TCONS_00057624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057624
Unique NameTCONS_00057624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057624 ID=TCONS_00057624|Name=TCONS_00057624|organism=Clytia hemisphaerica|type=transcript|length=430bp
GAGAAATCTGCCTTTTAATTATACAAATATATAGAAAGAAAGATCAGTTC
TAGCtctttccaacgatgtataaaTATTGATAGGTTGTAAAGGATTTTCA
CTATGCCAGCTTGGCTCAAAGATTCCTCCTGtcgaaaagacaaaaaaaga
ttttagcttaaaaaaattgacgttgcCAATAGAAAAGGCCAGTAGAAAAT
ACTGGAACCAGAAATGAATTATACAACTAAATCATGTCAAAGAGgatgaa
aaatgccaaaaaatgaTGTATTGATGTCTATAGGTTGTAATTCATTTCAT
CTATGCTTTTTTGTCTTGAAGTTTTGAGTACCTCCTTATTCTAAAGAATT
AACGTCAAGTTTGAAATTGCACATTAGGAATGACTTTAGCAATaagcaga
aaaaaattgaacatttttaatgaaaagtaa
Run BLAST on NCBI

transcript from alignment at scaffold_294:111040..111469

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057624 ID=TCONS_00057624|Name=TCONS_00057624|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_294:111040..111469 (Clytia hemisphaerica)
ttacttttcattaaaaatgttcaatttttttctgcttATTGCTAAAGTCA
TTCCTAATGTGCAATTTCAAACTTGACGTTAATTCTTTAGAATAAGGAGG
TACTCAAAACTTCAAGACAAAAAAGCATAGATGAAATGAATTACAACCTA
TAGACATCAATACAtcattttttggcatttttcatcCTCTTTGACATGAT
TTAGTTGTATAATTCATTTCTGGTTCCAGTATTTTCTACTGGCCTTTTCT
ATTGgcaacgtcaatttttttaagctaaaatctttttttgtcttttcgaC
AGGAGGAATCTTTGAGCCAAGCTGGCATAGTGAAAATCCTTTACAACCTA
TCAATAtttatacatcgttggaaagaGCTAGAACTGATCTTTCTTTCTAT
ATATTTGTATAATTAAAAGGCAGATTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036342XLOC_036342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057624-exon-scaffold_294-1491911889:111040..111469TCONS_00057624-exon-scaffold_294-1491911889:111040..111469Clytia hemisphaericaexon
TCONS_00057624-exon-scaffold_294-1510915933:111040..111469TCONS_00057624-exon-scaffold_294-1510915933:111040..111469Clytia hemisphaericaexon
TCONS_00057624-exon-scaffold_294-1575043694:111040..111469TCONS_00057624-exon-scaffold_294-1575043694:111040..111469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:111040..111469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54432	0.753151	2.32398	1.82276	0	0.171071	0.41278	0	1.08222	0	0.554785	0.393622	0	0	0.0911558	0	0	0.24704	0	0	0.155212	0.454242	0.920319	0.919469	0.172357	0.371538	0.220122	0.469841	0.712715	0.544608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top