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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058026 ID=TCONS_00058026|Name=TCONS_00058026|organism=Clytia hemisphaerica|type=transcript|length=1986bp
aaaaaataccaaaaataacAATATGAAGACATTGGCAGCTACTTGTATTC
TATGCTTAGTTGTGATAGTTGAAGGACAAGGAGATTGGAAGTACCCTTCG
CTATCATCCATANCTATGTTTAGTTGTGATAGTTGAAGGACAAGGAGATT
GGAAATATTACCCTTCGCTATCATCCATACCCGATCGTCGCATATCAAAA
GTACTTTATAAGGTGCTACCCCTTTCTCAACGACTTAGATTACGAACTTC
GAAAAATTACTTGAGGTTGAGGAAATTGTCGAGGAGAAGAAGAATCGAGG
CAGGAAGATTACGTCAATGCAAGATACAGAGTGATCAAATACGAGATAAA
TATCAGAAAGCGAGATGGATTCAGCAACCAATGTTGTACGGTTTCACGGA
TGCAGAGGCTGCTAACTTCGTGCAAAGGTTCGACGATGATTTGACGGAGG
TTGTCCAAGCCTCTTGTCAAAACCAAGTTGAAAGGATTCAACGAAAAGAT
GTTCTTGAAATGTATCGGAATATGAAAAGAACACAATGTTATgttgaaag
taaacaaagtgaaaacattgagaataatagtaataatagaCGAAAACGTG
ACTTGGAGAAATTCTTAGAAAATGATACGAAATCATCAATTGATAATATT
ACAAACTTAGTGAATATAGACACTTTACGACATCGTTCGAGACGAAATAC
TGACGAACAGCGAACGATACAGAATACTGACGGAAGCGTAACGCGAATAC
GTAGATGCGTACGACGTGGTGCTGTAACACGTAACGGTTTCGTTCGTATG
TGTAGTCTCTGTCACGCTGTCACCGTACTACCTGAAAATATGTATCCACG
TTACATCAATGAAGTTATATGCGATCCAAGAGACAGAGGATGTCTCACTG
GGGGTGGTGAATGCGCAGAAAAAACCCTGAAATTACCGTTCCGTAAAGAC
ACACAGGGACTAGGATCTGATCAACTTTCTGAATGGACAACTTATGAACA
GCCTATTCGCAGCTCATGTGAATGTGGCGTTTATCGGGATTCGGTTTTCC
AGTATTTTGTATAACGGATGAAAATACAGCCGTCTTTTTGTGCTCGAGTC
ATGGTGAGAAGCATTGCTTAATATATTCTCAGTACTGTATAAAACATCGC
AACCCCGGAGGGGGGGgagtactagggcaagatggattacggggatgctc
cgctggtcagggcaccttttttaacctccacgagtcccaggtagggtcgc
aaaaacacaaaaatagaaaaatcagtccctcgtagggtgcctatttttag
aaaatttggggaaaaagtagaaatttgagaaaattttgggatttcagtcc
cattcagggtcacttttttcgcaaatttcgagtcccacgtagggtccatt
tttcgaaccacAGCGGAGCAACCCCGtccggtcgacaagggtagtacccc
cccctccCGGGATTGCAACACCGTGCTCAACACTTTAGAAAAGATCTGTG
TATCGCAAACTTTTTCAGCACATGTTCTGAACAACCGATCCGTGGTTTGT
TTGATTGTGGCATTCATCAGGATTCAGTTTGTCAGTATTTTGTGTGACGG
AAAATGCAAATGCATAGCTGACACAAAACGTCAAATCAATGTCAATTCAA
GTAGTTTGTGTGTTAGAAACATGCTGCAGTGACACTGTGGCGTTTCGTAT
AAAGTTATATCGTCGTCAACATCATAACGACGTATGGCCAGTTCTTTGTC
AGTATTGTAAGAAATATTGCTCAATTGTGTTCATCACCATCCAAAACATC
TCCACTTCGTTCTCAGCAACGTTTAAAACATCGCATCGCTGTGCTTTGTA
CTGTGCAAACATTGTTACACAGTTGACAAGAAGTGTACAATTTGTTATTC
TATTTGAAAGATCGTGTTTGTTCTTTTTTCCTCAGCCTCAATAATTATTA
TGATTGCTCTGGCTTAGGAGAAATCATGGAATTGAC Run BLAST on NCBI protein sequence of TCONS_00058026-protein >TCONS_00058026-protein ID=TCONS_00058026-protein|Name=TCONS_00058026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MLYGFTDAEAANFVQRFDDDLTEVVQASCQNQVERIQRKDVLEMYRNMKR
TQCYVESKQSENIENNSNNRRKRDLEKFLENDTKSSIDNITNLVNIDTLR
HRSRRNTDEQRTIQNTDGSVTRIRRCVRRGAVTRNGFVRMCSLCHAVTVL
PENMYPRYINEVICDPRDRGCLTGGGECAEKTLKLPFRKDTQGLGSDQLS
EWTTYEQPIRSSCECGVYRDSVFQYFV Run BLAST on NCBI transcript from alignment at scaffold_304:147902..150313- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058026 ID=TCONS_00058026|Name=TCONS_00058026|organism=Clytia hemisphaerica|type=transcript|length=2412bp|location=Sequence derived from alignment at scaffold_304:147902..150313- (Clytia hemisphaerica)
AAAAAATACCAAAAATAACAATATGAAGACATTGGCAGCTACTTGTATTC
TATGCTTAGTTGTGATAGTTGAAGGACAAGGAGATTGGAAGTACCCTTCG
CTATCATCCATANCTATGTTTAGTTGTGATAGTTGAAGGACAAGGAGATT
GGAAATATTACCCTTCGCTATCATCCATACCCGATCGTCGCATATCAAAA
GTACTTTATAAGGTGCTACCCCTTTCTCAACGACTTAGATTACGAACTTC
GAAAAATTACTTGAGGTTGAGGAAATTGTCGAGGAGAAGAAGAATCGAGG
CAGGAAGATTACGTCAATGCAAGATACAGAGTGATCAAATACGAGATAAA
TATCAGAAAGCGAGATGGATTCAGCAACCAATGTTGTACGGTTTCACGGA
TGCAGAGGCTGCTAACTTCGTGCAAAGGTTCGACGATGATTTGACGGAGG
TTGTCCAAGCCTCTTGTCAAAACCAAGTTGAAAGGATTCAACGAAAAGAT
GTTCTTGAAATGTATCGGAATATGAAAAGAACACAATGTTATGTTGAAAG
TAAACAAAGTGAAAACATTGAGAATAATAGTAATAATAGACGAAAACGTG
ACTTGGAGAAATTCTTAGAAAATGATACGAAATCATCAATTGATAATATT
ACAAACTTAGTGAATATAGACACTTTACGACATCGTTCGAGACGAAATAC
TGACGAACAGCGAACGATACAGAATACTGACGGAAGCGTAACGCGAATAC
GTAGATGCGTACGACGTGGTGCTGTAACACGTAACGGTTTCGTTCGTATG
TGTAGTCTCTGTCACGCTGTCACCGTACTACCTGAAAATATGTAAGTTCA
ATTATCTTCGGCCAAATTAGCCTTGTTTAATTAAAATCAAAATTAACAAA
TTTAAAATTACGAGGACTATTTTGTTAGCCTTTCAAGCAGGAGAGAAGCG
GCAATTACTTTGTTCAAATTAGAAAAAAGGTTATAAACTTATTGCAGTGC
AACGTGTTCATCTGGTGGCTGTCGGTGGGTTGAGGAGTAAAGGAGTCTAT
CCCCTGTCGGATACTAATTTTAAAGATCTACCTACCTACTCAGCAGTGAA
TACTTTGAGCTCCAATTTAAGCTACTTATCCGCTGGGTTAGCGGTGATTG
GGGATCTAACCTACAACCCTTGAATTAACAGGGAGATTAACGAACTGAGC
TACCCAGAAGCTATTTCATTTATGGTTGAGGCTAAACATTCATTTTCTTT
TCTTATAATCTTTTTAGGTATCCACGTTACATCAATGAAGTTATATGCGA
TCCAAGAGACAGAGGATGTCTCACTGGGGGTGGTGAATGCGCAGAAAAAA
CCCTGAAATTACCGTTCCGTAAAGACACACAGGGACTAGGATCTGATCAA
CTTTCTGAATGGACAACTTATGAACAGCCTATTCGCAGCTCATGTGAATG
TGGCGTTTATCGGGATTCGGTTTTCCAGTATTTTGTATAACGGATGAAAA
TACAGCCGTCTTTTTGTGCTCGAGTCATGGTGAGAAGCATTGCTTAATAT
ATTCTCAGTACTGTATAAAACATCGCAACCCCGGAGGGGGGGGAGTACTA
GGGCAAGATGGATTACGGGGATGCTCCGCTGGTCAGGGCACCTTTTTTAA
CCTCCACGAGTCCCAGGTAGGGTCGCAAAAACACAAAAATAGAAAAATCA
GTCCCTCGTAGGGTGCCTATTTTTAGAAAATTTGGGGAAAAAGTAGAAAT
TTGAGAAAATTTTGGGATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAA
ATTTCGAGTCCCACGTAGGGTCCATTTTTCGAACCACAGCGGAGCAACCC
CGTCCGGTCGACAAGGGTAGTACCCCCCCCTCCCGGGATTGCAACACCGT
GCTCAACACTTTAGAAAAGATCTGTGTATCGCAAACTTTTTCAGCACATG
TTCTGAACAACCGATCCGTGGTTTGTTTGATTGTGGCATTCATCAGGATT
CAGTTTGTCAGTATTTTGTGTGACGGAAAATGCAAATGCATAGCTGACAC
AAAACGTCAAATCAATGTCAATTCAAGTAGTTTGTGTGTTAGAAACATGC
TGCAGTGACACTGTGGCGTTTCGTATAAAGTTATATCGTCGTCAACATCA
TAACGACGTATGGCCAGTTCTTTGTCAGTATTGTAAGAAATATTGCTCAA
TTGTGTTCATCACCATCCAAAACATCTCCACTTCGTTCTCAGCAACGTTT
AAAACATCGCATCGCTGTGCTTTGTACTGTGCAAACATTGTTACACAGTT
GACAAGAAGTGTACAATTTGTTATTCTATTTGAAAGATCGTGTTTGTTCT
TTTTTCCTCAGCCTCAATAATTATTATGATTGCTCTGGCTTAGGAGAAAT
CATGGAATTGAC Coding sequence (CDS) from alignment at scaffold_304:147902..150313- >TCONS_00058026 ID=TCONS_00058026|Name=TCONS_00058026|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_304:147902..150313- (Clytia hemisphaerica)
GTATCCACGTTACATCAATGAAGTTATATGCGATCCAAGAGACAGAGGAT
GTCTCACTGGGGGTGGTGAATGCGCAGAAAAAACCCTGAAATTACCGTTC
CGTAAAGACACACAGGGACTAGGATCTGATCAACTTTCTGAATGGACAAC
TTATGAACAGCCTATTCGCAGCTCATGTGAATGTGGCGTTTATCGGGATT
CGGTTTTCCAGTATTTTGTATAAATGTTGTACGGTTTCACGGATGCAGAG
GCTGCTAACTTCGTGCAAAGGTTCGACGATGATTTGACGGAGGTTGTCCA
AGCCTCTTGTCAAAACCAAGTTGAAAGGATTCAACGAAAAGATGTTCTTG
AAATGTATCGGAATATGAAAAGAACACAATGTTATGTTGAAAGTAAACAA
AGTGAAAACATTGAGAATAATAGTAATAATAGACGAAAACGTGACTTGGA
GAAATTCTTAGAAAATGATACGAAATCATCAATTGATAATATTACAAACT
TAGTGAATATAGACACTTTACGACATCGTTCGAGACGAAATACTGACGAA
CAGCGAACGATACAGAATACTGACGGAAGCGTAACGCGAATACGTAGATG
CGTACGACGTGGTGCTGTAACACGTAACGGTTTCGTTCGTATGTGTAGTC
TCTGTCACGCTGTCACCGTACTACCTGAAAATATGTATCCACGTTACATC
AATGAAGTTATATGCGATCCAAGAGACAGAGGATGTCTCACTGGGGGTGG
TGAATGCGCAGAAAAAACCCTGAAATTACCGTTCCGTAAAGACACACAGG
GACTAGGATCTGATCAACTTTCTGAATGGACAACTTATGAACAGCCTATT
CGCAGCTCATGTGAATGTGGCGTTTATCGGGATTCGGTTTTCCAGTATTT
TGTATAAATGTTGTACGGTTTCACGGATGCAGAGGCTGCTAACTTCGTGC
AAAGGTTCGACGATGATTTGACGGAGGTTGTCCAAGCCTCTTGTCAAAAC
CAAGTTGAAAGGATTCAACGAAAAGATGTTCTTGAAATGTATCGGAATAT
GAAAAGAACACAATGTTATGTTGAAAGTAAACAAAGTGAAAACATTGAGA
ATAATAGTAATAATAGACGAAAACGTGACTTGGAGAAATTCTTAGAAAAT
GATACGAAATCATCAATTGATAATATTACAAACTTAGTGAATATAGACAC
TTTACGACATCGTTCGAGACGAAATACTGACGAACAGCGAACGATACAGA
ATACTGACGGAAGCGTAACGCGAATACGTAGATGCGTACGACGTGGTGCT
GTAACACGTAACGGTTTCGTTCGTATGTGTAGTCTCTGTCACGCTGTCAC
CGTACTACCTGAAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058026-exon-scaffold_304-1575043694:149473..150313 | TCONS_00058026-exon-scaffold_304-1575043694:149473..150313 | Clytia hemisphaerica | exon |
| TCONS_00058026-exon-scaffold_304-1575043694:147902..149046 | TCONS_00058026-exon-scaffold_304-1575043694:147902..149046 | Clytia hemisphaerica | exon |
| TCONS_00058026-exon-scaffold_304-1510915933:149473..150313 | TCONS_00058026-exon-scaffold_304-1510915933:149473..150313 | Clytia hemisphaerica | exon |
| TCONS_00058026-exon-scaffold_304-1510915933:147902..149046 | TCONS_00058026-exon-scaffold_304-1510915933:147902..149046 | Clytia hemisphaerica | exon |
| TCONS_00058026-exon-scaffold_304-1491911889:149473..150313 | TCONS_00058026-exon-scaffold_304-1491911889:149473..150313 | Clytia hemisphaerica | exon |
| TCONS_00058026-exon-scaffold_304-1491911889:147902..149046 | TCONS_00058026-exon-scaffold_304-1491911889:147902..149046 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_304 | supercontig | scaffold_304:147902..150313 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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