TCONS_00057494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057494
Unique NameTCONS_00057494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057494 ID=TCONS_00057494|Name=TCONS_00057494|organism=Clytia hemisphaerica|type=transcript|length=537bp
ATATTATCTTCAAGTAATCGCCCAATCAAGAAGTCTATCTAACCGGCGAC
CtaacaccaaaaaaaagtaatataacatatgaaaaattataataatGAAA
AACTGATATACTTGTTGTCATTTTATGAGTAGGCTTCGAAGCAAAGCAGT
TCTTCATCATGAATTTCAGCTTTCTGTGCGGTATCTGTCTGTCTTTTCAT
TTCCGCATATTTCTGACCATATGTTATGGTTTGATGACAATATTTGGTGG
CATTGGGAATGTTGTCTCCATCATCAGTAtttataaaaagaatcaaaatt
caAACGATCGAGATAATATTGATCTGATTTTATTATCACTTGCTGTTTGC
GATGCTTTGGTTTCAATCACTGTATATCCAGTTTATCCGTGGCTAAACTT
TTGGACATTTGATTTTGGATCGTTCCCAATCGCCATGAGGATTTTTGGCT
TGGTCCTGTTAAGCATGACCTCAACTTCATCTTTGACAATCATCATGTTA
GCCGCTATCAAATATCTCAAGATTTCAAGAACAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00057494-protein

>TCONS_00057494-protein ID=TCONS_00057494-protein|Name=TCONS_00057494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MNFSFLCGICLSFHFRIFLTICYGLMTIFGGIGNVVSIISIYKKNQNSND
RDNIDLILLSLAVCDALVSITVYPVYPWLNFWTFDFGSFPIAMRIFGLVL
LSMTSTSSLTIIMLAAIKYLKISRTS
Run BLAST on NCBI

transcript from alignment at scaffold_289:285200..285736

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057494 ID=TCONS_00057494|Name=TCONS_00057494|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_289:285200..285736 (Clytia hemisphaerica)
TGCTTGTTCTTGAAATCTTGAGATATTTGATAGCGGCTAACATGATGATT
GTCAAAGATGAAGTTGAGGTCATGCTTAACAGGACCAAGCCAAAAATCCT
CATGGCGATTGGGAACGATCCAAAATCAAATGTCCAAAAGTTTAGCCACG
GATAAACTGGATATACAGTGATTGAAACCAAAGCATCGCAAACAGCAAGT
GATAATAAAATCAGATCAATATTATCTCGATCGTTtgaattttgattctt
tttataaaTACTGATGATGGAGACAACATTCCCAATGCCACCAAATATTG
TCATCAAACCATAACATATGGTCAGAAATATGCGGAAATGAAAAGACAGA
CAGATACCGCACAGAAAGCTGAAATTCATGATGAAGAACTGCTTTGCTTC
GAAGCCTACTCATAAAATGACAACAAGTATATCAGTTTTTCattattata
atttttcatatgttatattacttttttttggtgttaGGTCGCCGGTTAGA
TAGACTTCTTGATTGGGCGATTACTTGAAGATAATAT

Coding sequence (CDS) from alignment at scaffold_289:285200..285736

>TCONS_00057494 ID=TCONS_00057494|Name=TCONS_00057494|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_289:285200..285736 (Clytia hemisphaerica)
GCTTGTTCTTGAAATCTTGAGATATTTGATAGCGGCTAACATGATGATTG
TCAAAGATGAAGTTGAGGTCATGCTTAACAGGACCAAGCCAAAAATCCTC
ATGGCGATTGGGAACGATCCAAAATCAAATGTCCAAAAGTTTAGCCACGG
ATAAACTGGATATACAGTGATTGAAACCAAAGCATCGCAAACAGCAAGTG
ATAATAAAATCAGATCAATATTATCTCGATCGTTtgaattttgattcttt
ttataaaTACTGATGATGGAGACAACATTCCCAATGCCACCAAATATTGT
CATCAAACCATAACATATGGTCAGAAATATGCGGAAATGAAAAGACAGAC
AGATACCGCACAGAAAGCTGAAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036235XLOC_036235Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057494-proteinTCONS_00057494-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057494-exon-scaffold_289-1491911889:285200..285736TCONS_00057494-exon-scaffold_289-1491911889:285200..285736Clytia hemisphaericaexon
TCONS_00057494-exon-scaffold_289-1510915933:285200..285736TCONS_00057494-exon-scaffold_289-1510915933:285200..285736Clytia hemisphaericaexon
TCONS_00057494-exon-scaffold_289-1575043694:285200..285736TCONS_00057494-exon-scaffold_289-1575043694:285200..285736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:285200..285736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108164	0	0.476267	0	0.29173	0.115264	1.55395	0.48478	2.5634	3.24698	0.163472	1.17331	0.0303499	0.0747066	0	0.137419	0	0	0.344942	0	0	0	0.248037	0	0	0.207288	0.268312	1.03909	0.595177	0.299181
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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