TCONS_00057476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057476
Unique NameTCONS_00057476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057476 ID=TCONS_00057476|Name=TCONS_00057476|organism=Clytia hemisphaerica|type=transcript|length=439bp
gTAGAATCCACCGGGTCCGATTCCCAAACAAGAATTTCCACCAATGCTGT
TCAAGCTGCATGGGAAATTGAAGACAGGTTCTTTAGTTGGTGGTTTCAGA
ACCTGCAGCATTTATCCACTTGATTCGACGCCTTTTTCGGCAATTCAAAA
TGTACCCTAAAGAAACCGATGAAGTGGCGATGTTGACCGCGAGAAAGTGA
TGTTGATCCAGGAGATGCACGAGAGGGCGTACTTAAAATACAAACCAAAA
TGTCCTTCCAAAAAGGACATCATCCCCTACGGACATCATGACAGCGGAGC
CAGCAACGTTGGTGCCGTATCTGACAACGACAATGACGAAAATGGCTGAA
TAGTACTGTTGCATCTGTCGACCTCAAACCGGCAGAGATATCAGGAAACG
GTAAATGTAAAAGATTTGATCATTACTTAAAAAAGTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_289:222060..222706-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057476 ID=TCONS_00057476|Name=TCONS_00057476|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_289:222060..222706- (Clytia hemisphaerica)
GTAGAATCCACCGGGTCCGATTCCCAAACAAGAATTTCCACCAATGCTGT
TCAAGCTGCATGGGAAATTGAAGACAGGTTCTTTAGTTGGTGGTTTCAGA
ACCTGCAGCATTTATCCACTTGATTCGACGCCTTTTTCGGCAATTCAAAA
TGTACCCTGTAAGGATAAATTACTCTGACTTATTCACTAAATTCTTTTTT
GAAATTNTTTTGGCAATTCAAAATAGTCCCTGTAAGGATAAATTACTCTG
ACTTTTTCACTAAATTCTTTTTTGAAATGATCTCGGAATTTTTTTCCCTT
TATTAATTTAGGTGTTAAAATTCAATATATCTAATAAAATCTGTTTTGCT
TTTAACCTAACCATAGAAAGAAACCGATGAAGTGGCGATGTTGACCGCGA
GAAAGTGATGTTGATCCAGGAGATGCACGAGAGGGCGTACTTAAAATACA
AACCAAAATGTCCTTCCAAAAAGGACATCATCCCCTACGGACATCATGAC
AGCGGAGCCAGCAACGTTGGTGCCGTATCTGACAACGACAATGACGAAAA
TGGCTGAATAGTACTGTTGCATCTGTCGACCTCAAACCGGCAGAGATATC
AGGAAACGGTAAATGTAAAAGATTTGATCATTACTTAAAAAAGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036219XLOC_036219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057476-exon-scaffold_289-1575043694:222549..222706TCONS_00057476-exon-scaffold_289-1575043694:222549..222706Clytia hemisphaericaexon
TCONS_00057476-exon-scaffold_289-1575043694:222060..222340TCONS_00057476-exon-scaffold_289-1575043694:222060..222340Clytia hemisphaericaexon
TCONS_00057476-exon-scaffold_289-1510915933:222549..222706TCONS_00057476-exon-scaffold_289-1510915933:222549..222706Clytia hemisphaericaexon
TCONS_00057476-exon-scaffold_289-1510915933:222060..222340TCONS_00057476-exon-scaffold_289-1510915933:222060..222340Clytia hemisphaericaexon
TCONS_00057476-exon-scaffold_289-1491911889:222549..222706TCONS_00057476-exon-scaffold_289-1491911889:222549..222706Clytia hemisphaericaexon
TCONS_00057476-exon-scaffold_289-1491911889:222060..222340TCONS_00057476-exon-scaffold_289-1491911889:222060..222340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:222060..222706 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23401	1.05293	0	0.341737	0.208016	0.493132	0.594942	0.556978	0.779906	0.805033	0	0.10273	0.615525	0.532691	0.262767	1.22195	0.578978	0.474747	0	0	0.149139	0.218234	0.530584	0.64317	4.47154	2.51269	0	0	1.02724	0.523297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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