TCONS_00056689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056689
Unique NameTCONS_00056689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056689 ID=TCONS_00056689|Name=TCONS_00056689|organism=Clytia hemisphaerica|type=transcript|length=566bp
CTAGAGCAAATAATGAAAGTCCTGGGAACGTAAAGCAAAAGACCACATTA
AAGactgaAGATGACAAAGAAGGCTCCACATCTTCACAATCACAAGCTTC
TCCAAAAAAGATTTTGACTCGTAACCAGATGAGGTTCCAAATAATGGACT
GTGGCGATACTATGGCTGCAGCAGTTCGACAATCAGAGCAAAATCTCACT
ACTTCGTTGGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGACAATGAA
AAGCTACTATCAAAGTCCCAAGAAACTCACAAAAACATGCAGTCATGTCA
ATTATCTGGTATCAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGAAT
GATGACCCTTTGGAACTGGTGGAAGAAAACAATGAAGATGTGTCAAATTC
CATCTCAGAACTATGTATTCCTATTGACATTGACACTGGCGTTGAAGTTG
ATGCTCTTTTTGAGGAGGATACATGCGATGAAGAACAAAAGGTTGAAAAG
TTTAGATTATTTTTATTCTCTTCATAGTATGTCGGCATAAaacttaaata
aattttttctattcAG
Run BLAST on NCBI

protein sequence of TCONS_00056689-protein

>TCONS_00056689-protein ID=TCONS_00056689-protein|Name=TCONS_00056689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
RANNESPGNVKQKTTLKTEDDKEGSTSSQSQASPKKILTRNQMRFQIMDC
GDTMAAAVRQSEQNLTTSLEEFFKNANPLLTMKSYYQSPKKLTKTCSHVN
YLVSNGLKLKGKSKKNDDPLELVEENNEDVSNSISELCIPIDIDTGVEVD
ALFEEDTCDEEQKVEKFRLFLFSS
Run BLAST on NCBI

transcript from alignment at scaffold_281:343167..345964-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056689 ID=TCONS_00056689|Name=TCONS_00056689|organism=Clytia hemisphaerica|type=transcript|length=2798bp|location=Sequence derived from alignment at scaffold_281:343167..345964- (Clytia hemisphaerica)
CTAGAGCAAATAATGAAAGTCCTGGGAACGTAAAGCAAAAGACCACATTA
AAGGTATCTTTTGAAATTATAAATTTAAATACTCAGCATTAAAATCATAA
ATCTTGAAAATCATTATTACAATTAGCCGATTGCTAAAGGCAGAGTGATG
TCAGAGTTAGGTTGACTGACTGGTTTTGGAGTTGCTTTCAAATATTATTT
CAGATTAAGAGTCCAGAAATTTGCTAAACTTAATTATTGCATTTTACTGA
GTTGATCTAGAATTCAAAGATTTGATTTTCAGACTGAAGATGACAAAGAA
GGCTCCACATCTTCACAATCACAAGCTTCTCCAAAAAAGTATATTTAAAG
TTATTTAAACTTGGGCGAGACTAGTTTGATTTTTCTTTAAGTCAAAGAGG
TAACGTGAAATTCTTTTGATGGTCAGCTTTTTTTGCTTTTGTTTTTCGTT
TACATCTTGGGGAATCTTTCTTGATGTCACAATAAATTAACATCACTAAA
AATTAATGGCAGATTGTTGAAATCTCCAAATTCTTTCTAGGCCTGGTGTT
TTCTTACTAATTTTGAGCAATGGTTTACAAATTTATGTTTATTTTATTTA
TGTTTATTTTACAGAAAATCACGGTAAACAATTGGTTTAAGTGATTTCAA
TTGTCTTAATTTTATTTTTATTTTTTGGTTGTGTGTACTAAGTTTCGGAC
TTTCATTTTATTTTTAGGATTTTGACTCGTAACCAGATGAGGTTCCAAAT
AATGGACTGTGGCGATACTATGGCTGCAGCAGTTCGACAATCAGAGCAAA
AGTAAGTACTTTAAAGGAAGGAATTTCTTTTATTTTAATGTCTTTATATT
TTTGAAAGAAAGATCAATAATCAAGTAGACTTGTTGTAAACAAAGAATAC
CTGAAAAACAATAATAATCTTCCATTATATCCGTAATTCCCCTTTATATG
ATTATAAAATGAAATGTCTGCTCGTTTTATCTTGATCAAATTTTAAAGTC
ACACATGCCTGATGAAAGGAGGATGAAATTATGATTGTCTTTATCCTTAG
TCTCACTACTTCGTTGGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGA
CAATGAAAAGCTACTATCAAAGTCCCAAGAAACTCACAAAAACATGCAGG
TAATTTTTTTGTGAATTGTGTGTTTTGATTTTGTATCCATCAATATAAAA
CAAAAAATAAGTTAAAAAATTGGATAGTTCCGACAACGTTTTTTTTAATG
TATTCACGCACAAGCAGTCGGCTTTGCTGAATCAAATATGAAAACGAAAC
GAAAAGCACCAGCTAGGCAGGAAGTTTGTTATTGTTCTAAATACATTGGC
AGGAAACCCTAGATATCAGGAGACATCATTCCCTTAAGCTGATAAAAAAC
ACGTGTATTGTCAGCAGTATAGGGGTCTTGAACTTTTGACAAGGAACCTG
TACTTTCCACATATATCAATAATTTCTCTCTTACAGTCATGTCAATTATC
TGGTATCAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGGTACTTCAA
TACATCTTTTATTTTTTAAAGAACCGAAGAGCCAAAATAGTTAACAGTTT
TAAACAAAACTTCCAAAAAGGAGACGAACTTCAACGAGATGATTACAAAA
TTATCAAAGGTCTAAACGTGATTTTGATTTAGCAAACATTCGTCTGATAT
GCGTTATTTGGGCCAGGTATTTCTGCAACTGTTTAGTTTTTTTACGTAAT
AGAATGATGACCCTTTGGAACTGGTGGAAGAAAACAATGAAGATGTGTCA
AATTCCATCTCAGTAAGGACAATATATATATTTAATTTCCTAGGCTTCTG
GCATCTCCCAATTAATTTTGATATAAGTGGATAGTTCAATCTCAAATCTA
GTTTTGGTTATGCTTAAGCAAANTTAATTTCCTAGGCTTCTGGCATCTCC
CAATTAATTTTGATATAAGTGGATAGTTCAATCTCAAATCTAGTTTTGGT
TATGCTTAAGCAAAATTTGAATTCAGACTTAATAAGCTCATGATAATATG
CTTTTAACAAGAGAAATTTGAATAGATGACGAAGTAGTCCAAGTAAGATG
TTATTCTATCTCATTGATAATAATTCACTAATCTAATACNGTTATGCTTA
AGCAAAGTTTGAATTCAGACTTAATAAGCTCATGATAATATGCTTTTAAC
AAGAGAAATTTGAATAGATGACGAAGTAGTCCAAGTAAGATGTTATTCTA
TCTCCTTGATAATAATTCACTAATCTAATATGATATTTCCTGAAAAATTC
CTGTAAGGATTTATGTTTAACATTTGAAACAAAAAAAACTTAACCGTAAG
TTCTAGCCAAATTAAGGGTTCATCAAGTGTATTCGAAATGTTCCAAAAAA
TATCTATTTTTTGTTCTAGACACTGTTTTATTCACTCGACTTTTTTAAAA
TATTTTGGCTCTTGTTCTGTTCTTCTTAAGTTCTTGGAAGTGATATCTTA
CCACAATTTGCATCCCCTATTTAAAAAAAGAACCTGTCTATTCTTTTTTA
AGGATATCTGTTGAACTTGATTTCAAGTTTTCTCAAACAATGGTTTTTCT
TCATTTATTTTTCATTTATCTTGTCGTTCTAAATTCCAGGAACTATGTAT
TCCTATTGACATTGACACTGGCGTTGAAGTTGATGCTCTTTTTGAGGAGG
ATACATGCGATGAAGAACAAAAGGTTGAAAAGTTTAGATTATTTTTATTC
TCTTCATAGTATGTCGGCATAAAACTTAAATAAATTTTTTCTATTCAG

Coding sequence (CDS) from alignment at scaffold_281:343167..345964-

>TCONS_00056689 ID=TCONS_00056689|Name=TCONS_00056689|organism=Clytia hemisphaerica|type=CDS|length=3675bp|location=Sequence derived from alignment at scaffold_281:343167..345964- (Clytia hemisphaerica)
GAACTATGTATTCCTATTGACATTGACACTGGCGTTGAAGTTGATGCTCT
TTTTGAGGAGGATACATGCGATGAAGAACAAAAGGTTGAAAAGTTTAGAT
TATTTTTATTCTCTTCATAGAATGATGACCCTTTGGAACTGGTGGAAGAA
AACAATGAAGATGTGTCAAATTCCATCTCATCATGTCAATTATCTGGTAT
CAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGTCTCACTACTTCGTT
GGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGACAATGAAAAGCTACT
ATCAAAGTCCCAAGAAACTCACAAAAACATGCAGGATTTTGACTCGTAAC
CAGATGAGGTTCCAAATAATGGACTGTGGCGATACTATGGCTGCAGCAGT
TCGACAATCAGAGCAAAAACTGAAGATGACAAAGAAGGCTCCACATCTTC
ACAATCACAAGCTTCTCCAAAAAAAGAGCAAATAATGAAAGTCCTGGGAA
CGTAAAGCAAAAGACCACATTAAAGGAACTATGTATTCCTATTGACATTG
ACACTGGCGTTGAAGTTGATGCTCTTTTTGAGGAGGATACATGCGATGAA
GAACAAAAGGTTGAAAAGTTTAGATTATTTTTATTCTCTTCATAGAATGA
TGACCCTTTGGAACTGGTGGAAGAAAACAATGAAGATGTGTCAAATTCCA
TCTCATCATGTCAATTATCTGGTATCAAACGGACTTAAACTCAAAGGCAA
ATCTAAAAAGTCTCACTACTTCGTTGGAAGAATTTTTCAAAAATGCAAAC
CCTTTGTTGACAATGAAAAGCTACTATCAAAGTCCCAAGAAACTCACAAA
AACATGCAGGATTTTGACTCGTAACCAGATGAGGTTCCAAATAATGGACT
GTGGCGATACTATGGCTGCAGCAGTTCGACAATCAGAGCAAAAACTGAAG
ATGACAAAGAAGGCTCCACATCTTCACAATCACAAGCTTCTCCAAAAAAA
GAGCAAATAATGAAAGTCCTGGGAACGTAAAGCAAAAGACCACATTAAAG
GAACTATGTATTCCTATTGACATTGACACTGGCGTTGAAGTTGATGCTCT
TTTTGAGGAGGATACATGCGATGAAGAACAAAAGGTTGAAAAGTTTAGAT
TATTTTTATTCTCTTCATAGAATGATGACCCTTTGGAACTGGTGGAAGAA
AACAATGAAGATGTGTCAAATTCCATCTCATCATGTCAATTATCTGGTAT
CAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGTCTCACTACTTCGTT
GGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGACAATGAAAAGCTACT
ATCAAAGTCCCAAGAAACTCACAAAAACATGCAGGATTTTGACTCGTAAC
CAGATGAGGTTCCAAATAATGGACTGTGGCGATACTATGGCTGCAGCAGT
TCGACAATCAGAGCAAAAACTGAAGATGACAAAGAAGGCTCCACATCTTC
ACAATCACAAGCTTCTCCAAAAAAAGAGCAAATAATGAAAGTCCTGGGAA
CGTAAAGCAAAAGACCACATTAAAGGAACTATGTATTCCTATTGACATTG
ACACTGGCGTTGAAGTTGATGCTCTTTTTGAGGAGGATACATGCGATGAA
GAACAAAAGGTTGAAAAGTTTAGATTATTTTTATTCTCTTCATAGAATGA
TGACCCTTTGGAACTGGTGGAAGAAAACAATGAAGATGTGTCAAATTCCA
TCTCATCATGTCAATTATCTGGTATCAAACGGACTTAAACTCAAAGGCAA
ATCTAAAAAGTCTCACTACTTCGTTGGAAGAATTTTTCAAAAATGCAAAC
CCTTTGTTGACAATGAAAAGCTACTATCAAAGTCCCAAGAAACTCACAAA
AACATGCAGGATTTTGACTCGTAACCAGATGAGGTTCCAAATAATGGACT
GTGGCGATACTATGGCTGCAGCAGTTCGACAATCAGAGCAAAAACTGAAG
ATGACAAAGAAGGCTCCACATCTTCACAATCACAAGCTTCTCCAAAAAAA
GAGCAAATAATGAAAGTCCTGGGAACGTAAAGCAAAAGACCACATTAAAG
GAACTATGTATTCCTATTGACATTGACACTGGCGTTGAAGTTGATGCTCT
TTTTGAGGAGGATACATGCGATGAAGAACAAAAGGTTGAAAAGTTTAGAT
TATTTTTATTCTCTTCATAGAATGATGACCCTTTGGAACTGGTGGAAGAA
AACAATGAAGATGTGTCAAATTCCATCTCATCATGTCAATTATCTGGTAT
CAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGTCTCACTACTTCGTT
GGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGACAATGAAAAGCTACT
ATCAAAGTCCCAAGAAACTCACAAAAACATGCAGGATTTTGACTCGTAAC
CAGATGAGGTTCCAAATAATGGACTGTGGCGATACTATGGCTGCAGCAGT
TCGACAATCAGAGCAAAAACTGAAGATGACAAAGAAGGCTCCACATCTTC
ACAATCACAAGCTTCTCCAAAAAAAGAGCAAATAATGAAAGTCCTGGGAA
CGTAAAGCAAAAGACCACATTAAAGGAACTATGTATTCCTATTGACATTG
ACACTGGCGTTGAAGTTGATGCTCTTTTTGAGGAGGATACATGCGATGAA
GAACAAAAGGTTGAAAAGTTTAGATTATTTTTATTCTCTTCATAGAATGA
TGACCCTTTGGAACTGGTGGAAGAAAACAATGAAGATGTGTCAAATTCCA
TCTCATCATGTCAATTATCTGGTATCAAACGGACTTAAACTCAAAGGCAA
ATCTAAAAAGTCTCACTACTTCGTTGGAAGAATTTTTCAAAAATGCAAAC
CCTTTGTTGACAATGAAAAGCTACTATCAAAGTCCCAAGAAACTCACAAA
AACATGCAGGATTTTGACTCGTAACCAGATGAGGTTCCAAATAATGGACT
GTGGCGATACTATGGCTGCAGCAGTTCGACAATCAGAGCAAAAACTGAAG
ATGACAAAGAAGGCTCCACATCTTCACAATCACAAGCTTCTCCAAAAAAA
GAGCAAATAATGAAAGTCCTGGGAACGTAAAGCAAAAGACCACATTAAAG
GAACTATGTATTCCTATTGACATTGACACTGGCGTTGAAGTTGATGCTCT
TTTTGAGGAGGATACATGCGATGAAGAACAAAAGGTTGAAAAGTTTAGAT
TATTTTTATTCTCTTCATAGAATGATGACCCTTTGGAACTGGTGGAAGAA
AACAATGAAGATGTGTCAAATTCCATCTCATCATGTCAATTATCTGGTAT
CAAACGGACTTAAACTCAAAGGCAAATCTAAAAAGTCTCACTACTTCGTT
GGAAGAATTTTTCAAAAATGCAAACCCTTTGTTGACAATGAAAAGCTACT
ATCAAAGTCCCAAGAAACTCACAAAAACATGCAGGATTTTGACTCGTAAC
CAGATGAGGTTCCAAATAATGGACTGTGGCGATACTATGGCTGCAGCAGT
TCGACAATCAGAGCAAAAACTGAAGATGACAAAGAAGGCTCCACATCTTC
ACAATCACAAGCTTCTCCAAAAAAAGAGCAAATAATGAAAGTCCTGGGAA
CGTAAAGCAAAAGACCACATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035708XLOC_035708Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056689-proteinTCONS_00056689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056689-exon-scaffold_281-1575043694:345912..345964TCONS_00056689-exon-scaffold_281-1575043694:345912..345964Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:345627..345682TCONS_00056689-exon-scaffold_281-1575043694:345627..345682Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:345164..345247TCONS_00056689-exon-scaffold_281-1575043694:345164..345247Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:344816..344914TCONS_00056689-exon-scaffold_281-1575043694:344816..344914Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:344424..344478TCONS_00056689-exon-scaffold_281-1575043694:344424..344478Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:344153..344212TCONS_00056689-exon-scaffold_281-1575043694:344153..344212Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1575043694:343167..343325TCONS_00056689-exon-scaffold_281-1575043694:343167..343325Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:345912..345964TCONS_00056689-exon-scaffold_281-1510915933:345912..345964Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:345627..345682TCONS_00056689-exon-scaffold_281-1510915933:345627..345682Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:345164..345247TCONS_00056689-exon-scaffold_281-1510915933:345164..345247Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:344816..344914TCONS_00056689-exon-scaffold_281-1510915933:344816..344914Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:344424..344478TCONS_00056689-exon-scaffold_281-1510915933:344424..344478Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:344153..344212TCONS_00056689-exon-scaffold_281-1510915933:344153..344212Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1510915933:343167..343325TCONS_00056689-exon-scaffold_281-1510915933:343167..343325Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:345912..345964TCONS_00056689-exon-scaffold_281-1491911889:345912..345964Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:345627..345682TCONS_00056689-exon-scaffold_281-1491911889:345627..345682Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:345164..345247TCONS_00056689-exon-scaffold_281-1491911889:345164..345247Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:344816..344914TCONS_00056689-exon-scaffold_281-1491911889:344816..344914Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:344424..344478TCONS_00056689-exon-scaffold_281-1491911889:344424..344478Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:344153..344212TCONS_00056689-exon-scaffold_281-1491911889:344153..344212Clytia hemisphaericaexon
TCONS_00056689-exon-scaffold_281-1491911889:343167..343325TCONS_00056689-exon-scaffold_281-1491911889:343167..343325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:343167..345964 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.193817	0	0	4.82458	3.17704	5.11061	8.01403	3.43348	3.52681	3.52389	4.83149	3.89948	3.4319	0	0.242231	0	0.229395	0.10564	0	0	0	0	0	3.52101	6.1896	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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