TCONS_00057907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057907
Unique NameTCONS_00057907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057907 ID=TCONS_00057907|Name=TCONS_00057907|organism=Clytia hemisphaerica|type=transcript|length=821bp
AGATGAATAAAATGCAAAGccaggtcaaaatttcaagttttgcaGATTTG
ACAGAGGATAAACAGTAGCCTTGTCTTTTGACTGTTAAATCACTTgtgga
tttaagacaatagagcagcTAAGTCGGTAACATGCAAAAGAGTGCAATGC
TCGTTAAAAGACAgtaaaattacaattacaaaccTCTGCTTCTGATAAGT
TCGAtgtggtctaaaaccgcctatgaaAATTAAGGAGAATAATTCCCTAG
CTCTACAGCAACACCACATTGCGAATGTCAGTCTTCAAACTAGATTTCTT
AAAATCGAAAGTACAAAAGTTTGTGTAAGTTCCATTTTTAATCATAAAGT
AATTACAGTATTACAAATTTCAGATTTACAAATACCAAAAATATAGGACT
TAAATATAACGTCATGTTGtgcataaataaataaaataatttcaagtTGT
AGGacaattaaataatttttgtcgGAATCATTTTTGTCAAATTGAAAGGA
AAAGTGACTTTGTTGAAGTGGTAATTTCTAataaagtttgttaaattttc
ttCCACTGTACTGCTATAAAAATTCTCACAGTATGtcacaaaattatttt
atcaaatcaccaaaataagttccacTTTAAAATTGGGGAATGGGCCTATT
CATGATGAGTTCCTTCATGTCTaaatttctacaatttttttataaaaaat
actacagtttcaatagaaaaataatgttttgttttaaaatgacATGAACA
AATTACaatttgtttttcatgtttGATGAAAGAGTTTACAAAACAATTAC
AATTTACAAATTGTTATTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_301:28871..29691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057907 ID=TCONS_00057907|Name=TCONS_00057907|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at scaffold_301:28871..29691 (Clytia hemisphaerica)
TGAAATAACAATTTGTAAATTGTAATTGTTTTGTAAACTCTTTCATCaaa
catgaaaaacaaattGTAATTTGTTCATgtcattttaaaacaaaacatta
tttttctattgaaactgtagtattttttataaaaaaattgtagaaatttA
GACATGAAGGAACTCATCATGAATAGGCCCATTCCCCAATTTTAAAgtgg
aacttattttggtgatttgataaaataattttgtgaCATACTGTGAGAAT
TTTTATAGCAGTACAGTGGaagaaaatttaacaaactttatTAGAAATTA
CCACTTCAACAAAGTCACTTTTCCTTTCAATTTGACAAAAATGATTCcga
caaaaattatttaattgtCCTACAacttgaaattattttatttatttatg
caCAACATGACGTTATATTTAAGTCCTATATTTTTGGTATTTGTAAATCT
GAAATTTGTAATACTGTAATTACTTTATGATTAAAAATGGAACTTACACA
AACTTTTGTACTTTCGATTTTAAGAAATCTAGTTTGAAGACTGACATTCG
CAATGTGGTGTTGCTGTAGAGCTAGGGAATTATTCTCCTTAATTttcata
ggcggttttagaccacaTCGAACTTATCAGAAGCAGAggtttgtaattgt
aattttacTGTCTTTTAACGAGCATTGCACTCTTTTGCATGTTACCGACT
TAgctgctctattgtcttaaatccacAAGTGATTTAACAGTCAAAAGACA
AGGCTACTGTTTATCCTCTGTCAAATCtgcaaaacttgaaattttgacct
ggCTTTGCATTTTATTCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036514XLOC_036514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057907-exon-scaffold_301-1491911889:28871..29691TCONS_00057907-exon-scaffold_301-1491911889:28871..29691Clytia hemisphaericaexon
TCONS_00057907-exon-scaffold_301-1510915933:28871..29691TCONS_00057907-exon-scaffold_301-1510915933:28871..29691Clytia hemisphaericaexon
TCONS_00057907-exon-scaffold_301-1575043694:28871..29691TCONS_00057907-exon-scaffold_301-1575043694:28871..29691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_301supercontigscaffold_301:28871..29691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326448	0.221768	0	0.192646	0.156352	0	0.298119	0.279096	0.360191	0.448794	0	0.231647	0.46265	0.0800777	0.139573	0.227875	0.0460761	0.351507	0.213912	0.518874	0.403026	0.082016	0.358564	0.374076	0.12448	0.444382	0.336403	0.0941623	0.346178	0.425778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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