TCONS_00057921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057921
Unique NameTCONS_00057921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057921 ID=TCONS_00057921|Name=TCONS_00057921|organism=Clytia hemisphaerica|type=transcript|length=1698bp
cctctcattttcagcattttggAAGTATTCCGAaagtattttcttattcc
tGAAAGGCTGAGAATGTTCTTGTAATCCTTATATTTTGGCCCTCGAGGCA
AATAAATGTTCTAACATGCGATgttctttttaaaaacatttagttGAATG
ATAGATGCTTTCCAGAAGTACTGTCATTCATAAAGTAGGCAGCTTATTGA
CGTTTTACCGTGACCTGTTCCAACCTTGACACCTATTTAAAGTATTaaaa
taacagaagaaaatATGATAACGCACATAATCAAAACAATGAACTTTGGC
GATATAAACTTATGACTTTTCAAAGCAAGAATATAAGAAACATCAGCAGA
GTGCACTGAAAAACTTTTGAGAAATATATGAACTAAAGTACGAGATGAAG
TTGTTGAAATTCGCTTTCGTGTTTTTGTTGGTTGTCTGTTTATTGACAAC
AGAGGCTGATgctaagaagaagaaaaagaagaaaacaaagaaaaacaaga
agatCATTATTGACAATTTCAACCGAAGAACTACAACGACAACGACAACA
ACTACAACTACACAAAACCTCCCTACAGAGCTTCCAATAACAGAGTCACC
AGAACTTCCCAAAGATGAAGGACCACAAATCTACGTTCCAGGAGATATTC
TCGATAAATTATCCAATGCTCAAAACGATGTTACAAGTTTTgtcaaaagt
ttcaaaccaGTTGGAGTCCAGCAAAAAGGAAACGTGTTGAGTTACATTAC
TGGTGGTGAAAGCAATGAAGTTATCAAATGGGCCAGTACCATTGATACAG
GGTGCAAACCAAGAGAAAAGCTTGAATGCATCGAAGAAAATAGTTACCTT
GTATGGCCTGGAATTCAAAAAGTGATGCGATGTGGAGAGTGTTGTGTTTT
ACCAGGACAAGTATGCAAAcctacaaagaaaagaaaagaatatcaATACT
TCTTCAAAATCCCAAGTGACGGTTCGCCTTGCGTCCCTATCAAACGTGAA
TTGACCCATCATGAAGCATGTGAATGCCAATGCAGAATTTCACCAGAAGA
CTGTTTACCCCAACAAACATTCAATAAACATCATTGCCAATGTGAATGCA
ATCTCAAGCCACAACCATGTCCACCAGGAAAAAGTTGGTCATATCATACA
TGTGGCTGTGCTTGCAATGATAAAGAAAGAGCCTGTCTCAAGCTATCAAG
AAAGATGATCTGGGATGACCGCAATTGTGAATGTGTTtgtaacaaagaaa
aagaagcttGCACAGAACGTGGAAAATTACTGGATATGTCTGACTGCAGG
TGCAAATGATATAACGGAATGACAAGGCACTACCATTGCACTATTCGAAA
GAAGATAACTTTGAAACTTAGTATCCAGAGATTGAGAACGAGATTTTATG
ACACAGTCGGTAAAAATGTAATATTGTTTAAATGAGATATTTCACTCAAA
TTATATTTAcattgaatttgaaatattttctataaaaaaatcatcacaTA
AATTTCTAAGGAACATACTTTTTTCATCGATTGTTTCATTCAAACCATTT
CCTTTCCCTCCATTCTAACATAAAATCTTCGATCTGTTGAAAGTAGAAAG
AAAAGAGATCAATAGTAAAAAGGTCGCagtttctttcaaagcaaaaggTT
CAGTAACTATcccaaaaatcattttcttatgTTTCTATAACTAATCAT
Run BLAST on NCBI

transcript from alignment at scaffold_302:249822..253924+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057921 ID=TCONS_00057921|Name=TCONS_00057921|organism=Clytia hemisphaerica|type=transcript|length=4103bp|location=Sequence derived from alignment at scaffold_302:249822..253924+ (Clytia hemisphaerica)
cctctcattttcagcattttggAAGTATTCCGAaagtattttcttattcc
tGAAAGGCTGAGAATGTTCTTGTAATCCTTATATTTTGGCCCTCGAGGCA
AATAAATGTTCTAACATGCGATgttctttttaaaaacatttagttGAATG
ATAGATGCTTTCCAGAAGTACTGTCATTCATAAAGTAGGCAGCTTATTGA
CGTTTTACCGTGACCTGTTCCAACCTTGACACCTATTTAAAGTATTaaaa
taacagaagaaaatATGATAACGCACATAATCAAAACAATGAACTTTGGC
GATATAAACTTATGACTTTTCAAAGCAAGAATATAAGAAACATCAGCAGA
GTGCACTGAAAAACTTTTGAGAAATATATGAACTAAAGTACGAGATGAAG
TTGTTGAAATTCGCTTTCGTGTTTTTGTTGGTTGTCTGTTTATTGACAAC
AGAGGCTGATgctaagaagaagaaaaagaagaaaacaaagaaaaacaaga
agatCATTATTGACAATTTCAACCGAAGAACTACAACGACAACGACAACA
ACTACAACTACACAAAACCTCCCTACAGAGCTTCCAATAACAGAGTCACC
AGAACTTCCCAAAGATGAAGGACCACAAATCTACGTATCTactattattg
ttattattattcaATCTATATATGCCTTCccattctaattgttagagtag
gtaaaaagtcaacaaaacaaaattttgcccTGGAACTTTTTGCAAAGAAA
TCATCAAGCATTCATAACTAGAATAGGCAGGATTATCGACGGTCTAACTA
GAGCTAAGTTACATCAACGAGCAACACTTTCCTCAAATCCTATCTCACTC
AAGACAATCAAGAACTGAGATCACATTTCAATAGTGCGTTAAGGCAGCTT
GTAAGAGTATTTTATGTAAAACCCTGTCCCAATATTTTCGAGCGGCATGT
AAGTATTACCTTAATATTTATTCATGTTTAGGTTCCAGGAGATATTCTCG
ATAAATTATCCAATGCTCAAAACGATGTTACAAGTTTTgtcaaaagtttc
aaaccaGTTGGAGTCCAGCAAAAAGGTACAACGACTTATTTAATCTCAAA
CTTTCgtcaaaaaacgcaaaaataaACTTTCATAAACCAGTCATTTTGTT
TAccattttaatgatttttattataattatttAAAAGTTTCTATCTCGCC
TTTTCGAGCTGTTGACGTACAGGGATTAATTTTCCTTCCCTTGTAGGAAA
CGTGTTGAGTTACATTACTGGTGGTGAAAGCAATGAAGTTATCAAATGGG
CCAGTACCAGTAAGTAttcaaaaattcatgatattcatgacgtaatcttt
tctacgGAAACACTCTGGTTTTGGCCAGTAATGGTAAAAGAAACTTAAGA
AAGTTATGCtaaagaaaaattgtttaaaaatttgcCACTAATGGCAAAGA
AACGTAAGgtaatgaatatcatgaatagaaaaaTACAATTAAGCAAAAGT
CAGTCTTTGTTACGAAAGAATGACACAATAGTTTGTAGAGGGGAATGAGC
TCCCCCAGGTTTATTTCACCCCCCCCCGTGTTGTANTTTAccattttaat
gatttttaatataattattTAAAAGTTTCTATCTCGCCTTTTCGAGCTGT
TGACGTACAGGGATTAATTTTCCTTCCCTTGTAGGAAACGTGTTGAGTTA
CATTACTGGTGGTGAAAGCAATGAAGTTATCAAATGGGCCAGTACCAGTA
AGTAttcaaaaattcatgatattcatgacgtaatcttttctacgGAAACA
CTCTGGTTTTGGCCAGTAATGGTAAAAGAAACTTAAGAAAGTTATGCtaa
agaaaaattgtttaaaaatttgcCACTAATGGCAAAGAAACGTAAGgtaa
tgaatatcatgaatagaaaaaTACAATTAAGCAAAAGTCAGTCTTTGTTA
CGAAAGAATGACACAATAGTTTGTAGAGGGGAATGAGCTCCCCCAGGTTT
ATTTCACCCCCCCCCGTGTTGTATTTTACCACGAAAAGTATGCAAACCCA
CAAAGACAAGAAATTAGTCAAGGTGGATCTTTATCTAATTATCAGCTTGT
AAAGAATCATACTATATGGCTAAAATAGTCGAGTCACTGATCTCTTAAAT
ATCTGACTTCACattccaaatatttgacaatTTATCACAGTTGATACAGG
GTGCAAACCAAGAGAAAAGCTTGAATGCATCGAAGAAAATAGTTACCTTG
TATGGCCTGGAATTCAAAAAGTGATGCGATGTGGAGAGTGTTGTGTTTTA
CCAGGACAAGTATGCAAAcctacaaagaaaagaaaagaatatcaATACTT
CTTCAAAATCCCAAGTGACGGTAAATAAGCTATTTGGGTGATTTTAAGTT
CGGAAAATGCACCAAGAATCATTCATTTAATTAATGTTAATgttataaaa
gtaaaaattaaaCTTGCAAAGAAACccttcgaaaaaaaatcttttaaata
tttGGACGAACTAAGaccagcccccccccctccttgaaaaatgaaaaaac
actccATTAgacccctggaaatgttcgtccacccccaccccctgtatgga
tataaaatggaatggcctaTTGTCACTCTAAAATTCAGGAGAAATTTTTC
TCGCAATGCCTAAAGAGGTATTTCTTAAAGAATGTCATAAAAACTGAAAA
TCATTTCTGACCTTCTTTGTCTCGTCAGGTTCGCCTTGCGTCCCTATCAA
ACGTGAATTGACCCATCATGAAGCATGTGAATGCCAATGCAGAATTTCAC
CAGAAGACTGTTTACCCCAACAAACATTCAATAAACATCATTGCCAATGT
GAATGCAATCTCAAGCCACAACCATGTCCACCAGGAAAAAGTGTAAGTCA
TTGTTTTGTAATATTGTTATCCTTTGAAACATTTAAAGTTGAATTGTTTA
AAGTTGGAATCAAATatcataaaaatgtaaataccgggtgtcccagaaaa
aagtccccctatttgaagtgaattttctcgcgTTCTATGAACTGTTGAAG
AAACGATCCATTTGCATTGAAAAGAGGAAGGATAGACTTAAAGTTTGAGG
GgtcattttgttaaatttggtcaactagataAAAAGTTGTggcctaaatg
ctaaaacattacttaaaaaagaaaagttaaaaaaaagcgAAATTTGACAG
ACAAAccctcaaaatttatttttatccttCCTCCTTCCAATGCAAAAGGA
TCAATTCTTTAACAGTTTACCGAACTCAAAATAATTCACCTCAAAGAGGG
GACTTTTTTCTGAGACACCCGGCACCTTTTTAATACACATAATTCTTTCA
CATGTTTCTCGCAAGGCTAGTTGAACAGGTTTTAGGAATTTTAAAGGATC
TTGCAAATTTCGTTGCACTTTCGGAGGCTCAATTCGGTTTTAATGACATC
CTACTATCAGTTCTGTTCTTTTTCTAAAGATTCAATGgaattattattta
aaaatttgagcATGTCTTACAAGCCCTCATTTCTTTGCAGTGGTCATATC
ATACATGTGGCTGTGCTTGCAATGATAAAGAAAGAGCCTGTCTCAAGCTA
TCAAGAAAGATGATCTGGGATGACCGCAATTGTGAATGTGTTtgtaacaa
agaaaaagaagcttGCACAGAACGTGGAAAATTACTGGATATGTCTGACT
GCAGGTGCAAATGATATAACGGAATGACAAGGCACTACCATTGCACTATT
CGAAAGAAGATAACTTTGAAACTTAGTATCCAGAGATTGAGAACGAGATT
TTATGACACAGTCGGTAAAAATGTAATATTGTTTAAATGAGATATTTCAC
TCAAATTATATTTAcattgaatttgaaatattttctataaaaaaatcatc
acaTAAATTTCTAAGGAACATACTTTTTTCATCGATTGTTTCATTCAAAC
CATTTCCTTTCCCTCCATTCTAACATAAAATCTTCGATCTGTTGAAAGTA
GAAAGAAAAGAGATCAATAGTAAAAAGGTCGCagtttctttcaaagcaaa
aggTTCAGTAACTATcccaaaaatcattttcttatgTTTCTATAACTAAT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036524XLOC_036524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057921-exon-scaffold_302-1491911889:249822..250455TCONS_00057921-exon-scaffold_302-1491911889:249822..250455Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:249822..250455TCONS_00057921-exon-scaffold_302-1510915933:249822..250455Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:249822..250455TCONS_00057921-exon-scaffold_302-1575043694:249822..250455Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1491911889:250803..250896TCONS_00057921-exon-scaffold_302-1491911889:250803..250896Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:250803..250896TCONS_00057921-exon-scaffold_302-1510915933:250803..250896Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:250803..250896TCONS_00057921-exon-scaffold_302-1575043694:250803..250896Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1491911889:251068..251130TCONS_00057921-exon-scaffold_302-1491911889:251068..251130Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:251068..251130TCONS_00057921-exon-scaffold_302-1510915933:251068..251130Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:251068..251130TCONS_00057921-exon-scaffold_302-1575043694:251068..251130Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1491911889:252012..252191TCONS_00057921-exon-scaffold_302-1491911889:252012..252191Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:252012..252191TCONS_00057921-exon-scaffold_302-1510915933:252012..252191Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:252012..252191TCONS_00057921-exon-scaffold_302-1575043694:252012..252191Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1491911889:252550..252713TCONS_00057921-exon-scaffold_302-1491911889:252550..252713Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:252550..252713TCONS_00057921-exon-scaffold_302-1510915933:252550..252713Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:252550..252713TCONS_00057921-exon-scaffold_302-1575043694:252550..252713Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1491911889:253362..253924TCONS_00057921-exon-scaffold_302-1491911889:253362..253924Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1510915933:253362..253924TCONS_00057921-exon-scaffold_302-1510915933:253362..253924Clytia hemisphaericaexon
TCONS_00057921-exon-scaffold_302-1575043694:253362..253924TCONS_00057921-exon-scaffold_302-1575043694:253362..253924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:249822..253924 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.162746	0	0	0.670768	0.627965	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.763491	0.579081	1.17998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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