Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057399 ID=TCONS_00057399|Name=TCONS_00057399|organism=Clytia hemisphaerica|type=transcript|length=2513bpRun BLAST on NCBI transcript from alignment at scaffold_288:734275..740857- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057399 ID=TCONS_00057399|Name=TCONS_00057399|organism=Clytia hemisphaerica|type=transcript|length=6583bp|location=Sequence derived from alignment at scaffold_288:734275..740857- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057399 vs. Swiss-Prot (Human)
Match: NEK11 (Serine/threonine-protein kinase Nek11 OS=Homo sapiens GN=NEK11 PE=1 SV=2) HSP 1 Score: 298.13 bits (762), Expect = 5.404e-89 Identity = 160/369 (43.36%), Postives = 236/369 (63.96%), Query Frame = 1 Query: 106 IVANRYSVTKKLGSGSYGTVFVVSDLKTSEAE--KVLKKIHIGDLEPNETISAVSEARLLSK---------------------------GGDLDVKLHSWKKSGKSVDRTLVLTWFVQLIVAVQYIHQRRILHRDLKTRNIFLKNNIVKIGDFGISRILEGSTDIATTFTGTPYFMAPEILKHEGYNSKSDIWSLGVILYETCTLKKAFQGNNLMAVMKNIVHGDIPKLPSKFNADLHLIYESMLCRDSAKRSSATEILKKPYIMQYLEKLKLKLSGNRTIDRKI-AKREAMEIADALSSGEKCSKSNVKRRGDRLLPGLNNNQRPLTPKELMKIRKQQRADXXXXXXXXXTVKTYAESRRECTDIKNR 1122 ++A RY + +KLGSGS+GTV++VSD K E KVLK+I +G+L PNET+ A EA+LLSK G DLD K+ +K++GK ++ WF+QL++ V Y+H+RRILHRDLK++N+FLKNN++KIGDFG+SR+L GS D+ATT TGTP++M+PE LKH+GY++KSDIWSL ILYE C + AF G+N ++++ IV GD P LP ++ +L+ I ESML ++ + R SA EILK PY+ + L+ L + S D+ + ++EA I +A+ KR + L L+ Q+ +TP+E M++RK Q ADE+ KLKK+ + Y E+ + ++++R Sbjct: 24 LIARRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNFCIITEYCEGRDLDDKIQEYKQAGKIFPENQIIEWFIQLLLGVDYMHERRILHRDLKSKNVFLKNNLLKIGDFGVSRLLMGSCDLATTLTGTPHYMSPEALKHQGYDTKSDIWSLACILYEMCCMNHAFAGSNFLSIVLKIVEGDTPSLPERYPKELNAIMESMLNKNPSLRPSAIEILKIPYLDEQLQNLMCRYSEMTLEDKNLDCQKEAAHIINAMQ----------KRIHLQTLRALSEVQK-MTPRERMRLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSR 381 The following BLAST results are available for this feature:
BLAST of TCONS_00057399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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