TCONS_00057041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057041
Unique NameTCONS_00057041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057041 ID=TCONS_00057041|Name=TCONS_00057041|organism=Clytia hemisphaerica|type=transcript|length=519bp
gtttttcacagtagaatctgacagggtaggtttttcatcgaatttttctt
ctgacagggtctaattttcatcaaatttaatttctgacaggatcgacttt
tgaaactccagcggcacgtccccgtcggtcgtcaaggtcagtgcccccgg
GTCTTTTTTGTCTGAGAGCTTCTTTGCAAGTGTCGTGATGatcatcttcg
tttttcttcCTTGTCCTCCGTACGGAGATGTAACAAATGGACTGAACGAA
CCTGAACTGAACATGCTCGGCTGAGGTTCGATGGAGACGTCAGTGTGAAC
TTGTGAAAGGAGGTTGGCTAAGACGTTTCTCATCTCGTCATGGCGTTGGT
GGATGAAACCTCTTTTCGGACACACGAAATGGCATAATCGATATCAAATA
GAAAGCCAAATAATCAATTATGATCCGAAGTTATTTCTGTGTCCATCTGT
ACCTCAAGCAAAGAGAATCAACAAATTCCCTTTTATCTGTTTACTCAGAC
AGAAACCTTCACTTTCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_284:1429733..1430251

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057041 ID=TCONS_00057041|Name=TCONS_00057041|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at scaffold_284:1429733..1430251 (Clytia hemisphaerica)
GTTGAAAGTGAAGGTTTCTGTCTGAGTAAACAGATAAAAGGGAATTTGTT
GATTCTCTTTGCTTGAGGTACAGATGGACACAGAAATAACTTCGGATCAT
AATTGATTATTTGGCTTTCTATTTGATATCGATTATGCCATTTCGTGTGT
CCGAAAAGAGGTTTCATCCACCAACGCCATGACGAGATGAGAAACGTCTT
AGCCAACCTCCTTTCACAAGTTCACACTGACGTCTCCATCGAACCTCAGC
CGAGCATGTTCAGTTCAGGTTCGTTCAGTCCATTTGTTACATCTCCGTAC
GGAGGACAAGgaagaaaaacgaagatgatCATCACGACACTTGCAAAGAA
GCTCTCAGACAAAAAAGACccgggggcactgaccttgacgaccgacgggg
acgtgccgctggagtttcaaaagtcgatcctgtcagaaattaaatttgat
gaaaattagaccctgtcagaagaaaaattcgatgaaaaacctaccctgtc
agattctactgtgaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035936XLOC_035936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057041-exon-scaffold_284-1491911889:1429733..1430251TCONS_00057041-exon-scaffold_284-1491911889:1429733..1430251Clytia hemisphaericaexon
TCONS_00057041-exon-scaffold_284-1510915933:1429733..1430251TCONS_00057041-exon-scaffold_284-1510915933:1429733..1430251Clytia hemisphaericaexon
TCONS_00057041-exon-scaffold_284-1575043694:1429733..1430251TCONS_00057041-exon-scaffold_284-1575043694:1429733..1430251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1429733..1430251 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.772435	0.86249	0.510863	0.813265	0.848716	1.26235	2.3186	2.53085	3.09022	0	1.69829	1.37506	1.55378	2.52957	2.64594	3.25263	2.12321	4.48505	4.4201	3.4639	2.45746	1.57365	2.22745	1.09888	0.132862	0.120944	2.45867	2.06852	0.452963	1.46072
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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