TCONS_00005708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005708
Unique NameTCONS_00005708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005708 ID=TCONS_00005708|Name=TCONS_00005708|organism=Clytia hemisphaerica|type=transcript|length=286bp
cctagatatgcttataaaaaacatgtaaaggtCTTTTCTATCACTACCCC
TTACCTAGGACTGCGCAAATTAACTCTCAAAGTTGTTGTCCAAAtaaatt
tccagctggaaatacagAGCTGTTCCTATTAAGTATCATAATCGCTCCTG
GCAAATCGGAACAGCtatgttttgcttttttatctccagctggaaataga
gagctgttcccttgaaataaaaagattgcCACTGGCGTTAGAACAGATAC
TTTCCTTTttatctccagctggaaatGGAGAGCTGT
Run BLAST on NCBI

transcript from alignment at sc0000054:732103..732388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005708 ID=TCONS_00005708|Name=TCONS_00005708|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0000054:732103..732388 (Clytia hemisphaerica)
ACAGCTCTCCatttccagctggagataaAAAGGAAAGTATCTGTTCTAAC
GCCAGTGgcaatctttttatttcaagggaacagctctctatttccagctg
gagataaaaaagcaaaacataGCTGTTCCGATTTGCCAGGAGCGATTATG
ATACTTAATAGGAACAGCTctgtatttccagctggaaatttaTTTGGACA
ACAACTTTGAGAGTTAATTTGCGCAGTCCTAGGTAAGGGGTAGTGATAGA
AAAGacctttacatgttttttataagcatatctagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003233XLOC_003233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005708-exon-sc0000054-1491911889:732103..732388TCONS_00005708-exon-sc0000054-1491911889:732103..732388Clytia hemisphaericaexon
TCONS_00005708-exon-sc0000054-1510915933:732103..732388TCONS_00005708-exon-sc0000054-1510915933:732103..732388Clytia hemisphaericaexon
TCONS_00005708-exon-sc0000054-1575043694:732103..732388TCONS_00005708-exon-sc0000054-1575043694:732103..732388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:732103..732388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457979	1.78641	0.518547	0.507318	1.85283	0.976088	0.588804	1.10246	3.08744	1.43411	2.78396	1.83007	4.56881	3.16317	3.38072	1.3954	0.687606	5.63819	1.46053	0.509445	3.0996	0	0.52511	1.9096	0.491712	0.438841	0	0.670197	0	0.517899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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