TCONS_00057766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057766
Unique NameTCONS_00057766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057766 ID=TCONS_00057766|Name=TCONS_00057766|organism=Clytia hemisphaerica|type=transcript|length=825bp
NCAAATTTCTCTTTGTagcaaaagatttaccacATTCTCGACATTTAAAA
AGCCTTATACCTTGATGAACAGTTCTTTGATGAGAAGTTAATTTCCTTTT
CTCTGcgaaacatttaccacattcttgacatttaaaggcttttatACCTT
GATGGACTGTTCTTTGGTGCCTCAACAAATTTCTCTTTGTagcaaaagat
ttaccacattcttgacatttaaaAGGTTTATGATATATCGTTCTTTGATG
TTCTTTAACCGAACTTTTCGTTATTTCGTCAATGTTTGGATTTTCGATCT
TGTCAGCCTCAAAACATTCCtgcttattttcattttcatggttttgaaac
aatttatcttcaaatttaATAGTGATTTCCTCACCGATCTGTGAATTCAT
TTCCTTAATCAGTGAAAATTGATCAAAACAATTCGTTCCATCGTTAATAT
TTACTACACTTTGATTCTTATCATCTAGAGATTTTAACTCATCTTCAAGT
TTAATGGcgattttataatttttgggGTCAGTTTCTTCGGTTGAAGTAAC
ATCGTTCCCCTTTACATTTCTACAAGAATTATTAAAAAGTTCACTTTCAT
GGTTTTTTAATGGTTCCAAAATTGCGTCGTCTGGAAATccaattgattca
tttttcagtttgataataatttccaaATTATTATGAATTGTTTCATCACA
ACcatgatcttcttcttcttcaatttttatttctatttcttcaatctcat
tcatttcatttaaacaaaATGCTCtaagataaaagaaaaatacagTAACA
GAATTGAAATTATTATGTTTGAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_298:67726..69203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057766 ID=TCONS_00057766|Name=TCONS_00057766|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_298:67726..69203- (Clytia hemisphaerica)
NCAAATTTCTCTTTGTAGCAAAAGATTTACCACATTCTTGACATTTAAAA
GGTTTATCATATATCGTTCTTTGATGTTCTTTAACCGAACTTTTCGTTAT
TTCGTCAATGTTTGGATTTTCGATCTTGTCAGCCTCAAAACATTCCTGTT
TATTTTCATTTTCATGGTTTTGAAACAATTTATCTTCAAATTTAATAGTG
ATTTTTTCACCGATCTGTGAATTCATTTCCTTAATCAGTGAAAACTGATC
AAAACAATTCGTTCCATCGTTAATATTTACTACACTTTGATTCTTATCAT
CTAGAGATTTTAACTCATCTTCAAGTTTAATGGCGATTTTATAATTTTTG
GGGTCAGTTTCTTCGGTTGATGTAACATCGTTCCCCTTTACATTTCTACA
AGAATTATTAAAAAGTTCACTTTCATGGTTTTTTAATGGTTCCAAAATTG
CGTTGTCTGGATATCCAATTGATTCATCTTCAAGTTTGATAATAATTTCC
AAATTATTATGAATTGTTTCATCACAACCATGATCTTCTTCTTCTTCAAT
TTTTATTTCTATTTCTTCAATCTCATTCATTTCATTTAAACAAAATGCTC
TAAGATAAAAGAAAAATACAGTAACAGAATTGAAATTATTATGTTTGAAA
AGATTTAAAGCAGTCCTNTAGCAAAAGATTTACTACATTCTCGACATTTA
AAAAGCCTTATACCTTGATGAACAGTTCTTTGATGAGAAGTTAATTTCCT
TTTCTCTGCGAAACATTTACCACATTCTTGACATTTAAAGGCTTTTATAC
CTTGATGGACTGTTCTTTGGTGCCTCAACAAATTTCTCTTTGTAGCAAAA
GATTTACCACATTCTTGACATTTAAAAGGTTTATGATATATCGTTCTTTG
ATGTTCTTTAACCGAACTTTTCGTTATTTCGTCAATGTTTGGATTTTCGA
TCTTGTCAGCCTCAAAACATTCCTGCTTATTTTCATTTTCATGGTTTTGA
AACAATTTATCTTCAAATTTAATAGTGATTTCCTCACCGATCTGTGAATT
CATTTCCTTAATCAGTGAAAATTGATCAAAACAATTCGTTCCATCGTTAA
TATTTACTACACTTTGATTCTTATCATCTAGAGATTTTAACTCATCTTCA
AGTTTAATGGCGATTTTATAATTTTTGGGGTCAGTTTCTTCGGTTGAAGT
AACATCGTTCCCCTTTACATTTCTACAAGAATTATTAAAAAGTTCACTTT
CATGGTTTTTTAATGGTTCCAAAATTGCGTCGTCTGGAAATCCAATTGAT
TCATTTTTCAGTTTGATAATAATTTCCAAATTATTATGAATTGTTTCATC
ACAACCATGATCTTCTTCTTCTTCAATTTTTATTTCTATTTCTTCAATCT
CATTCATTTCATTTAAACAAAATGCTCTAAGATAAAAGAAAAATACAGTA
ACAGAATTGAAATTATTATGTTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036411XLOC_036411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057766-exon-scaffold_298-1575043694:69171..69203TCONS_00057766-exon-scaffold_298-1575043694:69171..69203Clytia hemisphaericaexon
TCONS_00057766-exon-scaffold_298-1575043694:67726..68517TCONS_00057766-exon-scaffold_298-1575043694:67726..68517Clytia hemisphaericaexon
TCONS_00057766-exon-scaffold_298-1510915933:69171..69203TCONS_00057766-exon-scaffold_298-1510915933:69171..69203Clytia hemisphaericaexon
TCONS_00057766-exon-scaffold_298-1510915933:67726..68517TCONS_00057766-exon-scaffold_298-1510915933:67726..68517Clytia hemisphaericaexon
TCONS_00057766-exon-scaffold_298-1491911889:69171..69203TCONS_00057766-exon-scaffold_298-1491911889:69171..69203Clytia hemisphaericaexon
TCONS_00057766-exon-scaffold_298-1491911889:67726..68517TCONS_00057766-exon-scaffold_298-1491911889:67726..68517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:67726..69203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1859	20.4808	16.3183	13.9476	1.35928	0.772925	3.71204	2.49465	2.38337	0.784942	1.22577	1.37995	0.568484	1.42193	0.46301	0.611563	1.25909	1.63793	0.877378	0.542357	3.11911	3.50517	22.4169	21.2942	0.600995	0.779968	1.94591	1.28932	10.7523	12.9627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00057766 vs. Swiss-Prot (Human)
Match: ZSC20 (Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens GN=ZSCAN20 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 2.631e-20
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = -3 
Query:    2 SSVKEHQRT-IYHKPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECGKSFATKRNL 265
            S++  HQR     KP++C ECGKSF+    L  HQRT H G K +KC +CGKCF+E+ KL +HQR VH G + +KC ECGK F  + NL
Sbjct:  888 SALISHQRIHTGEKPYECAECGKSFSKSSTLANHQRT-HTGEKPYKCVDCGKCFSERSKLITHQR-VHTGEKPYKCLECGKFFRDRSNL 974

HSP 2 Score: 88.9669 bits (219), Expect = 1.522e-19
Identity = 51/115 (44.35%), Postives = 66/115 (57.39%), Query Frame = -3 
Query:    2 HENENKQECFEADKIENPNIDEITKSS-VKEHQRT-IYHKPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECGKSFATKRNL 340
            H  E   EC E  K         +KSS +  HQRT    KP+KC +CGK F+ +  L+ HQR VH G K +KC ECGK F ++  L +HQR +H G + +KCRECGK F    +L
Sbjct:  897 HTGEKPYECAECGK-------SFSKSSTLANHQRTHTGEKPYKCVDCGKCFSERSKLITHQR-VHTGEKPYKCLECGKFFRDRSNLITHQR-IHTGEKPYKCRECGKCFNQSSSL 1002

HSP 3 Score: 86.2705 bits (212), Expect = 1.200e-18
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = -3 
Query:   20 QNHENENKQECFEADKIENPNIDEITKSSVKEHQRT-IYHKPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECGKSF 346
            + H  E   +C +  K  +       +S +  HQR     KP+KC ECGK F  + NL+ HQR +H G K +KC+ECGKCF +   L  HQR +H G + +KC ECGK F
Sbjct:  923 RTHTGEKPYKCVDCGKCFS------ERSKLITHQRVHTGEKPYKCLECGKFFRDRSNLITHQR-IHTGEKPYKCRECGKCFNQSSSLIIHQR-IHTGEKPYKCTECGKDF 1024

HSP 4 Score: 82.4185 bits (202), Expect = 2.072e-17
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = -3 
Query:    2 HQRT-IYHKPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECGKSFATKRNL 250
            HQR     KP+KC ECGK+F+ + NL  HQR +H G K +KC ECGK F++   L +HQR +H G + +KC EC KSF    NL
Sbjct:  728 HQRIHTGEKPYKCLECGKNFSDRSNLNTHQR-IHTGEKPYKCLECGKSFSDHSNLITHQR-IHTGEKPYKCGECWKSFNQSSNL 809

HSP 5 Score: 82.0333 bits (201), Expect = 2.844e-17
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = -3 
Query:    2 NPNIDEITKSSVKEH-QRTIYH-------KPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECGKSFATKRNL 292
            NP+ ++  +SS +E  ++ I H       KP+KC  C KSF+   + + HQR +H G K +KC ECGK F+++  L +HQR +H G + +KC ECGKSF+   NL
Sbjct:  679 NPSQEQWQESSSEEDLEKLIDHQGLYLAEKPYKCDTCMKSFSRSSHFIAHQR-IHTGEKPYKCLECGKNFSDRSNLNTHQR-IHTGEKPYKCLECGKSFSDHSNL 781
The following BLAST results are available for this feature:
BLAST of TCONS_00057766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSC202.631e-2051.69Zinc finger and SCAN domain-containing protein 20 ... [more]
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