TCONS_00057546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057546
Unique NameTCONS_00057546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057546 ID=TCONS_00057546|Name=TCONS_00057546|organism=Clytia hemisphaerica|type=transcript|length=317bp
aaaaaacattggaaaatcgttAACACAAAAGATTCTTTTCTATGGCCAAG
GAGGAGACCCGTGGAAGAAGAGCAGCCTTGTACTTGGTGGTGGCAATTCC
GTCCAATCTGGCATATCAAGTCGAGCATTGCAAGAAATATGTGGGAAGGC
TTCCGTGATCATCACAATAAATGATTCAACAATGACACCAAGCCAGGCCG
AAAACCTTCTTCAAATACACGAAGGAAACACACAGGGGTCAAAGAACATG
GGTACAATGCACAGTAAATGTTGCGCAATAACCATCTCATCAAACAATGA
GGAACCTGAACGGTAGG
Run BLAST on NCBI

protein sequence of TCONS_00057546-protein

>TCONS_00057546-protein ID=TCONS_00057546-protein|Name=TCONS_00057546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
KNIGKSLTQKILFYGQGGDPWKKSSLVLGGGNSVQSGISSRALQEICGKA
SVIITINDSTMTPSQAENLLQIHEGNTQGSKNMGTMHSKCCAITISSNNE
EPER
Run BLAST on NCBI

transcript from alignment at scaffold_292:133489..133917-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057546 ID=TCONS_00057546|Name=TCONS_00057546|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_292:133489..133917- (Clytia hemisphaerica)
AAAAAACATTGGAAAATCGTTAACACAAAAGATTCTTTTCTATGGCCAAG
GAGGAGACCCGTGGAAGAAGAGCAGCCTTGTACTTGGTGGTGGCAATTCC
GTCCAATCTGGCATATCAAGGTAAAGATTGTATTCAGAAATATCAATTAT
ACAAGACTTTGAAGTGTTTAAACCTGAAATCCGTACCACCTATTTGCTCT
ACATTAAGATTAAAATTGTCTTATATTCATAGTCGAGCATTGCAAGAAAT
ATGTGGGAAGGCTTCCGTGATCATCACAATAAATGATTCAACAATGACAC
CAAGCCAGGCCGAAAACCTTCTTCAAATACACGAAGGAAACACACAGGGG
TCAAAGAACATGGGTACAATGCACAGTAAATGTTGCGCAATAACCATCTC
ATCAAACAATGAGGAACCTGAACGGTAGG

Coding sequence (CDS) from alignment at scaffold_292:133489..133917-

>TCONS_00057546 ID=TCONS_00057546|Name=TCONS_00057546|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_292:133489..133917- (Clytia hemisphaerica)
TCGAGCATTGCAAGAAATATGTGGGAAGGCTTCCGTGATCATCACAATAA
ATGATTCAACAATGACACCAAGCCAGGCCGAAAACCTTCTTCAAATACAC
GAAGGAAACACACAGGGGTCAAAGAACATGGGTACAATGCACAGTAAATG
TTGCGCAATAACCATCTCATCAAACAATGAGGAACCTGAACGGTAGAAAA
ACATTGGAAAATCGTTAACACAAAAGATTCTTTTCTATGGCCAAGGAGGA
GACCCGTGGAAGAAGAGCAGCCTTGTACTTGGTGGTGGCAATTCCGTCCA
ATCTGGCATATCAAGTCGAGCATTGCAAGAAATATGTGGGAAGGCTTCCG
TGATCATCACAATAAATGATTCAACAATGACACCAAGCCAGGCCGAAAAC
CTTCTTCAAATACACGAAGGAAACACACAGGGGTCAAAGAACATGGGTAC
AATGCACAGTAAATGTTGCGCAATAACCATCTCATCAAACAATGAGGAAC
CTGAACGGTAGAAAAACATTGGAAAATCGTTAACACAAAAGATTCTTTTC
TATGGCCAAGGAGGAGACCCGTGGAAGAAGAGCAGCCTTGTACTTGGTGG
TGGCAATTCCGTCCAATCTGGCATATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036283XLOC_036283Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057546-proteinTCONS_00057546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057546-exon-scaffold_292-1575043694:133798..133917TCONS_00057546-exon-scaffold_292-1575043694:133798..133917Clytia hemisphaericaexon
TCONS_00057546-exon-scaffold_292-1575043694:133489..133685TCONS_00057546-exon-scaffold_292-1575043694:133489..133685Clytia hemisphaericaexon
TCONS_00057546-exon-scaffold_292-1510915933:133798..133917TCONS_00057546-exon-scaffold_292-1510915933:133798..133917Clytia hemisphaericaexon
TCONS_00057546-exon-scaffold_292-1510915933:133489..133685TCONS_00057546-exon-scaffold_292-1510915933:133489..133685Clytia hemisphaericaexon
TCONS_00057546-exon-scaffold_292-1491911889:133798..133917TCONS_00057546-exon-scaffold_292-1491911889:133798..133917Clytia hemisphaericaexon
TCONS_00057546-exon-scaffold_292-1491911889:133489..133685TCONS_00057546-exon-scaffold_292-1491911889:133489..133685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:133489..133917 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0956202	0	0	24.1738	22.9027	20.1436	24.2522	13.7694	18.7162	11.6129	15.0245	8.4489	9.82962	3.1356	2.75852	3.72616	1.29577	0.545657	2.69972	0.724368	1.50547	1.32615	1.64372	7.3948	22.9275	0.426859	0.859721	0	0.37141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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