|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058119 ID=TCONS_00058119|Name=TCONS_00058119|organism=Clytia hemisphaerica|type=transcript|length=871bp
ATAGTTGTTTTGGATtatgttttaagaatttctgtTGATACTTTTAACAA
AAAGGGAATTCAAATTAAAACGCCCCAGGGCACACGTGATCCTGGCTTGT
TTGTGACTGATCTGGATTTTGCTGATGATCTCGCACTTGTTGCAGAAAGT
ATTCAAAATCTCGAAAGTCTACTCCATTCTTTAGAAACTTTAGCAAGTCA
GGTCGGTCTTTACTGTAACGGGAAAAAAACAGAATATCTTTGCTCCTCTG
AAAACTTTCTccctttattttctttgaaaggtGTTGACATTAAAAAAGTA
ATCGATTTCAACTACTTAGGCTCTCTTATCAACAGTTCTGATAGCGACTT
TAAAACCAGGAAAGCACTTGCGTGGAAAGCTTGTAACAAGCTCAACAAAA
TCTGGCAATGTGATCTTGACAATAATctcaagctgaaaattttcaagtgt
CTTGCGGAGCCCATTCTTCTTTATGGTTCTGAAACCTGGACCATGACAAA
ATCTATGGAGAAAAGTCTTGATGGGTGTTATACCAATCTCCTAAAAAGGG
TTCAAAATCTTGATTGGAGAGATCATCCCAACCTCGCCCAAATCTACCAA
GGTCTCCCTAGAATCTCTTCTGTTCTTTCTTCCAGGAAGCTAACTTTTTC
CGGCCATTGTTTCAGAGCAAAATCTGAAATCATTTCAGATATCTTATTGT
GGTGCCCTACTGGTCCTAGACACTCAAGGAAGTGAACTTTCCTCGACAAT
TTGAGGCGGGAAACAGGGCTCGAGTTAGAAGAACTGAAAACAGTTATGTC
AGACCGTGAGCTGTGGAGAGAGAGATACTCGGTATTTCCGACCTAacggt
cgaaggatgatgatgatgaat Run BLAST on NCBI protein sequence of TCONS_00058119-protein >TCONS_00058119-protein ID=TCONS_00058119-protein|Name=TCONS_00058119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
IVVLDYVLRISVDTFNKKGIQIKTPQGTRDPGLFVTDLDFADDLALVAES
IQNLESLLHSLETLASQVGLYCNGKKTEYLCSSENFLPLFSLKGVDIKKV
IDFNYLGSLINSSDSDFKTRKALAWKACNKLNKIWQCDLDNNLKLKIFKC
LAEPILLYGSETWTMTKSMEKSLDGCYTNLLKRVQNLDWRDHPNLAQIYQ
GLPRISSVLSSRKLTFSGHCFRAKSEIISDILLWCPTGPRHSRK Run BLAST on NCBI transcript from alignment at scaffold_306:29461..30331 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058119 ID=TCONS_00058119|Name=TCONS_00058119|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at scaffold_306:29461..30331 (Clytia hemisphaerica)
attcatcatcatcatccttcgaccgtTAGGTCGGAAATACCGAGTATCTC
TCTCTCCACAGCTCACGGTCTGACATAACTGTTTTCAGTTCTTCTAACTC
GAGCCCTGTTTCCCGCCTCAAATTGTCGAGGAAAGTTCACTTCCTTGAGT
GTCTAGGACCAGTAGGGCACCACAATAAGATATCTGAAATGATTTCAGAT
TTTGCTCTGAAACAATGGCCGGAAAAAGTTAGCTTCCTGGAAGAAAGAAC
AGAAGAGATTCTAGGGAGACCTTGGTAGATTTGGGCGAGGTTGGGATGAT
CTCTCCAATCAAGATTTTGAACCCTTTTTAGGAGATTGGTATAACACCCA
TCAAGACTTTTCTCCATAGATTTTGTCATGGTCCAGGTTTCAGAACCATA
AAGAAGAATGGGCTCCGCAAGacacttgaaaattttcagcttgagATTAT
TGTCAAGATCACATTGCCAGATTTTGTTGAGCTTGTTACAAGCTTTCCAC
GCAAGTGCTTTCCTGGTTTTAAAGTCGCTATCAGAACTGTTGATAAGAGA
GCCTAAGTAGTTGAAATCGATTACTTTTTTAATGTCAACacctttcaaag
aaaataaagggAGAAAGTTTTCAGAGGAGCAAAGATATTCTGTTTTTTTC
CCGTTACAGTAAAGACCGACCTGACTTGCTAAAGTTTCTAAAGAATGGAG
TAGACTTTCGAGATTTTGAATACTTTCTGCAACAAGTGCGAGATCATCAG
CAAAATCCAGATCAGTCACAAACAAGCCAGGATCACGTGTGCCCTGGGGC
GTTTTAATTTGAATTCCCTTTTTGTTAAAAGTATCAacagaaattcttaa
aacataATCCAAAACAACTAT Coding sequence (CDS) from alignment at scaffold_306:29461..30331 >TCONS_00058119 ID=TCONS_00058119|Name=TCONS_00058119|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_306:29461..30331 (Clytia hemisphaerica)
TCACTTCCTTGAGTGTCTAGGACCAGTAGGGCACCACAATAAGATATCTG
AAATGATTTCAGATTTTGCTCTGAAACAATGGCCGGAAAAAGTTAGCTTC
CTGGAAGAAAGAACAGAAGAGATTCTAGGGAGACCTTGGTAGATTTGGGC
GAGGTTGGGATGATCTCTCCAATCAAGATTTTGAACCCTTTTTAGGAGAT
TGGTATAACACCCATCAAGACTTTTCTCCATAGATTTTGTCATGGTCCAG
GTTTCAGAACCATAAAGAAGAATGGGCTCCGCAAGacacttgaaaatttt
cagcttgagATTATTGTCAAGATCACATTGCCAGATTTTGTTGAGCTTGT
TACAAGCTTTCCACGCAAGTGCTTTCCTGGTTTTAAAGTCGCTATCAGAA
CTGTTGATAAGAGAGCCTAAGTAGTTGAAATCGATTACTTTTTTAATGTC
AACacctttcaaagaaaataaagggAGAAAGTTTTCAGAGGAGCAAAGAT
ATTCTGTTTTTTTCCCGTTACAGTAAAGACCGACCTGACTTGCTAAAGTT
TCTAAAGAATGGAGTAGACTTTCGAGATTTTGAATACTTTCTGCAACAAG
TGCGAGATCATCAGCAAAATCCAGATCAGTCACAAACAAGCCAGGATCAC
GTGTGCCCTGGGGCGTTTTAATTTGAATTCCCTTTTTGTTAAAAGTATCA
acagaaattcttaaaacataATCCAAAACAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058119-exon-scaffold_306-1491911889:29461..30331 | TCONS_00058119-exon-scaffold_306-1491911889:29461..30331 | Clytia hemisphaerica | exon |
| TCONS_00058119-exon-scaffold_306-1510915933:29461..30331 | TCONS_00058119-exon-scaffold_306-1510915933:29461..30331 | Clytia hemisphaerica | exon |
| TCONS_00058119-exon-scaffold_306-1575043694:29461..30331 | TCONS_00058119-exon-scaffold_306-1575043694:29461..30331 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_306 | supercontig | scaffold_306:29461..30331 . |
Blast
The following BLAST results are available for this feature:
|
