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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057602 ID=TCONS_00057602|Name=TCONS_00057602|organism=Clytia hemisphaerica|type=transcript|length=718bp
CATTTATGAAGAGTATTATCATCGGCGAAGTTACAGAGGtcatcttcatt
tacaaaataaaataaatcattgataaaaacattgaaaaggaTTGGACCTA
AAATAGATCCTTGAGGCACTCCAAATAGCAAAGGTAGCCAACTACTGTAA
GATGAACCCACTCTGACCCTGTGTTTCCTATTTGAAAGATAGCTATGGAT
AAAAGCGAGGCTTTTATTTCCAAGTCCATACGCATGAAGTTTAGCGATAA
GAAGATCATGAGGCAAGCAGTCAAAGGCTTTAGACAAATCCATCAGAATT
GCTCCAATTTTCTCAGAATTAGAAAGCGACATCTGCCATTTTCGCAACAT
GTTAAGTAAAGCACTCTGTGTGCTATACTGTTTGCGAAAACCACAGAGTT
TAGTAGAGAAGAGGGATTCGAGAAAAATGTTTAATTGTTTCGATattagt
ttttcaaagatttttgctgGGGAAGGGAGCAAACTGACAGGTCTGTAGTT
ATCCTTGTCGTGCTTGCTTTTCTTTTTATGGACTGGGATAATATCAGCCT
GCTTCAAGCTATCAGGAAAATGTTGTGTTTCAAGACTGTGGTTGAAACAC
GATGTCAGTGTAGGAGCACAAACAAATTTGGCTAACTTTATGATCTTAGT
AGGAATATCACCACTGACTGACTTAGAATCGTTCAGGCTATTTATAACCT
TGAGTGTTTCTGAATTTG Run BLAST on NCBI protein sequence of TCONS_00057602-protein >TCONS_00057602-protein ID=TCONS_00057602-protein|Name=TCONS_00057602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
NSETLKVINSLNDSKSVSGDIPTKIIKLAKFVCAPTLTSCFNHSLETQHF
PDSLKQADIIPVHKKKSKHDKDNYRPVSLLPSPAKIFEKLISKQLNIFLE
SLFSTKLCGFRKQYSTQSALLNMLRKWQMSLSNSEKIGAILMDLSKAFDC
LPHDLLIAKLHAYGLGNKSLAFIHSYLSNRKHRVRVGSSYSSWLPLLFGV
PQGSILGPILFNVFINDLFYFVNEDDLCNFADDNTLHK Run BLAST on NCBI transcript from alignment at scaffold_293:246980..247697 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057602 ID=TCONS_00057602|Name=TCONS_00057602|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at scaffold_293:246980..247697 (Clytia hemisphaerica)
CAAATTCAGAAACACTCAAGGTTATAAATAGCCTGAACGATTCTAAGTCA
GTCAGTGGTGATATTCCTACTAAGATCATAAAGTTAGCCAAATTTGTTTG
TGCTCCTACACTGACATCGTGTTTCAACCACAGTCTTGAAACACAACATT
TTCCTGATAGCTTGAAGCAGGCTGATATTATCCCAGTCCATAAAAAGAAA
AGCAAGCACGACAAGGATAACTACAGACCTGTCAGTTTGCTCCCTTCCCc
agcaaaaatctttgaaaaactaatATCGAAACAATTAAACATTTTTCTCG
AATCCCTCTTCTCTACTAAACTCTGTGGTTTTCGCAAACAGTATAGCACA
CAGAGTGCTTTACTTAACATGTTGCGAAAATGGCAGATGTCGCTTTCTAA
TTCTGAGAAAATTGGAGCAATTCTGATGGATTTGTCTAAAGCCTTTGACT
GCTTGCCTCATGATCTTCTTATCGCTAAACTTCATGCGTATGGACTTGGA
AATAAAAGCCTCGCTTTTATCCATAGCTATCTTTCAAATAGGAAACACAG
GGTCAGAGTGGGTTCATCTTACAGTAGTTGGCTACCTTTGCTATTTGGAG
TGCCTCAAGGATCTATTTTAGGTCCAAtccttttcaatgtttttatcaat
gatttattttattttgtaaatgaagatgaCCTCTGTAACTTCGCCGATGA
TAATACTCTTCATAAATG Coding sequence (CDS) from alignment at scaffold_293:246980..247697 >TCONS_00057602 ID=TCONS_00057602|Name=TCONS_00057602|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_293:246980..247697 (Clytia hemisphaerica)
AATTCAGAAACACTCAAGGTTATAAATAGCCTGAACGATTCTAAGTCAGT
CAGTGGTGATATTCCTACTAAGATCATAAAGTTAGCCAAATTTGTTTGTG
CTCCTACACTGACATCGTGTTTCAACCACAGTCTTGAAACACAACATTTT
CCTGATAGCTTGAAGCAGGCTGATATTATCCCAGTCCATAAAAAGAAAAG
CAAGCACGACAAGGATAACTACAGACCTGTCAGTTTGCTCCCTTCCCcag
caaaaatctttgaaaaactaatATCGAAACAATTAAACATTTTTCTCGAA
TCCCTCTTCTCTACTAAACTCTGTGGTTTTCGCAAACAGTATAGCACACA
GAGTGCTTTACTTAACATGTTGCGAAAATGGCAGATGTCGCTTTCTAATT
CTGAGAAAATTGGAGCAATTCTGATGGATTTGTCTAAAGCCTTTGACTGC
TTGCCTCATGATCTTCTTATCGCTAAACTTCATGCGTATGGACTTGGAAA
TAAAAGCCTCGCTTTTATCCATAGCTATCTTTCAAATAGGAAACACAGGG
TCAGAGTGGGTTCATCTTACAGTAGTTGGCTACCTTTGCTATTTGGAGTG
CCTCAAGGATCTATTTTAGGTCCAAtccttttcaatgtttttatcaatga
tttattttattttgtaaatgaagatgaCCTCTGTAACTTCGCCGATGATA
ATACTCTTCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057602-exon-scaffold_293-1491911889:246980..247697 | TCONS_00057602-exon-scaffold_293-1491911889:246980..247697 | Clytia hemisphaerica | exon |
| TCONS_00057602-exon-scaffold_293-1510915933:246980..247697 | TCONS_00057602-exon-scaffold_293-1510915933:246980..247697 | Clytia hemisphaerica | exon |
| TCONS_00057602-exon-scaffold_293-1575043694:246980..247697 | TCONS_00057602-exon-scaffold_293-1575043694:246980..247697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_293 | supercontig | scaffold_293:246980..247697 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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