TCONS_00057442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057442
Unique NameTCONS_00057442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057442 ID=TCONS_00057442|Name=TCONS_00057442|organism=Clytia hemisphaerica|type=transcript|length=280bp
CAATGGAATCTCACTTTCAGAAGTTGAATCTAaaatgaaatggttttttt
tagctttttcctCGTAATTCATTCTGAGGGCCTACTGTagcagtttttta
ttttaacattttaagtTACACTATTTGCTGGTGTACTGTAAacaactttt
cttcttttgttaaattattttattaacaTTAAAAGCCCTTATTATTAGta
tttcaaattctgatggaaTGGTTGAGATTTTTGGCATGTAGATGAACCTC
TCGTAGCCTTGAGCTTGACCTCATTTGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_288:677741..678020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057442 ID=TCONS_00057442|Name=TCONS_00057442|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_288:677741..678020 (Clytia hemisphaerica)
GACCAAATGAGGTCAAGCTCAAGGCTACGAGAGGTTCATCTACATGCCAA
AAATCTCAACCAttccatcagaatttgaaataCTAATAATAAGGGCTTTT
AAtgttaataaaataatttaacaaaagaagaaaagttgtTTACAGTACAC
CAGCAAATAGTGTAacttaaaatgttaaaataaaaaactgctACAGTAGG
CCCTCAGAATGAATTACGaggaaaaagctaaaaaaaaccatttcatttTA
GATTCAACTTCTGAAAGTGAGATTCCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036200XLOC_036200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057442-exon-scaffold_288-1491911889:677741..678020TCONS_00057442-exon-scaffold_288-1491911889:677741..678020Clytia hemisphaericaexon
TCONS_00057442-exon-scaffold_288-1510915933:677741..678020TCONS_00057442-exon-scaffold_288-1510915933:677741..678020Clytia hemisphaericaexon
TCONS_00057442-exon-scaffold_288-1575043694:677741..678020TCONS_00057442-exon-scaffold_288-1575043694:677741..678020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:677741..678020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.54236	1.19006	0	1.54806	0	0.987743	0.32879	0	0	0.60251	0.371122	0	0	1.09985	0.95597	1.39887	1.7005	0.515335	0	0.473711	1.35576	1.4469	9.32811	12.8582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top