TCONS_00057776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057776
Unique NameTCONS_00057776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057776 ID=TCONS_00057776|Name=TCONS_00057776|organism=Clytia hemisphaerica|type=transcript|length=676bp
CAACATTTCAAGAGTgtcctcaaatcaaaacaagagTTGCTTCAATCTTG
GAGCAGGGACGATCCCTCTGCAACTTCATCCTGTATGTGTAAAAAGAAAC
CAGAATTGAGAACGGAGGAAGATTCCGAGAACTATGGATTGAAATGTTTC
TTGATGAACAAAAACTATTGGAAGACTCCCCCTTATTGGACCGGACCAGA
CTTTGTAGCATGCGTGAACACAGCCAACAATACGCATTGGTGTTTAAGGA
CCATCAATTCTACGCATAATTTCCTCTACTGTAAATATTGAACAGGCTTC
GTGGAATACTTTGATATGATGGAAGACCCTTATCAGCTTGTACACCAACG
CTGACAACATGAAGGCCGACTTTCGAACTACTGCATATGAGAAAATGTCG
TGGCACCAAAGAATGTTTCTTGAAAGCTTCACAATCTATCTTTCTCTGTC
AGAAGGGATATTCTTCGCAAGTATCGCATTACGAACGGAAAAAAGGACAT
AGAATCTTTGTTCGGAGACCCTTATTTCACGGCTCGACGGTGTCGCAAGA
AGGCAACAAATACATGTACAATGAACGGGACAGACCGATccctttgtaat
ttttttgaagtgAATTTATCCATCAGATATAAAATTTATACACTGGCCAT
AACTTCAGTATTTTCCTTACTTTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_298:276337..282347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057776 ID=TCONS_00057776|Name=TCONS_00057776|organism=Clytia hemisphaerica|type=transcript|length=6011bp|location=Sequence derived from alignment at scaffold_298:276337..282347- (Clytia hemisphaerica)
CAACATTTCAAGAGTGTCCTCAAATCAAAACAAGAGTTGCTTCAATCTTG
TATGTACTACTCTAACTAGCCCGGGGGCCACTTATTGCTTTTTGATAAAC
TTGATGGCGCTGATAAGTGGCCCGGTGTAATTTGGCAGGCTCCATTTTTT
GGCTTTGCTTGAAAACGAAAGTGAAAAAAATCAAGATGCCAAAATCCTCT
AGTCTACTTCACTAGACTCAGCGCCATCAAAATCTTCAGAAAGCAAAGTT
CAGTCAGAAGTAGACTCTAGTCTAAACTCTAACGGATATGAAAAACAGCC
AGTACCGTCACACCGTGAAACCCGTACGTCCCTAACTAACTACAGTAAAA
TTTTCCCTACCAAAATACAGTAAAGTCTCTTAACCCTTTAACTACCAATG
ACGAGTATACTTGACATGGGCTATATAGGACAGGAGGGCGAAGCCCAGTT
TGAGTTAGAAATCGTCATTTTTAGTCTAACTCGTAGGAATTGGATTTGGT
TTCATGGTCAAGCAAAAAAAAGTCAAAAGTGAGTTTTTCCATCGAGATTT
TAAGCCAAAAAGTAAAAAAAATGCTAAAATTTGACAAAAATCCACTTTTT
TAAGATTTTGACCGTTTTTTGACCATTTTTGGTCAACGAGTGATCAAAGA
ACCTCTAAATTTGGCCCTGCTTTACTTGATTCTGTCCTCCAGCGAATTAA
TTTGAAGATTTACCACTGGGCACCTTTCTATCATTCAGGCAGGTCCGCGC
AGTTTCCTAATTTGTCCGGCGCCGCAGGCGCCTAAAAGAAAGAAGAGACT
CTAAGCTATCCAATGAGCTATAAACGAGCTTCTAACTCCTTCTAGATCCG
GAGATATAAGCTTTTAAAGTTTGAACTAGCGATTTTATTTAAAAAACTTA
GAAAAAAAGGATCGTGGTACTTAAAGGGTTAACTCAAACCTCTATAACTC
ATATGTCTCCTTAACGTGAACAACTTTTCTTGTCCCTTTTGTTAACAATG
CCTTATAAACAATACTCCATAACTCGAAATTTCGACAACTTTGTGTTTCC
CGAGTGTGTTCGAGTTATGGAGACTCCACTGTATGCTTAATAAAGTTTCT
ATAACTCGAAAAAATCCAATACCCCGTTCGAGTTATAGAGACTCCACAGT
AGAAACTTTAAAATTAAAATCTTGAGGCATTAGCCATTTATGCAGCTGTT
ACGTTATTAGGCTTCTGCTCATCCTCTAGCGAAAAAAGTTTCTTATATAG
GAAGTATATCTATAGAGGTTTGCGATTCAGACTATTACGTTATGGTATGT
TCTATTCTATTCGGATAAGCGAGCATAAAACTACTCAAAACACTGAGTGT
CGAGCTTTACATAGTCACTTGTGATGAGCGGAAAAGTATATAGATATAAT
CTTGCTGAACACATCGAGCCTCGATACGATTTTCTCGTACGTACCCAGCT
GGCACACAACGTTGTTTCAACATTCATCTTACGTTATATGAACATTGTGA
CCATCACATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGATACCTATT
CTTTTTACAGGGAGCAGGGACGATCCCTCTGCAACTTCATCCTGTATGTG
TAAAAAGAAACCAGAATTGAGAACGGAGGAAGATTCCGAGAACTATGGAT
TGAAATGTTTCTTGATGAACAAAAACTATTGGAAGACTCCCCCTTATTGG
ACCGGTAAGTGTAAAACCTCGGGTAAGTTATGGCATGTCTTAAAATAGCA
TACCCTACCGTAGCGAATCTAAAAATAGACATTGAATTTTCTGTTTGACC
GAATTTCAATCCCGTCAACCTTTGCGTTCATTACGCTTGCACGCAAATTA
CTATCAATTACAAAGAAAAAGTAACAACTTTCACAAGTTTTGAATTAAAA
AAAAAGGATTGTGGGATTGAATTTCGGTCAAATGAGAGAAGTAATAGTAG
TGACGTTTGCACGACGAAGCGCTATTACCATAATTTTTAGATCACATTAG
TCGACAGAAAATGACCAAACAAATGAATGATGAGTATGAAGGGTACTATG
ATGTAGTTTTTAACCTGATGTGTAACCTAATTGTTTTTTCGCTGATTTTC
GCGAAAAACCGCAAAAACTGATTATTACGTAATAATCGATGACGCCATCA
AAACTAAAAATTGAATTTCTCAAGAATGGTTTATCTAATCGTCTTCAAAC
TTTCACCGAAGATGTATCTTACTAAAGTCGATCATTTGAAAAAAATTTTT
TTCAAGATTTTGATGACGTCAGCAGAAAATAGGATTTTTCAATTTTTACT
AATTTCTGCTGACGTCATCAAAATTTCCAAAAAAAATTTTTTTCAAATGA
TCGACTTTAGTTAGATACATCTTTGGTGAAACTTTGAAGACAATTGGATA
AACCATTCTTGAGAAATTCAATTTCTAGTTTTGATGACGTCATCGATTAT
TACGTAATAATCAGTTTTTGCAGTTTTTTGCGAAAATCAGAGAAAAAACA
ATTAGGTTACACATCAGGTTAGAAACTATATCGTAGTACCCTTCATGTTC
ATTCAATTGTTTGGTCATTTTCTGTCGACTAATGCGATTTAAAAATTATG
GTAATTTTCAGTTTTTGATACATGCCATAACCATGAACATATAAACGACT
GGACATCTATCTTTTATTGTCTCTTTGAAGCGAGCTTCGTTGCCGCCTGT
ATTTCAAAATTGGTATGAAAAATCCGACAATATTCCGTCATAATTTTATT
TCTTTGAATTTTTTAGGTAAAAAGATTGATAGAGCTTGAACATTACTCAT
AATGTACAAAACAATTATTTTCGAATTTTTTTACAAGTTTGTTATATATT
TTATAAACATTTTCAACTCTGAAATGCAGAATTTCAACTGCGTGTATACT
TTTGAATCCCTTTTTTCACTCCAATAACTTTTTTTATGACTTGAAAAAAA
TAGGTTGCCAAAGTTGAGAGCCTGTGTAATAAGAATATCGAAATTAGAAT
GTGACGCTCTTTAAAATTATTAAACACTTTTAAGTCAAAATTTAGAAATA
TTAGTCGGAGTTTTGACAAGCTGACGATAATTTTGCCTCTGTTATCTTTG
TTATGATATAGATAANGATTTGGCTGAAAAGCGACCCTTATAGTGTAATT
TTTCGAATCTTTTTGCCCTTTCAGGGCAAAATCTTTTGAAATTTCTCAAA
TTTTACCTCAAAATTTGATATTTTATAAAATTTTACAGGGAAAGCACCTT
TTTATATATTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTT
AGTACAGTGTACTAAAAAGGGTGGTGGTCTAATTTTTTGGAAAAAAATCC
AAAAATCAAGTTAGTACCCTATGGTCCAGTACACTGACTTGGTACCCCGG
CCCCCCCTGCAACAGAGACTTTTGTCGAAGTTTTGATGTCGTTAGCAAGG
TATTCCCAAGTGGTATATCATCAAAATCTATTGTTTCATTTTATACTTTT
AACGAAGCGGCAACGAAGCTACCTGTGTTATCTTTAAAAAGACAAAGGAG
ATGGATGTCCAGTCGTTTATATGTTCATGGTGTTATGGAGTGATAATGAG
TTAAAAAAGCGCGGTCAAACAGTTTTTGGTTGGTTTCATGCCGTGATGAG
AGAATATTTTTGGTCTGGTGGGTGCTCATTACAATAGCATTTATTCACCA
CAATACCTGTATTTTTGTGAAATTAAGTGATTTTTCTATTCCCAGGACCA
GACTTTGTAGCATGCGTGAACACAGCCAACAATACGCATTGGTGTTTAAG
GACCATCAATTCTACGCATAATTTCCTCTACTGTAAATATTGAACAGGCT
TCGTGGAATACTTTGATATGATGGAAGACCCTTATCAGGTAGGTGAATTA
AAAAGTGTTATCAAATTAGTAATTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTC
GTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGT
TCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTC
GCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGT
TCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTC
GTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGT
TCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTC
GTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGT
TCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTC
GTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGT
TCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTC
GTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGC
TCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTC
GTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGT
TCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTC
GTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGT
TCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTC
GCTCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTTCGTTCGTTCGT
TCGTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTTGTTCGCTCGC
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGCTTTAAA
ATAAAACGTAACGTTACGCTCTCATATTTCTTCATAGCTTGTACACCAAC
GCTGACAACATGAAGGCCGACTTTCGAACTACTGCATATGAGAAAATGTC
GTGGCACCAAAGAATGTTTCTTGAAAGCTTCACAATCTATCTTTCTCTGT
CAGAAGGGTAAGAGCTTTCTGAAAAAGTACTAAAAGTCTAAAAGTATTTT
AAAATCATCATATTTTGTACGTTTTCGTCTTTCACTTCAGGTCTGAAAAT
TACATCTTTTCGTGAATGCGAACTATGAACGTTAGATTAGTTAATAGCCT
TTAATAGAGTAGATCTTTATTATCTTTCGATATTTTTTCAGGATATTCTT
CGCAAGTATCGCATTACGAACGGAAAAAAGGACATAGAATCTTTGTTCGG
AGACCCTTATTTCACGGCTCGACGGTGTCGCAAGAAGGCAACAAATACAT
GTACAATGAACGGGACAGACCGATCCCTTTGTAATTTTTTTGAAGTGAAT
TTATCCATCAGATATAAAATTTATACACTGGCCATAACTTCAGTATTTTC
CTTACTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036417XLOC_036417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057776-exon-scaffold_298-1575043694:282299..282347TCONS_00057776-exon-scaffold_298-1575043694:282299..282347Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1575043694:280644..280787TCONS_00057776-exon-scaffold_298-1575043694:280644..280787Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1575043694:278060..278202TCONS_00057776-exon-scaffold_298-1575043694:278060..278202Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1575043694:276741..276860TCONS_00057776-exon-scaffold_298-1575043694:276741..276860Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1575043694:276337..276556TCONS_00057776-exon-scaffold_298-1575043694:276337..276556Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1510915933:282299..282347TCONS_00057776-exon-scaffold_298-1510915933:282299..282347Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1510915933:280644..280787TCONS_00057776-exon-scaffold_298-1510915933:280644..280787Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1510915933:278060..278202TCONS_00057776-exon-scaffold_298-1510915933:278060..278202Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1510915933:276741..276860TCONS_00057776-exon-scaffold_298-1510915933:276741..276860Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1510915933:276337..276556TCONS_00057776-exon-scaffold_298-1510915933:276337..276556Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1491911889:282299..282347TCONS_00057776-exon-scaffold_298-1491911889:282299..282347Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1491911889:280644..280787TCONS_00057776-exon-scaffold_298-1491911889:280644..280787Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1491911889:278060..278202TCONS_00057776-exon-scaffold_298-1491911889:278060..278202Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1491911889:276741..276860TCONS_00057776-exon-scaffold_298-1491911889:276741..276860Clytia hemisphaericaexon
TCONS_00057776-exon-scaffold_298-1491911889:276337..276556TCONS_00057776-exon-scaffold_298-1491911889:276337..276556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:276337..282347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.63919	0	1.26972	1.00582	0.196771	0	0.341839	0.173031	0.305038	0.361448	0.100683	0.521715	0	0	0	0	0	0	0	0.0893969	0.844384	1.54972	0	0	0	0.230496
Blast
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BLAST of TCONS_00057776 vs. Swiss-Prot (Human)
Match: SULF1 (Extracellular sulfatase Sulf-1 OS=Homo sapiens GN=SULF1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.197e-23
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  136 GLKCFLMNKNYWKTPPYWTGPDFVACVNTANNTHWCLRTINSTHNFLYCKY*TGFVEYFDMMEDPYQLVH 345
            GL CF  + N+W+T P+W    F AC ++ NNT+WCLRT+N THNFL+C++ TGF+EYFDM  DPYQL +
Sbjct:  743 GLTCFTHDNNHWQTAPFWNLGSFCACTSSNNNTYWCLRTVNETHNFLFCEFATGFLEYFDMNTDPYQLTN 812
The following BLAST results are available for this feature:
BLAST of TCONS_00057776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SULF16.197e-2357.14Extracellular sulfatase Sulf-1 OS=Homo sapiens GN=... [more]
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