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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057264 ID=TCONS_00057264|Name=TCONS_00057264|organism=Clytia hemisphaerica|type=transcript|length=1854bp
aaaaaaagtagaGAGCatgtatttttttcgaaataagaAAAAGGAAtaca
aagatttcaaaattttaaagtggcAATGGTAAACGGACGAGTTGTTCAAA
CCGATCAGCTACTTATATCATCATCTGAAATTGAGTATTGTATTATGAAA
CTGACAATAAAGGGATCAGATTCGGGTGTTGCTTTTGGATGGTTCAGGAT
TGTAGTTGGGTTGTGTAGGCTTGACGGCTTGACTTACTGAATTCCGCCAC
TTTTCACACCAGTGATCATCTCTCCTCTTTAGATATTTGAGTAACATTAT
CAATCTTTAGATTACATCTGGATTACAGGGATTGCATTTGGATTACACCA
TGAACATATCTATCAACAACAATACGATCGACAATCTCAACAGAATCGGG
ATGGCAATACTTGATCGCAACATTCTTACAACTGTTTATGTTTTGAATGT
CATTTTAGGAGTACCTGCGAATTCATTGTTATTGTACAGTCTTTTAATCA
AGAAACGTGAATCAAGGCGTGAGAATATCAACGGATACCAATTCTACGCT
TTTATGGCTATAGTGGATTTAATCAATTCTTCTCTAGTGCCTTCCTTTCA
CATAACAGGAGTACATTTCAAAACAATAACTTATGATGATTATTATGAAA
ACCTATGCCGTGTCATTTTATCATGTAATTATTCACTTTCAATGTTGAGT
TTATGGGCGCTTTCTCTATTGAGTATCGACCGCTGTTTGGCTCTTGTTTA
TCCTTTCAAATACCACGACAATGACTATACCAAAACGAAATTTGCAGTGA
TTGCAATAGTTGTCTGTCATACTATGATAGTGATAATACCAGCATCGACA
GAAAATTATTTCCAGTATGAAGGGCAACCTGGTTTGATGTGTGGTATGGT
TTTCAAGCGGTTGAACTCTGTATATGGTGTATATGTTGGAACAACACAGC
TGGCGTTACCATCTTGTATTATTGGTGTATCCAACTGCATTGTTTTCAGA
ATTGCTATCAAAAAGTTACAAGAAACTCGATTATTCAAGCAAAGAATCGG
TCGTTTGTCTGTTAAACGTGGAAAAATAATCGAGCAAGACGCAGAATCTA
GTAAAGAAAAACCTTCAACTCAGTGCTGGGACAAACAGTGGCCTGACAGT
CAAAATCCATCTATATTGTCTATTAAGGCAAGTATTGAAGAAATCAAGCC
TGCAATCCTACCAATCCATAATTTTAGCCTGGatgcaaaaaatataaatg
aaaaatcACAAGAACAAGTCCCGAATGAtcgaaagaaattgaaaattata
atctcaacattgttcttatttttaaacGCTTTAGTATGTTGGCTGCCATA
TTTGCTTCCACGCTTCTTGGCTTTCCTACATATCAAGCAATTCTCATCGA
GAACATTTGTATATACTGTGATAGGAACGACTTACATATCTACATTGAAC
CCTTACATTATATTTTACACACGAAAGGATTTGAGACTATTTAAAAGCGA
ATCGTTTGTGACAAATTTCAATCGGCAGAGATCTATTAAACATAAAACAA
CAGATGCAAAGAATTGCTAAAGACAAACCAAGAAGTTTCTGAAAAGTTTG
CTCGTAAcaattatttacttttttgtaaagtttactttttttattgacgT
GCATCAAAAGTGGGTCCAAATGTATGGGTGAACCAGCGAGATGGGATAGA
ATAAAAAACCAGTTTCTCTGATTACCTAAAGTGTTTTGATCGCTTCTATT
GAAAACGCTTTTGTTTTGACTTTGATGAGGTCGTTAGAAAAAATACTGGG
AAAGACGAGTGTTCGCTGGTTTCTAGCTGGTTTCTATTTGATATGACCAT
AAAg Run BLAST on NCBI protein sequence of TCONS_00057264-protein >TCONS_00057264-protein ID=TCONS_00057264-protein|Name=TCONS_00057264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MNISINNNTIDNLNRIGMAILDRNILTTVYVLNVILGVPANSLLLYSLLI
KKRESRRENINGYQFYAFMAIVDLINSSLVPSFHITGVHFKTITYDDYYE
NLCRVILSCNYSLSMLSLWALSLLSIDRCLALVYPFKYHDNDYTKTKFAV
IAIVVCHTMIVIIPASTENYFQYEGQPGLMCGMVFKRLNSVYGVYVGTTQ
LALPSCIIGVSNCIVFRIAIKKLQETRLFKQRIGRLSVKRGKIIEQDAES
SKEKPSTQCWDKQWPDSQNPSILSIKASIEEIKPAILPIHNFSLDAKNIN
EKSQEQVPNDRKKLKIIISTLFLFLNALVCWLPYLLPRFLAFLHIKQFSS
RTFVYTVIGTTYISTLNPYIIFYTRKDLRLFKSESFVTNFNRQRSIKHKT
TDAKNC Run BLAST on NCBI transcript from alignment at scaffold_286:884361..887216- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057264 ID=TCONS_00057264|Name=TCONS_00057264|organism=Clytia hemisphaerica|type=transcript|length=2856bp|location=Sequence derived from alignment at scaffold_286:884361..887216- (Clytia hemisphaerica)
AAAAAAAGTAGAGAGCATGTATTTTTTTCGAAATAAGAAAAAGGAATACA
AAGATTTCAAAATTTTAAAGTGGCAATGGTAAACGGACGAGTTGTTCAAA
CCGATCAGCTACTTATATCATCATCTGAAATTGAGTATTGTATTATGAAA
CTGACAATAAAGGGATCAGATTCGGGTGTTGCTTTTGGATGGTTCAGGAT
TGTAGTTGGGTTGTGTAGGCTTGACGGCTTGACTTACTGAATTCCGCCAC
TTTTCACACCAGTGATCATCTCTCCTCTTTAGATATTTGAGTAACATTAT
CAATCTTTAGATTACATCTGGATTACAGGGATTGCATTTGGATTACACCA
TGAACATATCTATCAACAACAATACGATCGACAATCTCAACAGAATCGGG
ATGGCAATACTTGATCGCAACATTCTTACAACTGTTTATGTTTTGAATGT
CATTTTAGGAGTACCTGCGAATTCATTGTTATTGTACAGTCTTTTAATCA
AGAAACGTGAATCAAGGCGTGAGAATATCAACGGATACCAATTCTACGCT
TTTATGGCTATAGTGGATTTAATCAATTCTTCTCTAGTGCCTTCCTTTCA
CATAACAGGAGTACATTTCAAAACAATAACTTATGATGATTATTATGAAA
ACCTATGCCGTGTCATTTTATCATGTAATTATTCACTTTCAATGTTGAGT
TTATGGGCGCTTTCTCTATTGAGTATCGACCGCTGTTTGGCTCTTGTTTA
TCCTTTCAAATACCACGACAATGACTATACCAAAACGAAATTTGCAGTGA
TTGCAATAGTTGTCTGTCATACTATGATAGTGATAATACCAGCATCGACA
GAAAATTATTTCCAGTATGAAGGGCAACCTGGTTTGATGTGTGGTATGGT
TTTCAAGCGGTTGAACTCTGTATATGGTGTATATGTTGGAACAACACAGC
TGGCGTTACCATCTTGTATTATTGGTGTATCCAACTGCATTGTTTTCAGG
TATGAGGTCATCTTATTATTTCTTCAAATGAAATGTAAAAAAAAACAGAG
TAGGAACAAAAGGATAAGGGCATGTTGTCCCATTTTAATCACGCCGTTGT
ATACTTTCTTATACTATGGTCACGCTTAGGATCCGAACTGTAAAACTAGG
CCGACACTGATGGGAAGAGTGACATGAAAAGAAATTTCCTAAAGAAACTT
GCACGAGTCCATGTCATTGGTAGGTCATTCGGGCTTTTGATTTATCCCAT
GTTCTGTAAAATTCATGTCACCATTTTATTAATTTTCCACTTTCGTGAAC
TCTCGTGAACTTTCCCTATTGGAAGGATTATTGGAATAAGTTAAAGGTTT
TTTTACACAAGTATTTCCGTTTCATATCAGACACATATTTCATATCAGGA
CAGTGTCTGCCTTTTGTTATATTATACTGATTAGTTCGCCCCCCCCTTTC
TTAAGGGGGGATGACACCTCCCAAAAAAGTGAAGAAGGTGGGAGACCAGA
AATTTTCATTAAAAAGGGGGGGATAGCAAGGAGGGGGGATCGTTTAAGAA
GAGGGGGCTTACATATATTGTATATATTGTAGATTATTTTCCAGCACTGT
TATGAAGTTTGGTCTGCATGAAAGGAAGTTCTTTATTTTCACTAAAAAGC
GGTATTATATTTGCCAGGCTTGCCACAATTTTTCTTTACTGTTTCCCTTC
CCTTTTTACCATAAAAAATTTAGCCCAAAACACTTGGGGGATAGGCATTT
TTGAAGGTTGGGGGGGATGCCAAGAAGGGGGGAATCATTTAAGAAGGGGG
GATCAGAACCCTCGTTCGTACTATGGATATAAGCAAAAAGATGTTTTTCT
TTTCCTTTTTCTGACCAATCTTTCTCCACATCCCCGTGTCAATCCAATGT
GAAAAAGCTTGTGAATTGAAATTGATAAGTAAGCAAACGATATCACTCTT
ATTTAAAAACAAAACCTTTTACTTACTATCTTTTTTTTTTACCTTTGACA
GAATTGCTATCAAAAAGTTACAAGAAACTCGATTATTCAAGCAAAGAATC
GGTCGTTTGTCTGTTAAACGTGGAAAAATAATCGAGCAAGACGCAGAATC
TAGTAAAGAAAAACCTTCAACTCAGTGCTGGGACAAACAGTGGCCTGACA
GTCAAAATCCATCTATATTGTCTATTAAGGCAAGTATTGAAGAAATCAAG
CCTGCAATCCTACCAATCCATAATTTTAGCCTGGATGCAAAAAATATAAA
TGAAAAATCACAAGAACAAGTCCCGAATGATCGAAAGAAATTGAAAATTA
TAATCTCAACATTGTTCTTATTTTTAAACGCTTTAGTATGTTGGCTGCCA
TATTTGCTTCCACGCTTCTTGGCTTTCCTACATATCAAGCAATTCTCATC
GAGAACATTTGTATATACTGTGATAGGAACGACTTACATATCTACATTGA
ACCCTTACATTATATTTTACACACGAAAGGATTTGAGACTATTTAAAAGC
GAATCGTTTGTGACAAATTTCAATCGGCAGAGATCTATTAAACATAAAAC
AACAGATGCAAAGAATTGCTAAAGACAAACCAAGAAGTTTCTGAAAAGTT
TGCTCGTAACAATTATTTACTTTTTTGTAAAGTTTACTTTTTTTATTGAC
GTGCATCAAAAGTGGGTCCAAATGTATGGGTGAACCAGCGAGATGGGATA
GAATAAAAAACCAGTTTCTCTGATTACCTAAAGTGTTTTGATCGCTTCTA
TTGAAAACGCTTTTGTTTTGACTTTGATGAGGTCGTTAGAAAAAATACTG
GGAAAGACGAGTGTTCGCTGGTTTCTAGCTGGTTTCTATTTGATATGACC
ATAAAG Coding sequence (CDS) from alignment at scaffold_286:884361..887216- >TCONS_00057264 ID=TCONS_00057264|Name=TCONS_00057264|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_286:884361..887216- (Clytia hemisphaerica)
AATTGCTATCAAAAAGTTACAAGAAACTCGATTATTCAAGCAAAGAATCG
GTCGTTTGTCTGTTAAACGTGGAAAAATAATCGAGCAAGACGCAGAATCT
AGTAAAGAAAAACCTTCAACTCAGTGCTGGGACAAACAGTGGCCTGACAG
TCAAAATCCATCTATATTGTCTATTAAGGCAAGTATTGAAGAAATCAAGC
CTGCAATCCTACCAATCCATAATTTTAGCCTGGATGCAAAAAATATAAAT
GAAAAATCACAAGAACAAGTCCCGAATGATCGAAAGAAATTGAAAATTAT
AATCTCAACATTGTTCTTATTTTTAAACGCTTTAGTATGTTGGCTGCCAT
ATTTGCTTCCACGCTTCTTGGCTTTCCTACATATCAAGCAATTCTCATCG
AGAACATTTGTATATACTGTGATAGGAACGACTTACATATCTACATTGAA
CCCTTACATTATATTTTACACACGAAAGGATTTGAGACTATTTAAAAGCG
AATCGTTTGTGACAAATTTCAATCGGCAGAGATCTATTAAACATAAAACA
ACAGATGCAAAGAATTGCTAAATGAACATATCTATCAACAACAATACGAT
CGACAATCTCAACAGAATCGGGATGGCAATACTTGATCGCAACATTCTTA
CAACTGTTTATGTTTTGAATGTCATTTTAGGAGTACCTGCGAATTCATTG
TTATTGTACAGTCTTTTAATCAAGAAACGTGAATCAAGGCGTGAGAATAT
CAACGGATACCAATTCTACGCTTTTATGGCTATAGTGGATTTAATCAATT
CTTCTCTAGTGCCTTCCTTTCACATAACAGGAGTACATTTCAAAACAATA
ACTTATGATGATTATTATGAAAACCTATGCCGTGTCATTTTATCATGTAA
TTATTCACTTTCAATGTTGAGTTTATGGGCGCTTTCTCTATTGAGTATCG
ACCGCTGTTTGGCTCTTGTTTATCCTTTCAAATACCACGACAATGACTAT
ACCAAAACGAAATTTGCAGTGATTGCAATAGTTGTCTGTCATACTATGAT
AGTGATAATACCAGCATCGACAGAAAATTATTTCCAGTATGAAGGGCAAC
CTGGTTTGATGTGTGGTATGGTTTTCAAGCGGTTGAACTCTGTATATGGT
GTATATGTTGGAACAACACAGCTGGCGTTACCATCTTGTATTATTGGTGT
ATCCAACTGCATTGTTTTCAGAATTGCTATCAAAAAGTTACAAGAAACTC
GATTATTCAAGCAAAGAATCGGTCGTTTGTCTGTTAAACGTGGAAAAATA
ATCGAGCAAGACGCAGAATCTAGTAAAGAAAAACCTTCAACTCAGTGCTG
GGACAAACAGTGGCCTGACAGTCAAAATCCATCTATATTGTCTATTAAGG
CAAGTATTGAAGAAATCAAGCCTGCAATCCTACCAATCCATAATTTTAGC
CTGGATGCAAAAAATATAAATGAAAAATCACAAGAACAAGTCCCGAATGA
TCGAAAGAAATTGAAAATTATAATCTCAACATTGTTCTTATTTTTAAACG
CTTTAGTATGTTGGCTGCCATATTTGCTTCCACGCTTCTTGGCTTTCCTA
CATATCAAGCAATTCTCATCGAGAACATTTGTATATACTGTGATAGGAAC
GACTTACATATCTACATTGAACCCTTACATTATATTTTACACACGAAAGG
ATTTGAGACTATTTAAAAGCGAATCGTTTGTGACAAATTTCAATCGGCAG
AGATCTATTAAACATAAAACAACAGATGCAAAGAATTGCTAAATGAACAT
ATCTATCAACAACAATACGATCGACAATCTCAACAGAATCGGGATGGCAA
TACTTGATCGCAACATTCTTACAACTGTTTATGTTTTGAATGTCATTTTA
GGAGTACCTGCGAATTCATTGTTATTGTACAGTCTTTTAATCAAGAAACG
TGAATCAAGGCGTGAGAATATCAACGGATACCAATTCTACGCTTTTATGG
CTATAGTGGATTTAATCAATTCTTCTCTAGTGCCTTCCTTTCACATAACA
GGAGTACATTTCAAAACAATAACTTATGATGATTATTATGAAAACCTATG
CCGTGTCATTTTATCATGTAATTATTCACTTTCAATGTTGAGTTTATGGG
CGCTTTCTCTATTGAGTATCGACCGCTGTTTGGCTCTTGTTTATCCTTTC
AAATACCACGACAATGACTATACCAAAACGAAATTTGCAGTGATTGCAAT
AGTTGTCTGTCATACTATGATAGTGATAATACCAGCATCGACAGAAAATT
ATTTCCAGTATGAAGGGCAACCTGGTTTGATGTGTGGTATGGTTTTCAAG
CGGTTGAACTCTGTATATGGTGTATATGTTGGAACAACACAGCTGGCGTT
ACCATCTTGTATTATTGGTGTATCCAACTGCATTGTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057264-exon-scaffold_286-1575043694:886218..887216 | TCONS_00057264-exon-scaffold_286-1575043694:886218..887216 | Clytia hemisphaerica | exon |
| TCONS_00057264-exon-scaffold_286-1575043694:884361..885215 | TCONS_00057264-exon-scaffold_286-1575043694:884361..885215 | Clytia hemisphaerica | exon |
| TCONS_00057264-exon-scaffold_286-1510915933:886218..887216 | TCONS_00057264-exon-scaffold_286-1510915933:886218..887216 | Clytia hemisphaerica | exon |
| TCONS_00057264-exon-scaffold_286-1510915933:884361..885215 | TCONS_00057264-exon-scaffold_286-1510915933:884361..885215 | Clytia hemisphaerica | exon |
| TCONS_00057264-exon-scaffold_286-1491911889:886218..887216 | TCONS_00057264-exon-scaffold_286-1491911889:886218..887216 | Clytia hemisphaerica | exon |
| TCONS_00057264-exon-scaffold_286-1491911889:884361..885215 | TCONS_00057264-exon-scaffold_286-1491911889:884361..885215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:884361..887216 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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