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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057449 ID=TCONS_00057449|Name=TCONS_00057449|organism=Clytia hemisphaerica|type=transcript|length=1480bp
AGGTACTCTTGACTACTTGACCAGCGCTCGGAGTGGATAGAAGCAAATGA
GAATAAAGAGGCAGTTTTAAACACGAAGATAAGTAGTCGTTTcattttaa
gggttttttaGCCTATGTTATAAACTTGAATCAATCATTGGAAAGATTTT
CAGCCTTGgtatatatttatattttatacttCATTTCCTCAGGGTGGGAA
AAATttagaatataaatttttgttcaGCTAGCCTTACATCATTACCCCCT
TTCCATCCCCTaagcttttctttttcttaccctttcttgaaatctttttt
ggtaGAACCAAATTATGCAGGTGTTTAGTAATTCGCGTGTCCAATTGAGT
CACTGGCGTGCGCCCTGCCGTAAATAGCATAAGTCCCTTTAAAATGACAT
AATCCAGCTGCATGATTCTTGAATCTCCTTTTACCTGGCGTTTGCCGACG
GACCATATCCTATCCTTCAAAAGTCGCCGATGTATAATTTCgtaatttgt
ataattttccaTCATTTAATTTCAATGTCAATTAATTATCTCTTCtagat
tctaaaaaaatttgccgccttcaaaaaataattcacagcTTTTTCTCAAA
ACTATTCCCTAGATAATTATTTCTGAAGAGGTGGGTTTGTATAAATTTGC
AACATTTTTCTTTCAGGCAAGTTCATTCAAAGTAAGTTCAAGGCAAACTC
AAGACAAAAGACTTTCACATCATCAGATGCCACAAAACTATCCTACATCA
CAATTTGTCGACGACCAACAACAACCAGCCAGAATCGTTAAGCGTCGCAT
CGTTTTTGTGGATGACTCAACCATCTCTTCAACGCCGTTCATCTCCCAAT
CTACCGATCCCGCCCTGATCAATACCCGCCCTCAAACACGAGAGATGTCA
ACCCAAACAGAGAACTCGACACAAATAGAAGAGCAACAAACCAAACAACG
CCCTTCAAAACGTAAAATCGACGAAGTGACAAACGCTAAAGGAAGCAAAC
GACTAAAAGATGTTGGTCGAAACGAACGTGAAAGATCTCGCGTCCGAAAC
GAAGGAAACGCGTATAATATATTGCGTTCGCATCTCCCACCTCTTGGACA
TGACAGAAGGAGAAACAAACCTGTTTACGCTAGaactcattttgaaatct
taAAATCGACAATCAAGTATATATCGGACCTTCAAAACCTCTTAGCTGAA
GCAGACGCCAATCCCAGTAGCTAAACTTTTGGAACTTACAAGAAGTTCAG
TTTTTGTATATAATTGTACAGAAAGTCTATGAGGTCTTCCATGATCCATC
ACCATCAGAATTTCATACAGTATTGTCATTGCAATTTAGGCATTATTGAA
TGGCAAAGATGATAATGGTACTTGCATCGTACAtcgtttttcttataaat
ttcTTACAAATTTCGCGATTATTGACTTGATCTATTTTGACTTCTATAAT
TGAAGAGTATGATGAATAGGTGAATTAGCA Run BLAST on NCBI transcript from alignment at scaffold_289:13595..17821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057449 ID=TCONS_00057449|Name=TCONS_00057449|organism=Clytia hemisphaerica|type=transcript|length=4227bp|location=Sequence derived from alignment at scaffold_289:13595..17821+ (Clytia hemisphaerica)
AGGTACTCTTGACTACTTGACCAGCGCTCGGAGTGGATAGAAGCAAATGA
GAATAAAGAGGCAGTTTTAAACACGAAGATAAGTAGTCGTTTcattttaa
gggttttttaGCCTATGTTATAAACTTGAATCAATCATTGGAAAGATTTT
CAGCCTTGgtatatatttatattttatacttCATTTCCTCAGGGTGGGAA
AAATttagaatataaatttttgttcaGCTAGCCTTACATCATTACCCCCT
TTCCATCCCCTaagcttttctttttcttaccctttcttgaaatctttttt
ggtaGAACCAAATTATGCAGGTGTTTAGTAATTCGCGTGTCCAATTGAGT
CACTGGCGTGCGCCCTGCCGTAAATAGCATAAGTCCCTTTAAAATGACAT
AATCCAGCTGCATGATTCTTGAATCTCCTTTTACCTGGCGTTTGCCGACG
GACCATATCCTATCCTTCAAAAGTCGCCGATGTATAATTTCgtaatttgt
ataattttccaTCATTTAATTTCAATGTCAATTAATTATCTCTTCtagat
tctaaaaaaatttgccgccttcaaaaaataattcacagcTTTTTCTCAAA
ACTATTCCCTAGATAATTATTTCTGAAGAGGTGGGTTTGTATAAATTTGC
AACATTTTTCTTTCAGGCAAGTTCATTCAAAGTAAGTTCAAGGCAAACTC
AAGACAAAAGACTTTCACAGTAAGGTATGTATCTTATGCTCTAgactaat
agaccttttcataaattacgtcacgaacatcacttgcctcgttttgaaat
tattgccatggtgattaactccaaGCGGATTTTATTTAAACtactttctt
ttcataaaaaaatcatttaatgtctcaagggacataatcaccatagcgat
tgtttgaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaaggtc
tattccttTATATTAATATTCTTTGGTCATATCTATATTTTTTGTGACCG
CGTCGTTCTCTCGCGGTCCTTTACGGGAGAGGGATTgctcagggtccctt
ttttaggttCTTAAGAAATCTGACAGGgtcaacttttatttatattgcac
gatacacgtttttcggatgttcttaacattttcttatcTATACCATTTTG
TGAGAgaaggcccggcggaagcgagGAGACCAGAgagacttcagcctctc
cacttttgagcaaatgagattttttttgtcaagtttcaagggaatttcat
ctcattttgagccttcagcctccccacttttacggttgttccgctgGACC
TGcagtatttttgaccattttcctaagaaatgttcttaaaatgttcttaa
cttgttcttaacattttagtttgttctcataaaaaatctTATATGCAGGG
TAGAAATTAAAATCTTTCGTCttcttttagtcatttttgccaatttttgc
caatttttgccaattgggagagattttcgatttttcatcccgacagggtc
ccaaattttatcaaacattcatatctgacatggtcaacttttcaaactcc
agcggctcGTCCCCGTCacccgtcaaggtcagtgccttCTCCCCACGGAG
GGTTTGTCTCATATGGAGTGCTGCTTGAATCGACAATTAACATTTTTTCA
GGGGTGTTATGCTGTTACGTCGTAGCAGCTTAATTTTATCAAACATGATC
CCTAGCAATGGGTACTGCCTTAATCGAATCGTAGTCAATTGTATTTTTGT
TTGAGATTTTCCCTGTTGAGTTTCCTCAGCTGGGTATCGACTACAGCTCA
GCCTGatgatatacacgtttttttataagaacaaactatataagaacata
aggcttcggtgaccaaaatcttaagaacaacttatgaacatttttaggct
tgaaacccggaaagttaagaacatctgaatgcttcaaaaattttggatgc
tcttataaaaaaacgtgtaagtcaTTGATCCGggtcatttttattacatt
gCTCAAAGAAAATCAAGGTTGGCTCTTTTTTGGATGTTTGAGAGCAAAAG
GTTGAGATTTAAGTCCCATTTTATGTTATATTGTTCACTACGTATTGTTT
GTTAAAGTCCCTTTTTTGAACCGATCATtcatatacacgcttttttgtaa
taagaatagtgtactttggctgagggtgagcattattcttatttttctat
tgttctaaacaataggtcTATTGTTTTAACTctaaaatctcaccctgata
ttcttatagaagttattcttataaaaaagaaagcgtGTATGACCTTTAAA
GTATTCagtcatttttggacctaccgggaggtcctttaatttgaccgttg
tccgttcgtctgttacaagcttttcttgggattggctcattagttttttt
ttaattttttgcacaatgatacaaaatagcaatgcctgaaaagtgacgga
gcccgatttttgaaaaaaaattttggggggcaaatttgggccaaaaacta
cctaaaaataaggttttttggacttggtgcaagattgcttcattagtttt
tcctgattttatgCATATAGAtcgagggcaaggttctctaaaaagtggct
gtagcagtttttttcggaaaattttttttggctgtaaaatcggattttct
tattcggggaaattcccttatttcattttaagggaaaaagagcatttctT
GCGATtgcattgatatttttttctgaatttttgcactttgatgtaaaatg
gtaatatttaaactCTGAtgaagcctgattttcaaaaaataatttatttg
ggcaaatttgggccNNNNNNNNNNNNNNNNNNNNNNNNNttgggccaaaa
agtgcctaaaaatgggatttttggactttgtgtgaaattgcttcattagt
tttttctgattttttggacaaagatgaAGGGCAAGGTTTTTTAAACTGTG
ACTGAAgtactttttttttggaaaatttaattggccgtaaaaatcggatt
ttcttatttggggaaattcccttttgtcatatttagggaaaatgagcatt
tctcgagattggcttagtatttttttcttattttttgtatagtggtaatt
tgggtagaaaagtgcctaatgtttgttttttttagacatttttgaCTAAT
TTGAGCTCTGATACTCTGATACTCAagctgctcactacactttcttattc
ccttgctatttgtcctatttttttctgattttgatcgacaggtaggtcca
ttcagcatgttgcttgtttatttAGCAGCAATATTGCATgactttttgat
tctttttcttcTAGTTCTCAATAATGTTTCACCAAATGACTTATTCGCCC
TCTTTCCCGCCCGTCTCCTTCAACGCAACGCCCTGCAGACAAGACTTCTA
CTCTCCCGAATCATCATGCCAATTCGGCGTCAACACTCTACAAATGGCCA
ATATTACGCCGCCCAGTCATCAGATGCCACAAAACTATCCTACATCACAA
TTTGTCGACGACCAACAACAACCAGCCAGAATCGTTAAGCGTCGCATCGT
TTTTGTGGATGACTCAACCATCTCTTCAACGCCGTTCATCTCCCAATCTA
CCGATCCCGCCCTGATCAATACCCGCCCTCAAACACGAGAGATGTCAACC
CAAACAGAGAACTCGACACAAATAGAAGAGCAACAAACCAAACAACGCCC
TTCAAAACGTAAAATCGACGAAGTGACAAACGCTAAAGGAAGCAAACGAC
TAAAAGATGTTGGTCGAAACGAACGTGAAAGATCTCGCGTCCGAAACGAA
GGAAACGCGTATAATATATTGCGTTCGCATCTCCCACCTCTTGGACATGA
CAGAAGGAGAAACAAACCTGTTTACGCTAGaactcattttgaaatcttaA
AATCGACAATCAAGTATATATCGGACCTTCAAAACCTCTTAGCTGAAGCA
GACGCCAATCCCAGTAGCTAAACTTTTGGAACTTACAAGAAGTTCAGTTT
TTGTATATAATTGTACAGAAAGTCTATGAGGTCTTCCATGATCCATCACC
ATCAGAATTTCATACAGTATTGTCATTGCAATTTAGGCATTATTGAATGG
CAAAGATGATAATGGTACTTGCATCGTACAtcgtttttcttataaatttc
TTACAAATTTCGCGATTATTGACTTGATCTATTTTGACTTCTATAATTGA
AGAGTATGATGAATAGGTGAATTAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057449-exon-scaffold_289-1491911889:13595..14313 | TCONS_00057449-exon-scaffold_289-1491911889:13595..14313 | Clytia hemisphaerica | exon |
| TCONS_00057449-exon-scaffold_289-1510915933:13595..14313 | TCONS_00057449-exon-scaffold_289-1510915933:13595..14313 | Clytia hemisphaerica | exon |
| TCONS_00057449-exon-scaffold_289-1575043694:13595..14313 | TCONS_00057449-exon-scaffold_289-1575043694:13595..14313 | Clytia hemisphaerica | exon |
| TCONS_00057449-exon-scaffold_289-1491911889:17061..17821 | TCONS_00057449-exon-scaffold_289-1491911889:17061..17821 | Clytia hemisphaerica | exon |
| TCONS_00057449-exon-scaffold_289-1510915933:17061..17821 | TCONS_00057449-exon-scaffold_289-1510915933:17061..17821 | Clytia hemisphaerica | exon |
| TCONS_00057449-exon-scaffold_289-1575043694:17061..17821 | TCONS_00057449-exon-scaffold_289-1575043694:17061..17821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:13595..17821 + |
Blast
The following BLAST results are available for this feature:
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