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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057930 ID=TCONS_00057930|Name=TCONS_00057930|organism=Clytia hemisphaerica|type=transcript|length=2168bpRun BLAST on NCBI protein sequence of TCONS_00057930-protein >TCONS_00057930-protein ID=TCONS_00057930-protein|Name=TCONS_00057930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp MLEKAFTFFLLVSAVFAQIEEPCRQDAYPPPENSKIKTVVLNLDSAPEERRun BLAST on NCBI transcript from alignment at scaffold_302:332811..364805+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057930 ID=TCONS_00057930|Name=TCONS_00057930|organism=Clytia hemisphaerica|type=transcript|length=31995bp|location=Sequence derived from alignment at scaffold_302:332811..364805+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:332811..364805+ >TCONS_00057930 ID=TCONS_00057930|Name=TCONS_00057930|organism=Clytia hemisphaerica|type=CDS|length=18240bp|location=Sequence derived from alignment at scaffold_302:332811..364805+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057930 vs. Swiss-Prot (Human)
Match: ASAH1 (Acid ceramidase OS=Homo sapiens GN=ASAH1 PE=1 SV=5) HSP 1 Score: 385.956 bits (990), Expect = 1.759e-126 Identity = 174/367 (47.41%), Postives = 252/367 (68.66%), Query Frame = 2
Query: 425 EPCRQDAYPPPENSKIKTV---VLNLDSAPEERWPHIVGPYKEEMADLIGVIKDLV-----PAKVINFVDNYFPSILTRLPEPYAGEIKGVADATGLNLGEAILYNIFYEIFTACTSIVGEDESGKLYHARNLDFGLLMGWDNKNNTWAITERLRRMMINVEYQSNGKTVFKAVHFAGYIGILTAVKPQTFTLTMNERFALDGGYVGIFEWLLGISQGQWMGFLTRTTLLNATDYQTAVDMLSKTEMLAPAYFIVGGTKSGEATVITRSRQKAIDTWKMDKSKGEWFLLETNYDHWKKPLFIDDRRTPGNKCMNEVTQKGMGLKGLFNVLSTKPNLNKLTTYTALMQVDAGSLDTYLQDCPDPCWPW 1501
E CR+ YPP + V +NLD P +RW ++ + ++ +K+++ K++ VD P +L P P+ E+KG+A T + LGE I +NIFYE+FT CTSIV ED+ G L H RN+DFG+ +GW+ N+TW ITE+L+ + +N+++Q N KTVFKA FAGY+G+LT KP F+LT+NERF+++GGY+GI EW+LG W+GFLTRT L N+T Y+ A ++L+KT++LAPAYFI+GG +SGE VITR R++++D +++D +G W++++TNYD WK P F+DDRRTP C+N +Q+ + + +++VLSTKP LNKLT YT L+ V G +TYL+DCPDPC W
Sbjct: 29 EDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKGQFETYLRDCPDPCIGW 395 The following BLAST results are available for this feature:
BLAST of TCONS_00057930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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