TCONS_00056942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056942
Unique NameTCONS_00056942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056942 ID=TCONS_00056942|Name=TCONS_00056942|organism=Clytia hemisphaerica|type=transcript|length=1982bp
TTCATATATACAATACTTGGAGGCCACGGTATCATTTTCTTATTGTTTTA
GTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAAACCATGGCTGCT
CCTATACAACAAATTTCAAATGGCGCTATACCAATTATGTCTGGTGTTGC
AGGAACTCCAGTTCAACAGCCAGCTGTTGTttaccaacaacaacaaccaa
tgATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCACGAAAGCCCTAC
ATCAGGAATCCGAATGAGGAACATTGCAAAATCTTTGTCGGAGGTGTTGG
TAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTGGAAAATTCGGAG
AAATTGCAGATAGTGTTATAATGAAAGATAAACATACAAATGAGCCAAGA
GGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGCTGTCAT
TGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAATGGTTGATC
CTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCAAAATAAACCCTTGtat
gACCCAGATAAGGCCAACACAACTCTTACTACTGCCAATGGTGCTGCACA
ACTTAACTTTCAATACAAAGGTCCAATGAAGTGCTCACCAGAAATGAAAG
TTTTTGTTGGTGGAATTGGTATTGGTACAACAGAGGATGatgtaaagaaa
tattttgaacaatttgGAAAGGTCCTTGCTGTCGATATGCCTGTTCATCA
TGTGTATAAATGTCCCAAAGGCTTTGCATTTGTTGGATTTGAGACATTTG
ATGTAGTTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGAAAA
ACGGTCGAAGTAAAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAA
GAAGGCTGAAGGTATGACTATCCGGTATGCTTCTGCTGGAAGAGGTAGAG
GAATTGGATCAGGAAATATTGGAACAGTGACAGGATACGGTGCATATGCA
AACCTTGGTCAACCATTAATCGTAAACCCTGCTCAACATAGTGTACAATA
TACAGtTCCTGCTGCAGCAACTGGTGGATATGTGTATGATCCCGCATCTA
ATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTGGTGCAGTTGCA
GGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCCCATACGC
TGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCACAAGTTG
GTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGACTAGCAGCAGGC
TCAACAGTTGCCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTTGG
GCCAACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGCAG
GAAACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTATT
TCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGG
AAGATAAGATATTGAacttcaaaactgaaaaaagagaCTTCAATCGTACT
TTGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTCAT
GGACAGcgattttgtaaataaaaacttttttaatctattgattgattgat
gctTTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGGTG
ACAATTCGGTTTTataaatgaaaagacattttattGGATTTGTCTACGCC
ATGCACAATGGATGTAGATATTTTACGCGATAATTTCATTTGAATGAACA
ATTTTTAACGTGAGAACTTTATGGACATGCGCGatatttctctcttttta
tttgaaagaaaatttattcaatggaattacaaaatattttgattgtttat
ccatttcttatttttttatcgGAATTTTCTTTACTTACTATTGAGTCCAC
TTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888711-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056942 ID=TCONS_00056942|Name=TCONS_00056942|organism=Clytia hemisphaerica|type=transcript|length=8867bp|location=Sequence derived from alignment at scaffold_284:879845..888711- (Clytia hemisphaerica)
TTCATATATACAATACTTGGAGGCCACGGTATCATTTTCTTATTGTTTTA
GTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAAACCATGGCTGCT
CCTATACAACAAATTTCAAATGGCGCTATACCAATTATGTCTGGTGTTGC
AGGAACTCCAGTTCAACAGCCAGCTGTTGTTTACCAACAACAACAACCAA
TGATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCACGAAAGCCCTAC
ATCAGGAATCCGAATGAGGAGCATTGGTAANTTACGCACCACGAAAGCCC
TACATCAGGAATCCGAATGAGGAACATTGGTAAGGGAGCTTTTGAAAAAT
TGACTTTTTAATTTATCCATTATACAGTTATACTTGAAAAAAAGAGCTCT
GGGAAAATAACCATTGTGTCTTCAAAAGACCAACTGTATTAGTTCCATAG
GGAAAAATTCATGGTTGTTGGACTTGCAAATACGTGTGTCAGTGTACCAA
TCAAAGGAAATTCGTTTTTACCAATGTTACTTTTTTCTATATCTAAAGAA
TTAGTAAACGTTTTAAAATCTGTAAAAAGCTCTCTACTCCCAAATAGTTC
TAGATTACCAGACAATCTCAATCAAACAGAATCGACGATCGAACCAGTCG
AATGCAATCGAATCTCAATCGAGCGTCAAAATTCTGGGTAATATTCGATA
GGTTCGATTGTTGTTCAACTGGTTCGATTGTCGTTCAACTACATTCGATT
GTTTGAGTGAAACAAGGCATGTCCTAAATATATTTTGCGTGATGCGCACC
GCTTCCCGTTATTCCTCCTTAACTCTCATATATAGCTCAAAAGAATCGAA
TCAACAAGAGGATTTCGAAAAGGGTCAGCTTTTTAACAAAGATTAGTCTC
TCTAAGGGTCAGGTCCTAATCAAACGCAATCGAACATCAATCGAACGCAA
TCGAATATCAATTGAATCTGAAAATTGTGAGATTCAATCGCGTTCGACAA
TCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATC
GTCGATTCCATTTGATTGAGATCGTCTGGAGATGAAACCCTGCAAAAACC
ATGTTCAATCTTATCGTTTCGTTGGTATTGGAAACCAAGGAAATTCGCAA
AAAATTTATTTCTCCCTTTTTTAGCAAAATCTTTGTCGGAGGTGTTGGTA
AATTGACAAATGATGAATCTCTTAGAGCCTACTTTGGAAAATTCGGAGAA
ATTGCAGATAGTGTTATAATGAAAGATAAACATACAAATGAGCCAAGGTA
AGTGTCAGCATAAACATATAAACAACTGGACATCCATCTCCTTTCTTGTA
TTTTTGAAGATAACACTGCTAGCTTCGTTGCCGCCTCATTAAAATCATAA
AACCTAACAATAAATTTTGGTATACCTCTTGGGAATACCTTGGTAAAACC
TCAAAACTTCAACAAAAGTCTCTGTTGTTCTACTCTTCTCAAGTCTTATC
TATATCATAACCAAGATAACTGAGGCAAAATCATTGTCAGCTTGTCAAAA
TTCTGACTAATATTTTTAAATTTAGACTCAAAAGTATGGAATAATTTTAG
AGAGTATGGGATTCAAATTATGATAATCTCATGGTACAGGCTCTCAACTT
TGGCGTACTATTTTTTTCATGTCATAAAAAAATTATTAGAGTGACAAAAG
GGATGCAAAAGTATACACGCAGTTGATAAAATACTTATGCAATGTCAAGC
TCTATCAATCCTTTTACCTTAGTAATTCCAATAAAATGAAATTGTGACGG
AATATTGTAGAATTTTATATATCAATCAGGGCTGCAAATAAGCATCGGTC
ATCGGTCAATGTCCGACTGAAAAAGCCATTTGACCGACTGAAAATCATTT
GTGTCGGTCATGATGTCCGAATGAAAAAAAAACATTAATTTGAGTTGAAA
ACAAATCTTTCACACCCCTGTCTCTTTGTCTATTATTACTACTCTTTTAC
TTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTTTACTTTGATTTCATGCG
TTTTTATTTTTATCGACTTGCTTTCTTTGTAACTTTCATCAGTGTTTCTA
AGTTCACTTTTTATTGACTTGCTATCTTTGTAAACTTTCAAGAGTGTTTA
TAAGTTCACTTTTTATCAACTTGCTTTCTTCGTAACTTTCAAGAGTGTCT
CTAAGCTCACTTTTATCAACTCGTTATCGTTGTAACTTTCAAGGGTCTTT
CTAAGTTCACTTATATCGCATTGCTTTCTTCGTAACTTTAGAAGTTCCAA
GGTCACTTTTACCTACTCTCTTTCTCCATAACTTTCAAGACTGTATGATT
TCAGAAAACTTATAGACTGAATGACCGACAGGATTTAGAGCTTGACCGAC
AGAATTTCATCTCAGTCCCGACATGATGTCTGATTGACTAGAAATATTTA
TTTGCAGCCCCGATCAATTTTTTAATACAGTGGGTAACAAAGCTCGCTTC
AAAGACACAATGGAAGATAGTCGTCCAGTCGTTTATATGTTCAGACAAAA
AATTTGAGCCTTGCTAACAGTATCTTATGAAAAACTTTGTTTTAAAAAAC
GTTTTAAATTAAAAAAGCAATGGTGAAATGCTGAGTCAGCAGAAAAGTAA
ATTGCTGTTTTTGGAAGGAACTTATGCATTGAGCAATGATCATCTAAAAA
AATTACTTTCCAAAACTCCAAAAAAGAGCAATAATTGCTGTTTTTATCTC
ATATACCCCACTGTATATTTTCAGACTGAAGAGAAAAACCCTTTTCTTTT
GTTATTTCATGATATCTTTTACCTGTTCATTAATTTCACAGAGGGTTTGC
ATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGCTGTCATTGAACAAA
ATAATAAAGGTGGACATACTCTTGATGGAAAAATGGTAGGTTGTAATGTC
TGAAAGAAACTCTACATTATATAATGACAAGAAAAAAATGACGTTTCTAT
AAGAGAATCATTCTGTGTTTTTTATACATTTTGGCACACCTGCAATATTG
CCAATATATTGAAGTAGTTTTGGTTTCATTTTTAAAACTTAATTTGGTTG
CTTCATACAGAGAAGTAGGATGAAATAGAAAACCAGCTTCCTTGACTACC
CCATGCCTTTGTTTTAGCTTTATTAATAAGGTTAGTTTGATTAGGAAAAG
TTGAAGAAAAGATGGCTTGTCCTAAAAATGGCTGGCCATAAAAGTGGATT
TGCGTTTTACATTTGTGCACCTACCTGCTTTTCAATAAGATGTGCGCAAT
CCCGTGTGAAGTAGCAAATTTTACACCATTTTATTGCCTAAAAATTCTCG
TTGTAATGATATTGATTTGTTTCAATAATATTTGGTCCAGTTTCGGGGAA
AGCAATCATTAGAATTGTTAATGTTAGGATATTGTGAGCAAGAAAATAGG
TATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATATAAGCCCCTAAAGTTT
AAGCCTAATTAGACTCAAACAAAAGACTTCCACCACATCACCTCCCTTAA
GGGCAAAGGACCTGGTACATGACGAGCCGTGTCTTCAAGAAGCTGTTTTT
CTATCTCATTGCACTTCTCTGCTTCATATCTTTGATATCTGGGTTGAAAG
AAAAATTATAAAAAATTATATTTTGTTTGTATTGAGCCTTTCACTGACAC
TGCTGAGATGGATTGAAAATATGTTATTTTGAGTTTGGAACAGGTTGGAA
ACATTTGTTTGAGGCTAGGAAGGTCTGGAAGATAAAAGAGTTCTTTTTTC
TTTCCTTTACATAGTTTATTGAAGTACGAAAGTTCCAGAGAAAATCTGAG
GTGAGATCAAGTTTCTGACTTCATTATTGTTGTTATTCTTTGAAGGTTGA
TCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCAAAATAAACCCTTGG
TAAGTTTTTTAAGTCAGTCGATCTCTGGATCTTTGATATTAATGCCCTAT
CTACTTGATTTTTACTGAATGACACAAGATGAGTCTTAGACTTTTGTTTA
TTTATTTTTTGTCTCATTACAGTTTTTGAATATTTTTCATTTTCAGTATG
ACCCAGATAAGGCCAACACAACTCTTACTACTGCCAATGGTGCTGCACAA
CTTAACGTAAGAATTAAAAATCTTGGTATCAATATTGTTACATTTTGCAT
GCAAGTCAGTTTCAAATTATGTCTAAATCAGCAATGCCCTCAATTGAAGT
TGATAAATGCTTTGCTATGACCACTGGTGTTTGATCAATAATTTAAATCA
AAACTTTTCTTTCTTGAACAGTTTCAATACAAAGGTCCAATGAAGTGCTC
ACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTGGTACAACAGAGG
ATGATGTAAAGAAATATTTTGAACAATTTGGAAAGGTAATTTGAACTTTT
TTCTCTTCAAATACTCCTTCAAAATTAAAAAAACAAGGAATGTTTTGAAA
ATAAGACATTTAAAAATCTTAATTTCTTATCCTTCAGGTCCTTGCTGTCG
ATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGTATGTTTATTATT
CAGAATTTCGGACTTTATGCCCCTCAAATATCCAAGTTTACGAAAATCAC
CATATTTTTTGATCCACACAAAAACAATTAACAATGCAAAAAAGTTTAAC
CCACGCAAATAAATTTTTGAACTTCGCAAAAAAAAATTTGACCGTCCATA
AAAAAATTCTACCCACATGTCCATTCAACCCAAGCACCCACTCAACCCAC
ACCCGTCAAATCCATACCAGGGTAGAATAACTGATTTTAGAGAGGGCTAA
CTAACTGTGATTTAAAACTTAATCATTTTCCTTTCCAACAATTTGTTGAC
TAGGCTATAAAAAAAAAAAAATTCTATCAATTCATTTTCTGCTACATCTG
GTTGTAATCATACTTACAAATTCCTTAAAATTTTGTTTTGGTATATATGT
TTTTGATAAGGGATATGGTTATGAAGTATAAGCTTTTCTTGGACGGGTAA
CTGACCTCAACTTGTCCGTGCACAAGATTACTATCATCCCTATTACTATT
TTCAGCTTTCTATCTGCTTGAGCCAATTTTATTTTATATTGATTTATAAT
TAGTAGAAACCTAGTTGCACACCTTTGCATTTAACTCTAGACAAAATATA
TTGACAGAACTCATATATTTTAGATGTTTAAATATTTACAATTAATGAAA
AATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTAACCAAAATATTATA
TTTGAGATCAGAATATTAACATTTTGAATAACATTTGACATTACTAGAAT
TTTTGACCTTCAAAATCTAAAAATATATACATCATTTTATGATTTTATAC
TTAAAAGTATTTTAACTAAGAACTTAATAGTCCCATATGCCATTAATCAA
TGTTTTTGAATGTATGAATTTACTATGTCTTCTTTTTAGCAAAATATTTC
TAATTTATGATTACCTAATTAGGCTTTGCATTTGTTGGATTTGAGACATT
TGATGTAGTTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGAA
AAACGGTGTGATATAAAATATTTTAATGTTGTTTTACCAATTATTTTTTC
AATTCTTCGTAATTTATAATCAATATTTTTAAAAAGTTTCAGGTATTTTC
ACTATTTTGACTGACACTGTAACTAATTTTAGTTCAGCTCTTTTCAGAAA
TTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAGACTTTAATATTGTT
TGAATGTTATTTTGCAATCATTTGTTCAGTATTTTTGTTTTTCTGAAAAG
CTAATTTTTGCTTATTTTTTAGATTTTAAAATTTGCCTTTTTTCAGTCAG
TNTTATATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATT
TAACTCTAGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAA
ATATTTACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTT
AAGTAACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAA
CATTTGACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACA
TCATTTTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGT
CCCATATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTT
CTTTTTAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCAT
TTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGA
TATCATCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTG
TTTTACCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTA
AAAAGTTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTA
GTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGC
CTTAGACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTA
TTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTTCTAGATTTTAAAA
TTTGCCTTTTTTCAGTCAGTCATTATTCAGTATTACTGTTCTAAACTGAA
TTTTGAGATTGGTTTATTTTGTTGTAGGTCGAAGTAAAAGGCTCAGATGA
GCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGGTATGAGTGAGTACC
AGAACTTTCTTATTATTTTAATGATTACCTTTCGAATGCTCAAATACTGA
TTCTCGTCTACGGGAAGGGTTTTTTTCAAATGACCTTCTTGATTTATTTG
CGAATTAAATACCTTAAGGAAAGAAATTTTTGTGGAACAAGTTTTTGACA
AATCCGCGAAATAAGAATATTATCATGATTTAGACAGGTTTAGAAAATAA
CCTATAGTATTAGTGTTTTTGGGGCAGAATAAGCCATATTTAAACAAAAA
TTTGTCTCAACCGCAAAATTAAATTCTGTGAAACTTCTGAATTTTGAGCT
GTGAACTGCGAAATTAAATTCCACAAAAATTTTTTTCCGCAGAGATTTCT
TCCCTTAAGGTAACAACAAACAAGGAATTGAAATGAATTTATCTTAAATA
TTTTGCTTTTTTTTCAGCTATCCGGTATGCTTCTGCTGGAAGAGGTAGAG
GAATTGGATCAGGAAATATTGGAACAGTGACAGGATACGGTGCATATGCA
AACCTTGGTCAACCATTAATCGTAAACCCTGCTCAACATAGTGTACAATA
TACAGGTAAGAAGTTAGTTAGCAAAACATATTTGCTATAAGCCTTAAATA
TCAACACTGATCACACCTTGGTAAAAGGATTAATGAATTATAGACAAAAG
TATGTTAATTAGGGTTTAAACTGGTGTAAATAATGTTTTTTTTTTTTTTC
AACCTGATAAAAAAAGAAATAAAATAATTGATTCGACAAATCCTTTTGAA
CCTTCAGTTGCTTTTTCATTACTATTTTGTTTTTTTCTCAGTTCCTGCTG
CAGCAACTGGTGGATATGTGTATGATCCCGCATCTAATACGTATTATCAA
CTCCCTGGAACTGTCGTCGCTGGTAAGACTATCACTCAAATTTACCAGAT
GAATGCACGTCAAAATATTTCAAAACCTTATTTTATAAAAAATTACTCAA
TAGTAGGTTTTAAAATAGATCACTCTTTGGTATCTGGTCAAAAATATAAG
CTCGATAAAATCGCGAAATTTAATCCCCGTTAAAGTTTATCCCATTAAAG
TAGTAACAAAATATTTCTGTAATTAACAGGTGGTGCAGTTGCAGGTGCAG
TGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCCCATACGCTGGTGCA
ACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCACAAGTTGGTCAGCG
AACGTTACAAGCAACTGATATGATCCAAGGACTAGCAGCAGGCTCAACAG
TTGGTAAGTGAGTAATCTACGTAAGTCATCTCTTGAGAATAACTTTTAAA
AGTTTGAGTGTCCAAAAGTTCTAAGTAAACATCATAGATCAATAACAGTA
CTTTGTATGTATATGATATTATCAATCATATTATCATATTTTTAGCCTTG
GGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGGCCAACTCGACATAA
CGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGGAAACACAGTCGCCG
ATCCTCACGTCGTCTATTCTACAGCAACATCTATTTCTGCTGGCGATGCT
GCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGAAGATAAGATATTGA
ACTTCAAAACTGAAAAAAGAGACTTCAATCGTACTTTGATCTGTACGTAA
AGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATGGACAGCGATTTTGT
AAATAAAAACTTTTTTAATCTATTGATTGATTGATGCTTTGTCAGTTGGT
TCTTCGATACGTGATAATCATATTGCTCTTTGGTGACAATTCGGTTTTAT
AAATGAAAAGACATTTTATTGGATTTGTCTACGCCATGCACAATGGATGT
AGATATTTTACGCGATAATTTCATTTGAATGAACAATTTTTAACGTGAGA
ACTTTATGGACATGCGCGATATTTCTCTCTTTTTATTTGAAAGAAAATTT
ATTCAATGGAATTACAAAATATTTTGATTGTTTATCCATTTCTTATTTTT
TTATCGGAATTTTCTTTACTTACTATTGAGTCCACTTCCACATCAGCTTA
GTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056942-exon-scaffold_284-1575043694:888462..888711TCONS_00056942-exon-scaffold_284-1575043694:888462..888711Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:888383..888408TCONS_00056942-exon-scaffold_284-1575043694:888383..888408Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:887415..887537TCONS_00056942-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:885777..885870TCONS_00056942-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:884763..884816TCONS_00056942-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:884556..884615TCONS_00056942-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:884277..884390TCONS_00056942-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:884126..884174TCONS_00056942-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:883107..883189TCONS_00056942-exon-scaffold_284-1575043694:883107..883189Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:881921..881984TCONS_00056942-exon-scaffold_284-1575043694:881921..881984Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:881357..881494TCONS_00056942-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:881040..881120TCONS_00056942-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:880659..880832TCONS_00056942-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1575043694:879845..880516TCONS_00056942-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:888462..888711TCONS_00056942-exon-scaffold_284-1510915933:888462..888711Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:888383..888408TCONS_00056942-exon-scaffold_284-1510915933:888383..888408Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:887415..887537TCONS_00056942-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:885777..885870TCONS_00056942-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:884763..884816TCONS_00056942-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:884556..884615TCONS_00056942-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:884277..884390TCONS_00056942-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:884126..884174TCONS_00056942-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:883107..883189TCONS_00056942-exon-scaffold_284-1510915933:883107..883189Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:881921..881984TCONS_00056942-exon-scaffold_284-1510915933:881921..881984Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:881357..881494TCONS_00056942-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:881040..881120TCONS_00056942-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:880659..880832TCONS_00056942-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1510915933:879845..880516TCONS_00056942-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:888462..888711TCONS_00056942-exon-scaffold_284-1491911889:888462..888711Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:888383..888408TCONS_00056942-exon-scaffold_284-1491911889:888383..888408Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:887415..887537TCONS_00056942-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:885777..885870TCONS_00056942-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:884763..884816TCONS_00056942-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:884556..884615TCONS_00056942-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:884277..884390TCONS_00056942-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:884126..884174TCONS_00056942-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:883107..883189TCONS_00056942-exon-scaffold_284-1491911889:883107..883189Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:881921..881984TCONS_00056942-exon-scaffold_284-1491911889:881921..881984Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:881357..881494TCONS_00056942-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:881040..881120TCONS_00056942-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:880659..880832TCONS_00056942-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056942-exon-scaffold_284-1491911889:879845..880516TCONS_00056942-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888711 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.0856	32.7704	22.0619	15.94	572.661	426.209	152.23	167.296	130.147	159.693	95.5208	83.6471	58.6952	61.7813	55.3226	101.958	100.866	97.9045	13.8182	39.0551	98.072	99.4924	80.7204	94.4598	42.496	48.235	62.1471	44.3262	70.9284	78.6036
Blast
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BLAST of TCONS_00056942 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.055e-34
Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 2 
Query:  242 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQAHLNKKKAEGMT 919
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++       A G +
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00056942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H9.055e-3433.48RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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