TCONS_00057138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057138
Unique NameTCONS_00057138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057138 ID=TCONS_00057138|Name=TCONS_00057138|organism=Clytia hemisphaerica|type=transcript|length=482bp
ccgaccgaccgaccaaaAGTTCTGAGGACAAAACAGGTTTTAGTTCGTTT
TTTAGTTCGAATGATTGtgcttttgtgcttaattgccTCTTCCGGTCACA
TTGCAACTTTACCGAAAAAATCATCACAATAGCATTTTATAATTCTATAA
TGCCCAGGCCCCAATGGACATGATCTGTCCTAATCAAAGTGCCCGCACGG
AAAATCTACTTGTATTGTGGATTAATGATTCATGACTCCACCTTTTTTCT
TGTTTGGACATTGGAGCACCGTTTCTACCAAAAGTATAAATGTCGCGTAG
AGTAGATCAGATGATTCatcgaaatttttatcgaaTATTTTAGCGCATAA
AATTTTTTATCGATTATTTTATCGcgtcgaattttttatcgaataattta
tcaCATCgaactttttatcaaattttttatcacataatcgaattttttat
cgaatgatttattgCATTGAATTTTTTATCCA
Run BLAST on NCBI

transcript from alignment at scaffold_285:212466..212947

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057138 ID=TCONS_00057138|Name=TCONS_00057138|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_285:212466..212947 (Clytia hemisphaerica)
TGGATAAAAAATTCAATGcaataaatcattcgataaaaaattcgattatg
tgataaaaaatttgataaaaagttcGATGtgataaattattcgataaaaa
attcgacgCGATAAAATAATCGATAAAAAATTTTATGCGCTAAAATAttc
gataaaaatttcgatGAATCATCTGATCTACTCTACGCGACATTTATACT
TTTGGTAGAAACGGTGCTCCAATGTCCAAACAAGAAAAAAGGTGGAGTCA
TGAATCATTAATCCACAATACAAGTAGATTTTCCGTGCGGGCACTTTGAT
TAGGACAGATCATGTCCATTGGGGCCTGGGCATTATAGAATTATAAAATG
CTATTGTGATGATTTTTTCGGTAAAGTTGCAATGTGACCGGAAGAggcaa
ttaagcacaaaagcaCAATCATTCGAACTAAAAAACGAACTAAAACCTGT
TTTGTCCTCAGAACTtttggtcggtcggtcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035997XLOC_035997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057138-exon-scaffold_285-1491911889:212466..212947TCONS_00057138-exon-scaffold_285-1491911889:212466..212947Clytia hemisphaericaexon
TCONS_00057138-exon-scaffold_285-1510915933:212466..212947TCONS_00057138-exon-scaffold_285-1510915933:212466..212947Clytia hemisphaericaexon
TCONS_00057138-exon-scaffold_285-1575043694:212466..212947TCONS_00057138-exon-scaffold_285-1575043694:212466..212947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:212466..212947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129955	0.253453	0	0.143955	0.175252	0	0	0	0.328532	0	0	0	2.33358	2.06442	0.147586	0.316764	0	0	3.59177	3.61397	0.502592	0.55158	0.596016	0.406399	1.25574	0.249049	0.178194	0	0.28848	0.146958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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