCTT
AAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGTAAAAA
AGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACCACAAG
ACGTAGATGCGTGGAACAACTCGTAAGTTCCAACAGCAACGACGGTACCA
GCGATCGCAGAAGCGATTCAAGATCGTGTCCCTAGTATCTACGACCCTTA
CGAACTTAAATTTCAGGTACGGACGACATCCACAGTCAACACCATGTCAA
ATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGATCTGGTGGT
TACACGACACCCAACAATACTTCAGTACCTTCAACTGATCCAGAGGATTT
ACCATTCCGCAAGAATGACAATTTAACGATATTGAAGAAAGAGGAGGATC
AATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGAATGATTCCTGCT
AATTATGTCGAAGTGGCAGCACGACAAGTTGAGCCGGAACCTGAAGCTCC
AGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGAAAGCGAAATATA
ATTTTCCTGGAAATTGAAAACCGTAAAGTCAGCCACTACATTATCACGAA
TCGGCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCCTG
ATATCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAGTT
GAGCCATTGGTATCATGGGGAAATTTCAAGGCCAACATCAGAAGAGATCT
TACTGAATCAAAGCCCTGGTCTTTTTCTGGTTCGAGATAGTACTTCGTGC
AAAGGGGGATATGTTTTATCTGTCAGATGGCTGATAGATTATTTATGTAC
AGAAAGGAGAGAGAATTTTAGTGCTTAAGATGCGTGAGGATGGCATTTGG
GAAGGACAATTAAAAAATGGTAAAAAAGGAATTTTCCCGTTCCGCTACGT
CAAAATAGTTTCCAGTTCACCACAAGACGTAGATGCGTGGAACAACTCGT
AAGTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCAAGAT
CGTGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGGTACGGAC
GACATCCACAGTCAACACCATGTCAAATTCATCCACCTCAACCCGTGTAC
CAAGCATCACAACAGGATCTGGTGGTTACACGACACCCAACAATACTTCA
GTACCTTCAACTGATCCAGAGGATTTACCATTCCGCAAGAATGACAATTT
AACGATATTGAAGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTC
AAGGAAAAGAAGGAATGATTCCTGCTAATTATGTCGAAGTGGCAGCACGA
CAAGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCACCACAAGA
ATCGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATTGAAAACCGT
AAAGTCAGCCACTACATTATCACGAATCGGCAAGGGCAGTATCACATTGG
AGATCAAGTATTCAATGACTTGCCTGATATCGTAGAATTTTATAAACGGC
ATTTTTTGGATACAACTACTCTAGTTGAGCCATTGGTATCATGGGGAAAT
TTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCTTT
TTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTGTC
AGATGGCTGATAGATTATTTATGTACAGAAAGGAGAGAGAATTTTAGTGC
TTAAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGTAAA
AAAGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACCACA
AGACGTAGATGCGTGGAACAACTCGTAAGTTCCAACAGCAACGACGGTAC
CAGCGATCGCAGAAGCGATTCAAGATCGTGTCCCTAGTATCTACGACCCT
TACGAACTTAAATTTCAGGTACGGACGACATCCACAGTCAACACCATGTC
AAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGATCTGGTG
GTTACACGACACCCAACAATACTTCAGTACCTTCAACTGATCCAGAGGAT
TTACCATTCCGCAAGAATGACAATTTAACGATATTGAAGAAAGAGGAGGA
TCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGAATGATTCCTG
CTAATTATGTCGAAGTGGCAGCACGACAAGTTGAGCCGGAACCTGAAGCT
CCAGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGAAAGCGAAATA
TAATTTTCCTGGAAATTGAAAACCGTAAAGTCAGCCACTACATTATCACG
AATCGGCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCC
TGATATCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAG
TTGAGCCATTGGTATCATGGGGAAATTTCAAGGCCAACATCAGAAGAGAT
CTTACTGAATCAAAGCCCTGGTCTTTTTCTGGTTCGAGATAGTACTTCGT
GCAAAGGGGGATATGTTTTATCTGTCAGATGGCTGATAGATTATTTATGT
ACAGAAAGGAGAGAGAATTTTAGTGCTTAAGATGCGTGAGGATGGCATTT
GGGAAGGACAATTAAAAAATGGTAAAAAAGGAATTTTCCCGTTCCGCTAC
GTCAAAATAGTTTCCAGTTCACCACAAGACGTAGATGCGTGGAACAACTC
GTAAGTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCAAG
ATCGTGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGGTACGG
ACGACATCCACAGTCAACACCATGTCAAATTCATCCACCTCAACCCGTGT
ACCAAGCATCACAACAGGATCTGGTGGTTACACGACACCCAACAATACTT
CAGTACCTTCAACTGATCCAGAGGATTTACCATTCCGCAAGAATGACAAT
TTAACGATATTGAAGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGATAG
TCAAGGAAAAGAAGGAATGATTCCTGCTAATTATGTCGAAGTGGCAGCAC
GACAAGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCACCACAA
GAATCGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATTGAAAACC
GTAAAGTCAGCCACTACATTATCACGAATCGGCAAGGGCAGTATCACATT
GGAGATCAAGTATTCAATGACTTGCCTGATATCGTAGAATTTTATAAACG
GCATTTTTTGGATACAACTACTCTAGTTGAGCCATTGGTATCATGGGGAA
ATTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCT
TTTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTG
TCAGATGGCTGATAGATTATTTATGTACAGAAAGGAGAGAGAATTTTAGT
GCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGTA
AAAAAGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACCA
CAAGACGTAGATGCGTGGAACAACTCGTAAGTTCCAACAGCAACGACGGT
ACCAGCGATCGCAGAAGCGATTCAAGATCGTGTCCCTAGTATCTACGACC
CTTACGAACTTAAATTTCAGGTACGGACGACATCCACAGTCAACACCATG
TCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGATCTGG
TGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGATCCAGAGG
ATTTACCATTCCGCAAGAATGACAATTTAACGATATTGAAGAAAGAGGAG
GATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGAATGATTCC
TGCTAATTATGTCGAAGTGGCAGCACGACAAGTTGAGCCGGAACCTGAAG
CTCCAGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGAAAGCGAAA
TATAATTTTCCTGGAAATTGAAAACCGTAAAGTCAGCCACTACATTATCA
CGAATCGGCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTG
CCTGATATCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACTCT
AGTTGAGCCATTGGTATCATGGGGAAATTTCAAGGCCAACATCAGAAGAG
ATCTTACTGAATCAAAGCCCTGGTCTTTTTCTGGTTCGAGATAGTACTTC
GTGCAAAGGGGGATATGTTTTATCTGTCAGATGGCTGATAGATTATTTAT
GTACAGAAAGGAGAGAGAATTTTAGTGCTTAAGATGCGTGAGGATGGCAT
TTGGGAAGGACAATTAAAAAATGGTAAAAAAGGAATTTTCCCGTTCCGCT
ACGTCAAAATAGTTTCCAGTTCACCACAAGACGTAGATGCGTGGAACAAC
TCGTAAGTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCA
AGATCGTGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGGTAC
GGACGACATCCACAGTCAACACCATGTCAAATTCATCCACCTCAACCCGT
GTACCAAGCATCACAACAGGATCTGGTGGTTACACGACACCCAACAATAC
TTCAGTACCTTCAACTGATCCAGAGGATTTACCATTCCGCAAGAATGACA
ATTTAACGATATTGAAGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGAT
AGTCAAGGAAAAGAAGGAATGATTCCTGCTAATTATGTCGAAGTGGCAGC
ACGACAAGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCACCAC
AAGAATCGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATTGAAAA
CCGTAAAGTCAGCCACTACATTATCACGAATCGGCAAGGGCAGTATCACA
TTGGAGATCAAGTATTCAATGACTTGCCTGATATCGTAGAATTTTATAAA
CGGCATTTTTTGGATACAACTACTCTAGTTGAGCCATTGGTATCATGGGG
AAATTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGT
CTTTTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATC
TGTCAGATGGCTGATAGATTATTTATGTACAGAAAGGAGAGAGAATTTTA
GTGCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGG
TAAAAAAGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCAC
CACAAGACGTAGATGCGTGGAACAACTCGTAAGTTCCAACAGCAACGACG
GTACCAGCGATCGCAGAAGCGATTCAAGATCGTGTCCCTAGTATCTACGA
CCCTTACGAACTTAAATTTCAGGTACGGACGACATCCACAGTCAACACCA
TGTCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGATCT
GGTGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGATCCAGA
GGATTTACCATTCCGCAAGAATGACAATTTAACGATATTGAAGAAAGAGG
AGGATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGAATGATT
CCTGCTAATTATGTCGAAGTGGCAGCACGACAAGTTGAGCCGGAACCTGA
AGCTCCAGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGAAAGCGA
AATATAATTTTCCTGGAAATTGAAAACCGTAAAGTCAGCCACTACATTAT
CACGAATCGGCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACT
TGCCTGATATCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACT
CTAGTTGAGCCATTGGTATCATGGGGAAATTTCAAGGCCAACATCAGAAG
AGATCTTACTGAATCAAAGCCCTGGTCTTTTTCTGGTTCGAGATAGTACT
TCGTGCAAAGGGGGATATGTTTTATCTGTCAGATGGCTGATAGATTATTT
ATGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003271XLOC_003271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005760-exon-sc0000059-1575043694:291042..291178TCONS_00005760-exon-sc0000059-1575043694:291042..291178Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:290526..290645TCONS_00005760-exon-sc0000059-1575043694:290526..290645Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:289826..289967TCONS_00005760-exon-sc0000059-1575043694:289826..289967Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:288903..289001TCONS_00005760-exon-sc0000059-1575043694:288903..289001Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:287899..288027TCONS_00005760-exon-sc0000059-1575043694:287899..288027Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:287334..287453TCONS_00005760-exon-sc0000059-1575043694:287334..287453Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:286177..286266TCONS_00005760-exon-sc0000059-1575043694:286177..286266Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:285450..285647TCONS_00005760-exon-sc0000059-1575043694:285450..285647Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1575043694:282924..284729TCONS_00005760-exon-sc0000059-1575043694:282924..284729Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:291042..291178TCONS_00005760-exon-sc0000059-1510915933:291042..291178Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:290526..290645TCONS_00005760-exon-sc0000059-1510915933:290526..290645Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:289826..289967TCONS_00005760-exon-sc0000059-1510915933:289826..289967Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:288903..289001TCONS_00005760-exon-sc0000059-1510915933:288903..289001Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:287899..288027TCONS_00005760-exon-sc0000059-1510915933:287899..288027Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:287334..287453TCONS_00005760-exon-sc0000059-1510915933:287334..287453Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:286177..286266TCONS_00005760-exon-sc0000059-1510915933:286177..286266Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:285450..285647TCONS_00005760-exon-sc0000059-1510915933:285450..285647Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1510915933:282924..284729TCONS_00005760-exon-sc0000059-1510915933:282924..284729Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:291042..291178TCONS_00005760-exon-sc0000059-1491911889:291042..291178Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:290526..290645TCONS_00005760-exon-sc0000059-1491911889:290526..290645Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:289826..289967TCONS_00005760-exon-sc0000059-1491911889:289826..289967Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:288903..289001TCONS_00005760-exon-sc0000059-1491911889:288903..289001Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:287899..288027TCONS_00005760-exon-sc0000059-1491911889:287899..288027Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:287334..287453TCONS_00005760-exon-sc0000059-1491911889:287334..287453Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:286177..286266TCONS_00005760-exon-sc0000059-1491911889:286177..286266Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:285450..285647TCONS_00005760-exon-sc0000059-1491911889:285450..285647Clytia hemisphaericaexon
TCONS_00005760-exon-sc0000059-1491911889:282924..284729TCONS_00005760-exon-sc0000059-1491911889:282924..284729Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005760-proteinTCONS_00005760-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:282924..291178 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0552608 0.806307 0.0184599 2.64413 1.0068 0.756265 5.44669 0.102003 0.790298 0.469577 2.57772 0.000729859 0.684919 0 1.44938 0.77318 1.27073 1.7923 0 0.348249 0 0 0 0.00276808 0.0243227 0.136825 0 5.97772e-09 5.12016e-10 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR000980SH2
IPR011511SH3_2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Match: CRKL (Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.337e-52
Identity = 124/299 (41.47%), Postives = 174/299 (58.19%), Query Frame = 1
Query:  136 SWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSENRKVSHYIITNRQG-QYHIGDQVFNDLPDIVEFYKRHFLDTTTLXXXXXXXXXXXXXXXXXXXXXXXSIK---VKAKYNFPGNDPEDLPFRKNDNLTILKKEEDQWWLARDSQGKEGMIPANYVEXXXXXX-----------------XXXXXXXXXXXXXXPSITTGSGGYTTPNNXXXXXXXXXXXXXXXIAEAIQDRVPSIYDPYELKFQKGERILVLKMREDGIWEGQLKNGKKGIFPFRYVKIVSSSPQDVD 969
            +WY G +SR  ++  L  Q  G+FLVRDS++C G YVLSVSEN +VSHYII +    ++ IGDQ F+ LP ++EFYK H+LDTTTL+EPA R   P   + +A   P        V+  Y+FPGND EDLPF+K + L I++K E+QWW AR+  G+ GMIP  YVE +  +S                   +  +   T+T +P+++   G   TP        +P+    P  A+AIQ RVP  YD   L  + G+ + V +M  +G WEG++ NG+KG+FPF +VKI    PQ+ D
Sbjct:   13 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP--------LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRKGLFPFTHVKIF--DPQNPD 300          
The following BLAST results are available for this feature:
BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRKL5.337e-5241.47Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1[more]
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