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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057400 ID=TCONS_00057400|Name=TCONS_00057400|organism=Clytia hemisphaerica|type=transcript|length=2788bpRun BLAST on NCBI protein sequence of TCONS_00057400-protein >TCONS_00057400-protein ID=TCONS_00057400-protein|Name=TCONS_00057400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=705bp MSSSQRRKISKVKKTSGEHHQEESNIVANRYSVTKKLGSGSYGTVFVVSDRun BLAST on NCBI transcript from alignment at scaffold_288:734275..741051- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057400 ID=TCONS_00057400|Name=TCONS_00057400|organism=Clytia hemisphaerica|type=transcript|length=6777bp|location=Sequence derived from alignment at scaffold_288:734275..741051- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:734275..741051- >TCONS_00057400 ID=TCONS_00057400|Name=TCONS_00057400|organism=Clytia hemisphaerica|type=CDS|length=25416bp|location=Sequence derived from alignment at scaffold_288:734275..741051- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057400 vs. Swiss-Prot (Human)
Match: NEK11 (Serine/threonine-protein kinase Nek11 OS=Homo sapiens GN=NEK11 PE=1 SV=2) HSP 1 Score: 358.221 bits (918), Expect = 1.576e-110 Identity = 177/369 (47.97%), Postives = 260/369 (70.46%), Query Frame = 3
Query: 300 IVANRYSVTKKLGSGSYGTVFVVSDLKTSEAE--KVLKKIHIGDLEPNETISAVSEARLLSKLDHPGVVRFHDSFIDREFFCIITEFCEGGDLDVKLHSWKKSGKSVDRTLVLTWFVQLIVAVQYIHQRRILHRDLKTRNIFLKNNIVKIGDFGISRILEGSTDIATTFTGTPYFMAPEILKHEGYNSKSDIWSLGVILYETCTLKKAFQGNNLMAVMKNIVHGDIPKLPSKFNADLHLIYESMLCRDSAKRSSATEILKKPYIMQYLEKLKLKLSGNRTIDRKI-AKREAMEIADALSSGEKCSKSNVKRRGDRLLPGLNNNQRPLTPKELMKIRKQQRADXXXXXXXXXTVKTYAESRRECTDIKNR 1397
++A RY + +KLGSGS+GTV++VSD K E KVLK+I +G+L PNET+ A EA+LLSKLDHP +V+FH SF++++ FCIITE+CEG DLD K+ +K++GK ++ WF+QL++ V Y+H+RRILHRDLK++N+FLKNN++KIGDFG+SR+L GS D+ATT TGTP++M+PE LKH+GY++KSDIWSL ILYE C + AF G+N ++++ IV GD P LP ++ +L+ I ESML ++ + R SA EILK PY+ + L+ L + S D+ + ++EA I +A+ KR + L L+ Q+ +TP+E M++RK Q ADE+ KLKK+ + Y E+ + ++++R
Sbjct: 24 LIARRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNFCIITEYCEGRDLDDKIQEYKQAGKIFPENQIIEWFIQLLLGVDYMHERRILHRDLKSKNVFLKNNLLKIGDFGVSRLLMGSCDLATTLTGTPHYMSPEALKHQGYDTKSDIWSLACILYEMCCMNHAFAGSNFLSIVLKIVEGDTPSLPERYPKELNAIMESMLNKNPSLRPSAIEILKIPYLDEQLQNLMCRYSEMTLEDKNLDCQKEAAHIINAMQ----------KRIHLQTLRALSEVQK-MTPRERMRLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSR 381 The following BLAST results are available for this feature:
BLAST of TCONS_00057400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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